Gene detail

Detailed information of HS19645 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19645	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	chr22	18393599	18397209	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19645

ATGAAAGGAATCACTGATGAACCAAAGTATTCTGTTAGTCTCCTGGAGGGAGGCACAGCCCTTTGTGACGTGATTGACAATCACATTTATGAACAAACTCTGGTAAGGGCTCACACCACAACGACATGCACATTTAGCATAAAGATCTGAATGTCTTACTGTATTAGATGTGTCTCGACTCTCAAACACCTATTATTGTATTCTTTTGCCTAGTTTATTACAGGTGGTGTGTATTTTATCTTATTCATCCACATGTTTGTTTCCTTTTTCCTCAGTCTGAGAAGAATGCATTCTTTGTAGCAGACCTGGGAGTTTTAATGAGGCAGCATGTTCGCTGGCAAACTCACATGGTCCAAATTCGACCCTACTATGCTGTCAGATGCAACAGCAGTCCAGCTGTTATTGAAGTTCTTGCTGCCCTCGGAACTGGATTCATTTGTACCAACAAGGTACTCTCTCATACTTGCATGTGGAGCAGAAAGTTGCGTAATTTACATCTATTTTTTTTCCATTTAGGGGTTTACTACTCTTATTTTACAGGGTAACAGATACAGTCCAGTAATGTACCACTCCTTTGGCTCTTCTCGAGCAAGTAATAGTCCATTTATGTGCAGTTTATATTGCACAGCTCTTGCTCCACAGTCTGTTGAATAGATAATATAGGCACCACCAAGGGGTCAATGTACCTCGGTGTCTACCTTTTTAATATTGTTTTGTGTATCTGTCATATGTATATGTAGTATGATAAAATGTCCACCTGCAATATATTAAGGAAATACTGTTCTAACTTTGTCTTGTTTGTATTTCAGTCTGAGCTTGAGCTGGTCCAGAGCCATGGTATTGCCTCTGAAGACATCATCTACAGCGGTTTTTGCAAGCAAGTCTCCCAGATAAAATACGCTGCTAAGAATGGCATTGACCTCCTGGTGTGTGACAATGAAGCAGAGCTGCGCAAGATTTCTCGCTGCCATCCCAATGCCAAGTAAGTGCTAGTGCTAATGAGCGACTTGAGAGCTGCTGCTCTTTCAACTTGAAGTAATTGGCTTTGTGTGAGTATGTCCACTTTTGTAGTAGTCATGAGTTACTTTTCATCAGGATTTGGTTTGAAAAACTGAATGTTGTTTCCTATTTTTTGGCATATTGGGATTGACAATAACCAAATAAGTTGGTCTCAGCTGAAGGGTTTTTGTGATTTAATGTGCTCGCTTCTCAACTCATTTTAGCTGTGTACCACTtttattttattgatctaatttatttatttTTCTTCTAAGCAAACCCGTAACAGTATTCCTTTTATTTAAATCAGGCTGCTGCTACAGGTTTCAACAGAAGCATCTGGCCAGGACAATGAAATGAGCATGACCTTCGGCTGTTCCCTCAAGGACTGCAGGCATCTGCTTGAGAAGGCCAAGGAGTTCGGTGTGCAGGTAGTTGGAGTCAGGTGAGGCCTACAAAGATGCACTGTGTGTGGTTATAAAACACTTTAAAGAAGCCTTCAGAGGTCTAGGAGGACCACAACAGATCTTTACCTCAGATCTGCTTTAGTTCAACCTGCCACGGAATAGTCTTAACACCTGTGAAAGTGTCTATATTTGACCATTAACTTCCCCTTTTCAATATTTCCCCCCCACAGGTCTCACATTTCCAGCGCGTGTGAGGATGACCAGATGTACGTTCATGCCATATCTGATGCCCGTTGTGTCTTTGATATGGGAGTACGTCATGTTAAATATTTCAACAACAACAAAAAACTAATATGCACTGCGGTCAAAAATCTGTTTACTGTCATACAGAGTTTAATTCATTTACATTTTTATTGTTGAGATTTTAAATGAATTAAAAACGTATTGAAGGAAAAAAAGACATTTAATCTAATAAATTATTACAATTTCGAATTTGTATATCCTTTTTTACAGGAATAGTTCTGTGACTAGCATTTATGTTTCTTATTTTTTACACACTGTCATGTTTTAGACACTTGTGACAGCTGCTTTGGTACTCACTTGTTTTGGTGACACGTTTTCAAGCCTTTATTCTGCCTCAGGAGGAAATAGGCTTCGACATGAACATACTGGACATTGGAGGTGGCTTCAGTGGATCTAAAACTCAGCTGGAACTGGTCAGTATCTTATATGCTTTTTACATGATATTAACGAAGGGACCATGGTGCAGTGTAATCTGTAGAACACAGGTTGAGAAATGTCTCATGATATTAGGTGGGCTTTACCTTTTGTCCCCATTTTAGAATGGATATTATCTGACACAATACATATCACCACAATGTCCCTTGTATATATATTTAAAAAATGACAATGAGGTAAAAATTGTATGGTTGTATAAATGTTACATCATACAGCGATAATGTGATTAGAGTAAGTAACATTTTAAATCTGACTTTTTTAAAAGGTCTACCCATTTTGGTTCCTAATTTTTACCGCTGTCGTCTCTTTTTGCAGATCAATAAAGCCGTTATGTCTCTTGTGGACCTATACTTCCCTCCTTCTACTGGAGTTTCCATCATTGCAGAGCACGGCAGTTTCTTTGTGTCCTCTGCTTTCACTCTGGCTGTGAACGTCATCTCCAAGGAGGCGGTGGCACGGGCACATGGTCAGTTGCATATGTTCCGGTTATGCAGTGTATTAATCAATATTAAACCCTATGTTTTTATGACTGTCTGAAAATGTAAACAAACTCTAAGGCTGACTCTTCATGCTGCATTTTGTTCGCCTGAACAGTTGTATACATCAGACTGTAGGACTATGAGGGGGGCTGACATTTGTACTATCCAGGAATTGGCAACATTACAACTGTAAAAATTACAATGAAAGATGCAGCATGTAAAGTCAACCAAAGAGAAATATGCAAACGTGCAATTTACAAATCGTGATATGTAACAAAATCTAAGCAGCACATTTAAAAATTAATTAATTGCACTGCAACATTAGTTTTGGCTGCCATCTCTCCAAACAGACGATCCGTCTCCCAACGACGAGCCAGAGTTCCAGTACCACATGAATGAGGGGGTGTACGGATCATTTGCTAGCAAACTCTCTGAAACAATGATTACGGCTCCCTCCGTTTATAGGGTGAGTCTCAAACACGTAATAAATCGATTTGTGTGATTTGTTGGATTACTTAAATAAATGAGCCATAAATCCCTGCTGTGTGTTAGCAGAACCCATCCCTGGACGCTCCAGTGTTCAGCAGCAGCCTCTGGGGTCCTTCTGGGGACGACCTCGACCAGGTGGTGGAGCACTGCCTGTTGCCTGAGCTCAACATCGGAGACTGGCTCACATTCACCCAAGCAGGGGCCTACAGTATGGGTCATCCACTGTGTGCCGCTACTGACTCACCACCACCGCCCGTATACTATGTCATCTCTACAAGAGACTGGTAAAGAACTCAGTGCTGGAGTTTTTTTGCAAAATCGTTTTTAGTTTTTTTCAACAAACAGAAACAAATTTGTCCTGGAATTATGTTCATTTTCCTCCTCCAGGTTTGAGATGCAGGACATCGGTGTGAACCACGAGGCTACGCTGAAAAACTTCTCTTTGGTCCCTTATTTCCTCAATTCCTGCCATACAGTGGCTGGTCTGTCAGTCCCAGCTATGAAAGGAATCACTGATGAACCAAAGTATTCTGTTAGTCTCCTGGAGGGAGGCACAGCCCTTTGTGACGTGATTGACAATCACATTTATGAACAAACTCTGTCTGAGAAGAATGCATTCTTTGTAGCAGACCTGGGAGTTTTAATGAGGCAGCATGTTCGCTGGCAAACTCACATGGTCCAAATTCGACCCTACTATGCTGTCAGATGCAACAGCAGTCCAGCTGTTATTGAAGTTCTTGCTGCCCTCGGAACTGGATTCATTTGTACCAACAAGTCTGAGCTTGAGCTGGTCCAGAGCCATGGTATTGCCTCTGAAGACATCATCTACAGCGGTTTTTGCAAGCAAGTCTCCCAGATAAAATACGCTGCTAAGAATGGCATTGACCTCCTGGTGTGTGACAATGAAGCAGAGCTGCGCAAGATTTCTCGCTGCCATCCCAATGCCAAGCTGCTGCTACAGGTTTCAACAGAAGCATCTGGCCAGGACAATGAAATGAGCATGACCTTCGGCTGTTCCCTCAAGGACTGCAGGCATCTGCTTGAGAAGGCCAAGGAGTTCGGTGTGCAGGTAGTTGGAGTCAGGTCTCACATTTCCAGCGCGTGTGAGGATGACCAGATGTACGTTCATGCCATATCTGATGCCCGTTGTGTCTTTGATATGGGAGAGGAAATAGGCTTCGACATGAACATACTGGACATTGGAGGTGGCTTCAGTGGATCTAAAACTCAGCTGGAACTGATCAATAAAGCCGTTATGTCTCTTGTGGACCTATACTTCCCTCCTTCTACTGGAGTTTCCATCATTGCAGAGCACGGCAGTTTCTTTGTGTCCTCTGCTTTCACTCTGGCTGTGAACGTCATCTCCAAGGAGGCGGTGGCACGGGCACATGACGATCCGTCTCCCAACGACGAGCCAGAGTTCCAGTACCACATGAATGAGGGGGTGTACGGATCATTTGCTAGCAAACTCTCTGAAACAATGATTACGGCTCCCTCCGTTTATAGGCAGAACCCATCCCTGGACGCTCCAGTGTTCAGCAGCAGCCTCTGGGGTCCTTCTGGGGACGACCTCGACCAGGTGGTGGAGCACTGCCTGTTGCCTGAGCTCAACATCGGAGACTGGCTCACATTCACCCAAGCAGGGGCCTACAGTATGGGTCATCCACTGTGTGCCGCTACTGACTCACCACCACCGCCCGTATACTATGTCATCTCTACAAGAGACTGGTTTGAGATGCAGGACATCGGTGTGAACCACGAGGCTACGCTGAAAAACTTCTCTTTGGTCCCTTATTTCCTCAATTCCTGCCATACAGTGGCTGGTCTGTCAGTCCCAGCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00278	Orn_DAP_Arg_deC	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	Domain	Interproscan
PF02784	Orn_Arg_deC_N	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000183	Family	Ornithine/DAP/Arg decarboxylase	Interproscan
IPR002433	Family	Ornithine decarboxylase	Interproscan
IPR009006	Homologous_superfamily	Alanine racemase/group IV decarboxylase, C-terminal	Interproscan
IPR022643	Domain	Orn/DAP/Arg decarboxylase 2, C-terminal	Interproscan
IPR022644	Domain	Orn/DAP/Arg decarboxylase 2, N-terminal	Interproscan
IPR029066	Homologous_superfamily	PLP-binding barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004586	Molecular Function	ornithine decarboxylase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006596	Biological Process	polyamine biosynthetic process	Interproscan
GO:0033387	Biological Process	putrescine biosynthetic process from ornithine	Interproscan
GO:0042177	Biological Process	negative regulation of protein catabolic process	Interproscan
GO:0042978	Molecular Function	ornithine decarboxylase activator activity	Interproscan
GO:1902269	Biological Process	positive regulation of polyamine transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-