Gene detail

Detailed information of HS19574 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19574	T-CELL SURFACE GLYCOPROTEIN CD4	chr22	15278981	15286984	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19574

ATGGTGGCTAGGGAGGGCATGCCTACCACTTTGGTCTGCACCGATACAAtAGTGAGGGGTGCCGTTGCCATCAACTGGATGGTGAAGTCACTGGATGAATGGAAACTGGTTCTCTCGGCCAGCGAAAGCAAAAAGTTCTCCGGTGGTGCCTCAAAGGCCTCCAcGCGATTGACTGACCCGAACTTCCAAGATACCGGGGTTTTCTCCTTGTTCCTTGTTCCCAGAATGGAGGACAGCGGTCTCTACTCGTGCTTGATAAAGCAACAAGAGAGGAAGTTGAAGGAGAAGATTATCCTCTTAGCCATTCTTACAGGTAGGAAAATCACCAGCTTACACGTGAGATGTTCAACAGCTGtTGGGAATGTATGTTaTTTTTGGTTAGAACAGCAAACAACATGTTTTGTATTTTTTTTcTGATGTAAATTTACTGATATTtATTaATTTACTTTTTCTGCTTTTACAGTCTAGTTTAAATCCtAATGAGGCCTCTTGATGCATATGCTTTTATGAAATGTTATACAACTCATTATTTACTTAATTGGCAAGTTAATAAGAACCTCTAAAATACAttacaatttacattttgaggttactataatttaagtatttttattttacttttcattAGGCCTTAGTGATCAATTACACATATTGATACTTTCCAACCAAATTTCATGAACAGACGCAATAATAAAATGCTGTGTGTGTGTTTTTTCATTCCTGATAACACTCCACTAATAGTTTCCCTCCTGATTGTGTCCTCCCTGATCTTCAGTCACCGTTCTCCCCGCTGCACCCATCCCTCAGCTGAGCACCGTGCGGCTGGCTGCCAGAGTTAATCCTGGCTATGCCGTCAAGATAACCTGGGCAGCACCTGGCGGCATTTACATGAAGAGCAAGAAAACAAACACAGACACAGTGACCAAACTGCCACTGGTCCAGAAcAAGGACGGAGGGACCTATGTGTGCATGGTGCACCCGTGGGGTAACAGCAGCAACACTGTGTTCGCCTTCGATGTGGACGTGACGGTTGATGGTGAGACGGACTTGAGAGCGAGAAGAGGAAAAGCATTGAGGAATTgAATACATGTATTCCTCAATGCTCCAGCAGCAGCATTATTTATTTAAGCATCTGTAGCTAGAGTTCTTCAAAGTATTTACTTGAGACCAGTTTCAAGATTCCAAAGTCTACTGGAaAACTTGCCTGAAATCCAGCCAGTCCTCCTGTGAATAATATAGTAGCTACATTTATGTATTATTCATTATATGCCTTTTGCCCATACCTTCTTGCTTCTCTTCTCTCCACAGCTTACAGTGTGGCCTCATTCACCAATATAACATATGGTGAGTGACTTTgTAACACAAGCAGTCTGAAAGTCCTGTGTCAGCAGCTTGATAAGCAGGCAGAGCAGAATGCAAAACCAACTGAAGAAGTAACTCTCAGCATTGTTGTAGGATATCATCTCTTCTCTCCATTTCCCGACTCTCTTACTATTCTGTTTAGTCTCTCTGTCTTTATCCATCCTCTTTTTATCCCCAATTCCCTTTCTGTATATTTTCATGCGGTCTTTTGTCTTCATGTCTATCTCCACTCTTCGCCGTCTCATCTATTTCATCACTATGGTTTCTCTTGTGTTTCCACTTACTTGCTGCAGAGACGGAGATCTCCACCGCCACTCGGGCTCAGACATTGTTTCCATTGACCTGCCCTGGTGTCCAAGGGGACTACGTCCGGCTTCACTGGCTACCTCCAGACAGCAAGAaGCACAGTGAGGTAgAACTGGTGTACCAAAATGACAGCTGGGGGGGTTTAACCTTTGTCACCAAaCACAACAAGAGACTCCAGCTCGCTGGCCCCCCCTACAACGCGGAGGCCGGGAGCTTCTCCTTTCTGCTCACCCCTGAGTTAAAAGATGGCGGCCTCTACATCTGCGAAGTGTTCCTCAATGACATCGCCGTCAGCCGCAGGACCACGCTCAGCGTGCTGACAGGTACGGATCGGGGTCAGGAGGGGGAGAAAGACATGCAGGAGGTGGATTAGGAGGAATAAAACAAGGGGCGGGGATGGATTTGTGGTGTATTTCTCCTGGTTAATATTCCATTTACGGTGGCAGTTGTGCAAAGTAGCTGTCACAAAAGAGACAATTAAACTGATGGATGAAAAATTACCATCAGGAGAGCCCAAGTTTGTTTTTATTCTGCTTGGGTGTTGAATATTATTCTTACAAAAGATATTACTTCATTTGTTGCTTTTATGATGAAATATTTCATAGGTGTCTAGAGACTAATGGGGGAGTAGGAACAGGTGAGCAGAGATCTAGTGAGTGCAGGACTAACAGGTGAAACTAAGTAGGCCAGAAGGGAtCCAACACCAGAGCAGGAAGCACTAAACATGAATCTATTGAACCTAAACTGAACAGCCATAAACATACATgagattgaaccttggcatttagcccatccaaagcattaggggcagtgttgtgaagcgcccggggagcaacttggggttcagtgacttgctcaagggcacagagaaggggagcagggcatcaaaccgctaatgaataaaacactattaccccttagccacagccaccAACATGAAACCAACCAAACATAACCTGTGAGCGGAGCAGACTGACGTGGTGGAGCTGGAGCCCGGGGGCCATTAGCTTAGCGCGTCGGGTTAATGCTCGAATGGGATTTGTTCGTACGACATGTTGGAAATCCAAAATGTTTCCAGTTGTTTAAAATGGCCAGTTGTCAGAGGAGGGGTGAACCTACAtctccgctggttgcctggcaacctcactgtgacaacaagactctgtacgtcactgtatcccgctatcacatatgactccacttaaccacaacttgtcttttcacattgttgtttgtgcatggattaaacaaataacacatatttgataagtgagttttagacaatggccgtgccaggggagctgtttccccttccagtcgttatgcaacgccaacacaatcgccttctggttccagctccatacttaatgaatatgtagacaagtgaggtaatgtcaaATAACCCTTTACATCTGAAAGGCTTACACATAaATGGTAaAGGATTATAGAGATAGTCAAAGGACCCATGTTTCGAGAAGACAAAGACAAAACCCTGCTGTCCTTAAGAAAGATACTAGTTCTCACCAGCTCCCCGTGTATTGTGCAGAAGTCATATAGTCCTATAGTCATAGAGATGgTGTCACATCACTAAATGAACACATTTACAATACTGCTCATGGAAAGTTATATTTGCCCGATTCATTCATTTAAAAATAAAAAAATTCAGCAGAACACCATAGGGAGGTTTCACCCTTTTCAAACGCACGCGGGACGCATGTGCAACCACACGGGCAGAACCAAACACGCACACACATACACATCCAAAGCCCTGTCACGGCGGCCTTGGAAGACTTTACTAATCACGGTCTCACTGGCATCCATCACAGCCGCCCTAACGTGACCAGCCGATCCGTCACTGTCATTGTCAGACTGCATCCCTCATACACACACACATACACCCACGCACCAATCATGTGACGCATATATTTTTACCCCACCTCATTATAAGTATCATTATGTATGATTATACCTGCAGCCCTCCCACCAAGGCTGGATGTGGCCCACACTGATCACACTAATCAAGGCTGAAAtgtgtgtgtttttatgtgtctgtgtgtgtgtgtgtgggggttctgtgAAGCTTGATTACACCCAGATGGATCCTCATTTCAGTTTGACGAGACACTAAGCATCAGTCACAGTCAACAATGCATTAGCAGCAAATCACTTTAATGAATATATATTATTTTGACCCCTCTCTGAATTGTTCTTTGTTTTTCATATCACTTTCCCTTTACCCCATTACTCTCCTTCTGTCCCTGGCCTTTTCTATATTCACACACTACCCTTTCCCTTTCTCATCCTGCCTCGCTCCCTTCACTTCCCTCCTCCTGCCTGTCTTTTTTACTTCCTCATCCTTTCTTCAATTTATTTTCATTTGTAACATTCTCTGTCCCCCTCGCCTCTCTGCATCACAGCaACAGTTAAAACaCGCCATTCCTCCTCAAAGCTGGAATTGTGGTGCCTGTACTCGGAGCTGTCCCAGGTCCATAGTGCCCGTTGGAAATACCAGAATGAGAGTCGTCATCTGCACGTGATGAGCAAAACCCCTGGCAGGATCGCCACCATTTTGCCCTTACCCATCACCTCAGACACAGCCGGGAACTACACCTGCTCCCTACAGCTGAATAATGGGCGGACTGTCTGGGCAACGCATGCTGTCACACTGCCCCGTGAACGTGTGATGGATGGTATGGTATAACAAAGACTGCTCTGTGTTCAGATTTTCTTAATCAACACTATATTATTTTACTAGGACaGGAGTCGTGGAAGACTTCCTGTCAACTCAGTGGAGATAATGAACCGTGAATGTGGAAGATTCTCGGATGTGTGCTTCGTGAAGCGTTCTGCGGCGCATTCAAGCCAACTTCAGGTCAATCCATCTGCCAGAGAGCCCACGGCTTACGCAGGAAAAAGCTCCTGACAGATGgCATATGTTACGCTTTCTTAATGTAGCTTAAAAGGTCACGGGTCAAAACTTCTGTGACATTGTGATTTGAAAATAATATTCAGCAGGAATAAGTTATTTTGCGTGCCCAAATTTCATAAAAATCCACCACCGTTGTAATACTCTGCTCAGCCTCGATAGAAcaCACAACTTAAAGGGTATCGTTTCTCTCATCACACTCACCAGTTTATAAGCGACGAAAAGAAGACAGGACCTTAGGACATCTCTCCCCACAAAAACTAAATTATTCAGACTTATTGTATTGGTGGCTGTGGGGGAGCACAGGAGGATGTGACAGTTGAATGGATCCCTtAGCAAAGATGAATTCACTCCCCGTTACCTCCAATACATCACTTTGGGTTGAGGGGCCCAGAGCACATGATGATGCACGCTGATGgTACGGCTAAAAGAGTGATGGCAATGGAGGAAAGAGAGAAAGCGTGATTTAACCTaGTTGGAAAGGCAGGATCAGAAAAAGATATTTAATGTGGAATATGTCCGGAGTAACGAGAATCTCCACCTGAGAAAAAGTGACGAGTTTAAATCCGAGTAATGTTGGACGACATATACACAGTTTGAAAGTGACAGGCTGCAATAGTGCCAGATAGCTGTAGTTCTTGGTgGATAATTAATAGTGTGACAATAAGCAGTGACAGTTAAACATGTATAAAGATATGTTTTGGTTAGCATCCAGAAGGTTTTGCAtATTGTTGTGAGAGACGTTACGGTTCACTGGAAAAAAGTTAAATAATCAGTACTGAGAGATATAAATAATTTGGGGATATCTCATCACTACCTTTAGATGTGGTTTACAGCACGTAAACCACATCCAAAGGTATAGTGATGGTTGTAGGAAATAAAAATGTGGCATAATAAAATTAGTTTCACCGATGTCACAGTTCATAAGATGCAAAATTGAAGCAATCATGGCGCTCTGAAGCACATAAAATACTTAAAATGTCAGAGATGTTCTGCAATCATTTGTTATCCTGAGTTGGCCCATAATTTGCAACACATTCAAGCAGTTCTTTGGACTGCCTTCTATCAGCCACACTCCTCTACAATCACACTGATCCAATTCATCCCCCGACTTCATTTGAGATGAAATAGGTGAGAAAGTGCCAATcGAGGAAAGGAAAAGGTGAGATAGAGGAAGTTGGaAAAAAACAGGAAGAGAGAAAGGAGAAATGTGCTAGTGAGAAACTGGGAGCGTTAATGCCTCACTTCACTGCACTCAATTACCATAATTCATACGTTAACGGTGGCATGGAGAACAGAGCGGGTaAGTCTTGGGGTCAGCACTCACTGGAGTATTCCATTAGCAACCTCTACACACACTCACCAATCAATTACAACTCACACGGCACATAAAGATTGATGCCGGCGAAAAGCTGTGACACCGGGACCAAGGTGAAGCTTTTGGGCCAATCCCTCTGCCAGGTTTCTGATAACAACAAATACCGCAGACAAACACCGGATGAATTGTTAAGAAAGGGATGAAGATTCTCTCAAAAGTGGTTGTTGTGCTGTAACTGCCCATTAAGCTGCTCTCTTCATCCAAcGACGTGTGACGCAGCAGACCAGCACCGAGTGCCTCGCTCTTGCTTCTCATGTCGCTGTATTTTGCAACAGTGATGTCATCCTCATCATGTGAACAAACAAATCACGCGTGAGCTCTTCCATCAGAATTAGACTGCTACTTGTGTAATGTTTGTCATAATCACGCCTAAGCCTTCAATTCACCTGTTTTTTTCCGATGCTGCATGGACAGGCTTTAGCTGAAAGACTATTTAAATTGCACAGAAAAAAAACTTCTCCTGGCTTTCCTACATAAATGACTTCCTACATGTTGAGATAATGAGATAGGGAATAGACAAATCATGTAAAGTCAAACTATTCTGGATGGAAGTGGCAGCATCTCTggtctctttggtactgattacataacatgacattacatgtcatttagcaggcgctttaatccaaagcgacttacaataagtgcatcaactaagagtacaaaTACTGATGATTCTTCAGCAGCATGATGCAAATGTATGAAACATGTTTGGTAAATCTCAGCTGCATCATGTCTTAAAATCATTGGCTTGAAGTGGTCACGTAAAGGAAAAGATGTCCCCCCTCTTGACAAACTGGAGAACAAACAGCAATAACTTCTCTCGATGTCATGTAACCACGCAAACTCTGAGCTCGACAAGTTTGATATTACTGTTCTTGGAAGCAGTCACAGCTCTCACTTTTTTCCTCTCTTTTAGTCGAGGGTGTCAGCGTGACCACCCCCTCCCTGCTCCCTTCTCTCTCTGCTTTATTACTCCTGGTGCCCCTGGTTGCTGCAGCTGTCTGTGTGTTGCTATGGAGACAGAAACACATTTCTGATCGCGGTGAGTCTTCCGGCGCTTTCTTTTTTTGACAGCTTCCCGTGTTCTGTCCATCTTTTGCTCCTGTCGGCTGCCACTGAGTGATGTGGGCCGTGACATCCTCTGGGGTTGTTGTAAtgaatctgctcctacgtcccccactcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgggggcggctatatTGGTAACTCTCCCTCTTTACTCAGGTACTGAGCAGTCTATGTCTGTGCACTCAGGTGAGGCAGAGAACATCTATGAGAATCCTGAGGATATCAGACAGGTGATGCATTCAGACATTTTCAATAACTAAGTGATGAATTTCCCTCCTCATCTTCACCTCTCCCACTCCTCCCCTCTGGTAACACtctttctcttctcttgtttttatttctctcaccctgccctcctctttcctgtctctATTGTGCACTTTGATATGTTTTGCTTTCCTCCTCTGTCTTGGGTTTCCCTCTGATTTTCATTATCCCTCCCTCTCTGTCACTTGTTCATTAAACCTGTTTTCTTCACTCTCCTCCCTTCCCAACAGGCTCCTTCCCTGGGCTCAGTCTACATGGTGAGTTATTGTGTCGTCCCTTGCCTACGCACAAAGGCATGGTGCATATGTGTGTTTGTAAGGAGATGTGGCACACACATCTACCAAGGCAGACAGACTCTCTATTGCTTCTTCCCTAAGCTGTCAGCAGAGATGTCTTCCCTCACATTTGCAGCCCTCTCAGATAAACTCATTGTCTATCAACTGTCACTTTTACATTAGTAGTATTAACAAATCAATCTCATTACACAGGGCACAGAGGGACATAAATCTGGCCCAGAACCATGAGTCTTTACTTCCTCTTTCTCCTCCACTTCACTCACACTTTCCCTGCTTTCCTTCTCCCTTTTCTTCTTTATGCCAGGATTTGAAGCCAAGAGGAGAAGATGATGTCTATAAGGAACTGGAGCGGATGGTGGCTAGGGAGGGCATGCCTACCACTTTGGTCTGCACCGATACAAtAGTGAGGGGTGCCGTTGCCATCAACTGGATGGTGAAGTCACTGGATGAATGGAAACTGGTTCTCTCGGCCAGCGAAAGCAAAAAGTTCTCCGGTGGTGCCTCAAAGGCCTCCAcGCGATTGACTGACCCGAACTTCCAAGATACCGGGGTTTTCTCCTTGTTCCTTGTTCCCAGAATGGAGGACAGCGGTCTCTACTCGTGCTTGATAAAGCAACAAGAGAGGAAGTTGAAGGAGAAGATTATCCTCTTAGCCATTCTTACAGTCACCGTTCTCCCCGCTGCACCCATCCCTCAGCTGAGCACCGTGCGGCTGGCTGCCAGAGTTAATCCTGGCTATGCCGTCAAGATAACCTGGGCAGCACCTGGCGGCATTTACATGAAGAGCAAGAAAACAAACACAGACACAGTGACCAAACTGCCACTGGTCCAGAAcAAGGACGGAGGGACCTATGTGTGCATGGTGCACCCGTGGGGTAACAGCAGCAACACTGTGTTCGCCTTCGATGTGGACGTGACGGTTGATGCTTACAGTGTGGCCTCATTCACCAATATAACATATGAGACGGAGATCTCCACCGCCACTCGGGCTCAGACATTGTTTCCATTGACCTGCCCTGGTGTCCAAGGGGACTACGTCCGGCTTCACTGGCTACCTCCAGACAGCAAGAaGCACAGTGAGGTAgAACTGGTGTACCAAAATGACAGCTGGGGGGGTTTAACCTTTGTCACCAAaCACAACAAGAGACTCCAGCTCGCTGGCCCCCCCTACAACGCGGAGGCCGGGAGCTTCTCCTTTCTGCTCACCCCTGAGTTAAAAGATGGCGGCCTCTACATCTGCGAAGTGTTCCTCAATGACATCGCCGTCAGCCGCAGGACCACGCTCAGCGTGCTGACAGCaACAGTTAAAACaCGCCATTCCTCCTCAAAGCTGGAATTGTGGTGCCTGTACTCGGAGCTGTCCCAGGTCCATAGTGCCCGTTGGAAATACCAGAATGAGAGTCGTCATCTGCACGTGATGAGCAAAACCCCTGGCAGGATCGCCACCATTTTGCCCTTACCCATCACCTCAGACACAGCCGGGAACTACACCTGCTCCCTACAGCTGAATAATGGGCGGACTGTCTGGGCAACGCATGCTGTCACACTGCCCCGTGAACGTGTGATGGATGTCGAGGGTGTCAGCGTGACCACCCCCTCCCTGCTCCCTTCTCTCTCTGCTTTATTACTCCTGGTGCCCCTGGTTGCTGCAGCTGTCTGTGTGTTGCTATGGAGACAGAAACACATTTCTGATCGCGGTACTGAGCAGTCTATGTCTGTGCACTCAGGTGAGGCAGAGAACATCTATGAGAATCCTGAGGATATCAGACAGGCTCCTTCCCTGGGCTCAGTCTACATGGATTTGAAGCCAAGAGGAGAAGATGATGTCTATAAGGAACTGGAGCGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11422	T-CELL SURFACE GLYCOPROTEIN CD4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0035723	Biological Process	interleukin-15-mediated signaling pathway	Interproscan
GO:0042110	Biological Process	T cell activation	Interproscan
GO:0042289	Molecular Function	MHC class II protein binding	Interproscan
GO:0045121	Cellular Component	membrane raft	Interproscan
GO:0070374	Biological Process	positive regulation of ERK1 and ERK2 cascade	Interproscan
GO:1990782	Molecular Function	protein tyrosine kinase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-