Gene detail

Detailed information of HS19537 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19537	TAPASIN	chr22	14803167	14806488	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19537

ATGGTGACTGTAGCCTTTGTGTTTGGATTCTTGCTCACGTGCGTTTGTGGTAAGAGCGTTCATCTTTAATGACGACAGTgGCACATTATACATTTAcCTTTAGATTATCATaTTCAGGAAAACACGTTTTAGTATTCAGTTCAGTGTCTGAGAGAGACCTTGTTTTaGCTTTGTGAATTCATGGAAATAGGCGCTGAAATATAACTAATATTTGGTAAAATACAGTCTACATTTTGTACTTAATCAAATTAAATGAGTCAGATTAGCTGCTGATCGATTCTAACCTAGAACATGTTTCTTGGTGCATAGCAGTTCATCTGAACAGTTTGTCGCAAGGCAAGTCAACACTTAAcATATATGAAAAACAACgTTTTTATTAATAACTGAATGATGCGTTAATAGTCAATTAAAGGGAGCAGTCTGTTAAAGTACAGTCCTGTGGAAATCAATCGTTGCTTTTAATGTCAAAACAACTAAACAAACTGTAATAAGTCTCCGTCAAAGCCCTGTTTTTCATTTTCCTATAATTTCTAACAAATTACATAATTGTTCCAGAAAACATTTAATACATTATTAGATAGTAACGGACCCATAAATGAAGCTATACTGCTATTTGTGTTTAAtAGTCGTCTTGTTTACCTGAGTaTGTTAAAGAATGTAAACTTTTGTCTCCTTGTTTCTCAGCTGACAGGGTTGCAGATGTGGTACTTTCCTGCACCCTggtggaggagggagtgggacttggtggcgtgggaggtggCTCACTCTTCACACACACCCCAGCCACTCTGGTCTTAAGAGACGTTCCAGTGGCTTCTGACGAACCACTTGAAACACTCACTTCGTTTGTCCCGCCTTCAATCCCTGACCCAGATGCCCTCCTGTTAGAAGTTAAAGGTGTTCCTGCCTTCTCTTCGTGTCAGTTTTGCTGTAATATAAGCACGACCCTGTGTTGAACTTCTCCTTTCATCCCTCTGTGGCAGTGGCATCGCCTGAGATCCCCAACACACACGTGTTGCTCCATGCGGACTGCAATGAGCAGGAGGTGAAGTGCGATATAAGCCGTTACTCTCCTCGTGGAAACCAGGAAAGTTCAGGATCAGCTTTTTTTATGGTGTCTCTTAATGTGGAGGGAGGTGAGTTCAGCACCGTGTTGATTCTGCGGACTTTGGCGGTGAAGAAGGACCATTTGACCCTCATACAGAACAAACTGGGTCTGCCTCTGAGCCAATCGGGAACTCTCCTGACCGAGGGTGAGATCCagtgacagttcacccaaaagtcaaaaagtatttttcctcttccctggagtgaggttcttttggacagacggacattcagacgtctgcgttctctccaatataatgagactttaagacaccaagcttgtggtgctcaaagcgccgtaaagattcatttgaaaagctcaccagcagtaagtctgtccagaagtcatgacccggttTCCACAAACTTTGTTGCgagacattgctgttgagtttttcgaatgcttttggcactttgagaaccacaagcccggagccatattgtcccattgcattgaggacaaagcagacgtctctatggccgatacctttaaaactatctaaattgaaaaatgagaggaatatgtattttttcgattttgggCCTTCAATATCTCATTTCATCTTCTCATTGAATCGTTCACATTATCACTCTCACTACTTTTGTCTTTCCTTTCTGTCTCTCAGTAATATTCCTGGTtTTTTCCCACGAAAAGTCTGTGTCGGCCCCTCTGAGAGGCGACGTTATCCTCAACTGTGGCTTCAAGCAGCAGGAGATACCTTTAGCGCAGGAAGTGTCCGTTGAATGGCGACTGCAACACAGGGGAAAAGGGGGGAAAGTGTTTGAAATGATGACGAGGCTGGACGAGGCCGAAGGGAGCACAGTGGGTGAGTGCTGCAGAAAAAGGTCCGACCTCTTCTGGTTCATCCTGGGTCTTGTGGCTCTGAGAGTGACAGCACTCATAAAGTTGGAGAGCGTATATTAGAAGTGGCTTCAGTGGCATGCAAGTTCATGAATATACAAATACATATGGACTCAAAATAGTCATTTACAGTGAGGCAAATgTCACAATCACAAAAGGaGACCAAAGCTCTTCGGCTATCTGGACTATAGTTTCACAGCTAAAcGTCAGAAAAGTGCATAAAACACACAAATGGGAGAGGGCATGAAGACAGCAGTACCGATCTAAGTATGTGAAATAAAATACTTTCTTACTATCGTAAAAGGCTCCAGGCCGAGCTCGTAAGAAGATCTTGAGATGAGATCGTTTTGTCAATTCCTGTTTCATTTTCTGTCGTCAGTGCATGCGGAGAGAAGGGGATCGAGCATGGcCGCCTCCCAGGTGGTTGGAGAGGGTAACGCCTCTGTGACTCTGACCAAGCTGAAGCTTTTGGACGAGGGGACCTACATCTGCACTGTCAGTATTGGCATTGTCCACGCCCAGCAGGTCATTCAACTCcAGGTTGTTCGTAAGTTTGACcCTAATCTAAAAATTCCGATAAATCCACTGATTTGTCTTTTCATTTCATGTTCTGCTTCTCTTTGTTTCAGAACCACCTCGTGTTTCACTCTCAGAGGAGAAACAGTCCCAGACGCTGAGCTGCCACTGCGCCACATACTATCCACTGGAAGCTCAGGTGTGTTCCCGAGCACATTGAAATGCACCTACTTTTATGAAACTAACTTATGAAACATGCTATAGTGATCAAGTTTAACTGGGTGATTCCCAGGTCACAAGTCTCTGCTGCCTCCTGCCTTTCAGATGCAGTGGTTATCCCTCTCACCTGCAGACACAGAGCCCACAGTGCTTCCAGATCAGGGCTCTCTGTCCAGCCATCGACAGCACGGTGACGGGACGTATTCCCTGTCATCTCATCTCTCTGTGCCCCCCACCGTCTCCCCTGGGACTACAATTACCTGCAGGGTGTCTCACCCAGCCCTGGATGGCCCTCTCTCCATCAGTCTGGTGGTAGAAAGACCACAAGCAGGTACTAATGTGTAGCTGTTGCTGCAATGTTTCACTGCAGAAATAACACACAACAAAATCATGCtatttaaaatgtatttaaccaggaaaagcctcattaagattaaaaatctcctttaacggagcTATGAGGTAGTTGATTTGTATGACATCCTGTATCATGTACTTAACGACAACACTGTCTACAAATCCGTAATCCTGCTCTGTGTCTTTCTCGCTACAGGTTTCTACTGGTGGCTTCTGGGTTTCCTCGTCGTCACTTTGCTTTTCTTCTACAAGGTCATGAGAATGGTGACTGTAGCCTTTGTGTTTGGATTCTTGCTCACGTGCGTTTGTGCTGACAGGGTTGCAGATGTGGTACTTTCCTGCACCCTggtggaggagggagtgggacttggtggcgtgggaggtggCTCACTCTTCACACACACCCCAGCCACTCTGGTCTTAAGAGACGTTCCAGTGGCTTCTGACGAACCACTTGAAACACTCACTTCGTTTGTCCCGCCTTCAATCCCTGACCCAGATGCCCTCCTGTTAGAAGTTAAAGTGGCATCGCCTGAGATCCCCAACACACACGTGTTGCTCCATGCGGACTGCAATGAGCAGGAGGTGAAGTGCGATATAAGCCGTTACTCTCCTCGTGGAAACCAGGAAAGTTCAGGATCAGCTTTTTTTATGGTGTCTCTTAATGTGGAGGGAGGTGAGTTCAGCACCGTGTTGATTCTGCGGACTTTGGCGGTGAAGAAGGACCATTTGACCCTCATACAGAACAAACTGGGTCTGCCTCTGAGCCAATCGGGAACTCTCCTGACCGAGGTAATATTCCTGGTtTTTTCCCACGAAAAGTCTGTGTCGGCCCCTCTGAGAGGCGACGTTATCCTCAACTGTGGCTTCAAGCAGCAGGAGATACCTTTAGCGCAGGAAGTGTCCGTTGAATGGCGACTGCAACACAGGGGAAAAGGGGGGAAAGTGTTTGAAATGATGACGAGGCTGGACGAGGCCGAAGGGAGCACAGTGGTGCATGCGGAGAGAAGGGGATCGAGCATGGcCGCCTCCCAGGTGGTTGGAGAGGGTAACGCCTCTGTGACTCTGACCAAGCTGAAGCTTTTGGACGAGGGGACCTACATCTGCACTGTCAGTATTGGCATTGTCCACGCCCAGCAGGTCATTCAACTCcAGGTTGTTCAACCACCTCGTGTTTCACTCTCAGAGGAGAAACAGTCCCAGACGCTGAGCTGCCACTGCGCCACATACTATCCACTGGAAGCTCAGATGCAGTGGTTATCCCTCTCACCTGCAGACACAGAGCCCACAGTGCTTCCAGATCAGGGCTCTCTGTCCAGCCATCGACAGCACGGTGACGGGACGTATTCCCTGTCATCTCATCTCTCTGTGCCCCCCACCGTCTCCCCTGGGACTACAATTACCTGCAGGGTGTCTCACCCAGCCCTGGATGGCCCTCTCTCCATCAGTCTGGTGGTAGAAAGACCACAAGCAGGTTTCTACTGGTGGCTTCTGGGTTTCCTCGTCGTCACTTTGCTTTTCTTCTACAAGGTCATGAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07654	C1-set	Immunoglobulin C1-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003597	Domain	Immunoglobulin C1-set	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008056	Family	Tapasin	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR050380	Family	Immune Recognition and Response Modulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23411	TAPASIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0002502	Biological Process	peptide antigen assembly with MHC class I protein complex	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019885	Biological Process	antigen processing and presentation of endogenous peptide antigen via MHC class I	Interproscan
GO:0023024	Molecular Function	MHC class I protein complex binding	Interproscan
GO:0042824	Cellular Component	MHC class I peptide loading complex	Interproscan
GO:0062061	Molecular Function	TAP complex binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-