Gene detail

Detailed information of HS19532 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19532	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A	chr22	14761030	14766512	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19532

ATGAACATTCATGTCGAGGTATGGCCCCGGAGTGAAAGAGATACCCCTCGGTGCGACAGTGGTGGTCCAGGTAAGTGGTGAAGTGCGTGTCAGTCCGCGGGAAGTAGACCGCAGATAGACCCTCTGGTGGGCGTTGTGTGGTCAGTAAAACCGAAACCAGCGAGACGGGCAAGAAAAAAACTTCGTAGATTTAGTTCTCACGCACTTCAACATTATCTACTCACATGCAATTTGTCGGATTGACTTTTATAAGTTTTCAAGTGAATCGGTAAATCACTGCGACCGGGAAGTGAGGCGCGAAGCTGCCGACAAGTGGCTCTAAATATGCAACAGTCGTTTTTTTAATTCTATTGTCTGGAGACCAATAAATTCTTTTTTCTTCACTAACTTTTGTAGGCCTACATATTCAATAAACTAGCCTGACTTTAGTTTTGTAATGTTTGTTAAATCCCCTTCAATAACTCAcaaaGTGTTATTTCTAGCAGAGGAaAATCTGCATTTAACATTTTTAAAGAGTCTGCCAAGAACTTTCCTTTGTTTTCAAATAAGTTATATGATAATATGTCTTATTTAAACAAAATAAAATGCAGTGCATTTTGCTTTTGATCCAGATATGAATCAGCAGTTGTTGCTTATCTCTTTGCAGATGGTTTTGGTTTGTCTGATTATGTGTTGAGAAAACCACCTAAAAGTTCTGTTTTCATATTAACTATGTATTTGTCATAGAGTAGTGCCTTTGTTGTTGATCCTGACGAATAATAAACGCCTCAAATGAAATTTCCTTGACCACCATCAGAGATGGATGACTCAAAACCTCAGCAGTTGAATCAAAAACAACAAAAAACATGCTGGTTAGATAGATGTATGTGGAAAAACTCTTTTTAGGAAACGTGTTGGAAATATTTAGAGAAAATGGTTTGTAGTAATTTGTAAACAGTAAATGGGAATAAGCACCACTAAAGCACATCAAACACTGACATTTAAGGCCCTTGTTGTCCTTGTGTGCCAACAATGGGCCCTAGCAGGATTATCTGCACATGATTGTATTTAGATTTATTATTCAATACAACTTTGCTCGAATAAGAAACCGTGCATTAGCTTTGTAAAACATCAATAGTTAGTAACATGTCATGATAATAATGAATgcatattttctcgtttctgttctcctatgagagggaattgaatatattttagttgtggacaaaacaagacatttgaggatgtcatcttgggctttggaaaaggttgatcaatattttaaactaAATTTAACAGATTAATTAACAATGTAAACGCTCGCTATTTGCAGCCCTAACTGTTTGTACATACATTTTTTTAACATTTCTGTCCCAGAGATGCCACCTCTGAGTCGGTTAGTCAGATAATCTGTTGTTTTGGTTTTATTCAACAGTGATTTCTTTTGTGAATTAGTGTTTTTTAATGcttttttcatggtgaataacttatttctcaaaaacttatgagcacgtctctggtaaacacgagattgaaagtagagcttttgtgtgattctttgtggagaCGCCTGACGTGTTCATCGACAGCCCGAGCTGACCATGTTTACACGTCAGGGAATACAACGGGAAAGACATTCAATTATTTGTTTGAATGAATAGTGTAGGGCCCAGAGCATGCCGTCTGTCCGTCACTCAGCTAAATGGACTCTGTAATACCCAAGACCTGTGAGTTATAGCACTGGCTGTTCGAGTTGTTTTAAAGTTGGCTTTCCTTTCATGTCTCTTCAGATGGATTGAGCCAAACCTGTAAGATAATGGAGGGAGCTGGACACAGGGGAAGATGGGAAAAAACAAACCCTGTTGGCACAACACTGCTGCTCCTCATGGTGAGAACATCTTAAGTGACTCACTAAATACACAAACAACTTCCCTGTGACGGACAAACAGCTTTTCCATGTATATTCATTGTATGTTGTGTGTTGCAGTGCATGTTCATCCCCACTCTGACGTTGTTAGAGCCTTCAGAGGAGCAGATGTGTCCACATGGGGACTATCCCACTGAAAAGGGAATCTGTTGCAACAGATGCTCTCCAGGTACTGTGTGGCCTTCAGCACAATGCGCAGGATTCAACaCACAGGCAGAGACTTCTTCTTCTACTGTCACATCCATTCTGCAAAGTAGCTGTGTTTACATGTGACGGCCGTGTCTTCCAGGTTTTAAGCTTGTCGAGAAGTGTAATGCTACGGGTCAGAGAAGTACCTGCACACCCTGTCCGGCAGGACAATACACAGACCAGATGAACTTCTTCCCCAACTGTCTAAGTTGCAGGCGCTGCAAAGGTACGGCAACATGGCCTTCTTGTTCTGGTCAGCGTGGCGTTAGGTTATGGTTCGCTTTGTCCACCTTTTCAACTTCTCTGCAGCATCGAAGCATGAAGTGGAGGTATCACCATGTAAAAGACCGCAAAACGCAGTGTGTCACTGTGAGGCCGGTTATTACAAGTCTCACATCGACTCGGAAACATACGAGTGTCACAGATGTACACAATGTGGACAGGACAAGGAAAAGGAAAAGGAAACATGTGAGTCTTAACACCTGGTAATGTTATACGAGACCTGAGTTATCCCCATGCAAAATAATTTTCTGTATTCATTCTGTGGCTCAAGTATTTCCTCAGTCTAGTTTAAATATAATGTTTCTTGTGCACAGGTACAGCAGAGAAGAACACCGTGTGTCAATGTACAGAGAACTACTACCAAGCCAAGGGCAAGTGTAAACCCTGCAACAAGTGAGTATATATGAATGAGTGTATATGAGCTTGTGTACAGTCATTGGTCCCATCCTGCTATTTGGGATGCTCTTATTTAGACTTCTTATGGGGAAGTTGGTTTGTTGAATTGAAACTTGCGGCTCACTTCCGCCTTTGTTAAATCTTTCCATTTGTTGGCAACAAAAGAGAGAAGTTACGACACACTGCAACTGGGTGACTGGTGTTTAAACATTTACTAAACATGTCGGGCCTCTGTGTTACCCAATGTATGCCTGGTTCACTGAGACAGGACCCCGTAGTCTTGTcGTCCTACGGTAGATTTTTaAAAATATCTTTTAAACTTTTCCATGGTAAAAGGCTCACAAAGGCATTAGAAAAGGTAATTATTAGTGAAATATAAAAGTGGCAGCCTAGAAACTCTAATCAGGTTCATCCCTTCAAAGTCTTTCGTTCAGTGAGGAATGGGTCCAGTTAGTATTCGTGGAGTAAATTGTAAAGTAGGTGGACAGACAAAGATATTTCTCTCTGTTAAAAGAGGAAATGGTAGTGGAGCCCAGAGGAACCACAATCCTTAGCTACTCTCTTAGCTTCACTTTTCTTTCAACTGGTACCAGTTTTCAGTGGAGTATCACCTGTGAAACCATATTTATCGTaTTAATATTCAATTGTTTGAACTCTGGCTGTGTTGAAAAAGGCCTGTCAGTGTTTGTGGGAATTACTTCCTCTTAAGACGTGCTACTTCCCCCTTCATGTTGTAAAATGTCCTCTCTTTTCCTCACAGTTGTACCGCTGAGTGCAAACATCACTGCTCAGACCCCTCTTCTCTGAATACAATAGGTGAGCTCTTGTGACAGGGACGTGATTATCTGACCAGCTTTTCGGAAGcGTTAATACACTGGCACTATGAATTATACAAGACCTGGTTTTATTCTGTGTTTTCTATGATGTTCAATGAACTACAGCTGCACTGTCGTGACGTTGTTATCCAGGTGTTGGAACAGCTGTCTGACATGAACATCGGCTCACTGTCTTATGGACCAACCAGATGGTTTTATCTTTTTTTtAAATCTACATTTTATATTAATTAATGTTAATACTAAGTTAAAATGTTTTGTCTCTAAATATTTAAGGgcaattaatcataccaattaatcatacACGGCCTGTTTAGCCaaatcatataagcaaataccttttgaattaagtacatattttgtgcaaaagagtgtgcagatgtgtgcacacgctgtgtgtgtatatggaagagagcatttgttaTAGAGCAAGTACACACATACACAACTTTGCATAACGGCCaCTTCTTTGTGCAGTTTCAGTCGGCACCTTCAGACCCGTAACGCTACAGCTAGCTACTGTAGCCAGGAAGATAATTCTATCAATATAGGCAAATGTGTCAGTTTGAGCAGAAACTCAATTTAACTCgAATCATGTTCAACTCCTCGGTCCAGGCAGCCTCTTTGTCGATCACTTCTATTTATAGATGTGGGTTCTTTGTTTTGTTTCATtGCAGCAGAATGTCGTTCAGTCTGAAAACgTGATTGTTTTTTTAACGTGCATCCATCTTCATGTCTTCTTCCCTATGTGCCTCTTCGGATCCTTATGCAGCTCCTAAAATTGATGAACATCTTATCAACATAATTGCTGGAGTTGTAGTTGTTACTGTaGTCTCGCTAATGCTGGTGGTCCTCATCACCCACGTGGCCACAAAACGGTCTACGAAGAAGAAGTTGCTGAAACTCACCACCCAACCATCGGACGTCTCCCCGGACTCATGCGAGGTACACCGATCCAACAGTCTGTGGTTCTCAGTGTTGTAGTCAAGATTCCTCTTCCCCTATGTTATTGTCGTATACTTCATATGTGTGtgtttgtatcagtgttccatgagaaatgtcttgagaaaataaaagtttgggtattttttgtctgagcgatcaccgtaatgatgataacaaacacatcGACGCACAGAGAGTTGAGCGGTACCCTTGCCGACATGGCCGTCTTGAAGTCAAACCCAGAGTTATTTTTGTCTGAGATCGAGACTGGTTCGAGTAAACTGGGTCGGTTCCGATGAATGGCTGAGACCCTCAAAGTGTTTCTTGTGAACAACACTGGTGGCTACTTTTTCTCTGCTGGATGTGCGCCGTTGACAGCCACTTTTAATCTGCCCTTGTCTCATAGCAAGTCCTGGTTCACAGTGAGGAACCTTCAGTGGACATGAGTGTTTGGGCTGTTCCCCAAAGTCATGCCAGTGAACAGGAGTCATCCAATCTGCCCGACTGTGTCCCCCTGGAAATCAGGAGTGAGTGTATTTTATACTTTACATAGCAGCAGGATACAGGAATCTATTGTACTAACCTGTATTTctccccttcaacacccccccccctccctctccttccctccTGCAGTCCCTGAcCTGATCTACACTGTGCTGGATCTGGTTCCCGTGCCGCAGGTGAAGCGGCTGGTGCGTTCTCTCGGCGTGAAGGATACAGAGATCGAACAAGCCGAGACGGATCACCGGTCCTGCCGCGAGGCTAACTACCAGATGCTGAGGCTGTGGGCCGAGAGAGGGCCACGTGCCGGTGGAGGAGGTCGAGGCAGAATGCTGCACTGGCCCTTGTTGCACGAGTTGTTGGACAAACTGAGACTGATGCACTTGGGcCAAGCAGCCGAGGAGCTGGAGACAAAGTTCGGCATTCAGATGAACATTCATGTCGAGGTATGGCCCCGGAGTGAAAGAGATACCCCTCGGTGCGACAGTGGTGGTCCAGATGGATTGAGCCAAACCTGTAAGATAATGGAGGGAGCTGGACACAGGGGAAGATGGGAAAAAACAAACCCTGTTGGCACAACACTGCTGCTCCTCATGTGCATGTTCATCCCCACTCTGACGTTGTTAGAGCCTTCAGAGGAGCAGATGTGTCCACATGGGGACTATCCCACTGAAAAGGGAATCTGTTGCAACAGATGCTCTCCAGGTTTTAAGCTTGTCGAGAAGTGTAATGCTACGGGTCAGAGAAGTACCTGCACACCCTGTCCGGCAGGACAATACACAGACCAGATGAACTTCTTCCCCAACTGTCTAAGTTGCAGGCGCTGCAAAGCATCGAAGCATGAAGTGGAGGTATCACCATGTAAAAGACCGCAAAACGCAGTGTGTCACTGTGAGGCCGGTTATTACAAGTCTCACATCGACTCGGAAACATACGAGTGTCACAGATGTACACAATGTGGACAGGACAAGGAAAAGGAAAAGGAAACATGTACAGCAGAGAAGAACACCGTGTGTCAATGTACAGAGAACTACTACCAAGCCAAGGGCAAGTGTAAACCCTGCAACAATTGTACCGCTGAGTGCAAACATCACTGCTCAGACCCCTCTTCTCTGAATACAATAGCTCCTAAAATTGATGAACATCTTATCAACATAATTGCTGGAGTTGTAGTTGTTACTGTaGTCTCGCTAATGCTGGTGGTCCTCATCACCCACGTGGCCACAAAACGGTCTACGAAGAAGAAGTTGCTGAAACTCACCACCCAACCATCGGACGTCTCCCCGGACTCATGCGAGCAAGTCCTGGTTCACAGTGAGGAACCTTCAGTGGACATGAGTGTTTGGGCTGTTCCCCAAAGTCATGCCAGTGAACAGGAGTCATCCAATCTGCCCGACTGTGTCCCCCTGGAAATCAGGATCCCTGAcCTGATCTACACTGTGCTGGATCTGGTTCCCGTGCCGCAGGTGAAGCGGCTGGTGCGTTCTCTCGGCGTGAAGGATACAGAGATCGAACAAGCCGAGACGGATCACCGGTCCTGCCGCGAGGCTAACTACCAGATGCTGAGGCTGTGGGCCGAGAGAGGGCCACGTGCCGGTGGAGGAGGTCGAGGCAGAATGCTGCACTGGCCCTTGTTGCACGAGTTGTTGGACAAACTGAGACTGATGCACTTGGGcCAAGCAGCCGAGGAGCTGGAGACAAAGTTCGGCATTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00020	TNFR_c6	TNFR/NGFR cysteine-rich region	Domain	Interproscan
PF00531	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR001368	Domain	TNFR/NGFR cysteine-rich region	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR052493	Family	Tumor necrosis factor receptor superfamily member 1A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46861	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 1A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005031	Molecular Function	tumor necrosis factor receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0043120	Molecular Function	tumor necrosis factor binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0045121	Cellular Component	membrane raft	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-