Gene detail

Detailed information of HS19389 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS19389	CYTOKINE RECEPTOR	chr22	12795754	12800693	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS19389

ATGCGGATTGTTCTCCTTTTGCTGTGCGTTCTGTGCGCCGCGCGGGTCCGGGGCGCTTTCGACGGAACCTGCCCCAGAAAAGGTAAAAAGCCGAAGCTTTGTGATTTATCCTGCTAAGTCATTAAAACAATCAAGAACGTGTTGTGAAGTAATAGATGTCACTCACAGGAGTTTCTCATATTGTTGACGTGTGCTTTGTTTGTCAGGACTGTGAAACATCGTTTAGCAAACGTTTATATTCCGTGTTTTTTAGATAATATTTACAGAACTTGAAGAAAAAATAAGGAACTTATCTGTATTATCATTCTGTGTTTTGTGTACGTCTACATTTCTGTTGTGTAGCTTTTGGTCGAAACTCAGAGAAATGTTCTTCATAGCCTACTAGCCTATATTGTTTTTAATGTTTTTTAATTTAACTTTTGTTATTTATTTTTTCTTGAAGGGGTTGAAGTTCCTTTTTACTTTGATGTCAACAAATTAATCAAATTATGAATGCAGGTCAGATACATTCTGGGTCAGGCATATTGAAATGATAGAATTAAATATGTGTAAATGTATTCAAACTAAATCCCGCACACGCAGGCGCACACGTGTTCTTCTCTCAGCTGCAAACCCCCTATTGAACTGAACTGTCGGAAAGTGGAATGATAGGAGAGAAAGTGTGCACTAAGGGCAATGGACAGGAGTATATGCGCTTCTCAAGTCATAATTGGTTGAGTTTTGAGTGCAATCAGATAATCTGTGTATTTAGGTGATGGCAGAAATGTAAATAAGTGAGATGACAAAGAGAGGGCACAGAAAATAGAAACAGTAAAAGAGGAAGTTAAGATGGAGTTGGTTATTTTGGTTATATGCAATGTTGCATTCTCTCTGTGCCGTGCGTATCGTTGAGAGTACTCAATGGGAAATAATTTTGTGCAAAATACTGGTTAAATGTACAATAAAACAAAGTCTGTCTCCGACGTACACAAGTCATaACACTCAGCACACCCGTTGGATTACATAAGATGTGTAAATGATGTTTGTTTCTCTGTGCAGAGCCTCCACCTGGTGTGCTGGTTGTATCCCAGGGCAGTAAGTTGGTTTTGACCTGCAGTGGCCGTGTGGAGGTGGACGGGGTGAAGGTCAGCATTCACAGAAACAGTGCAAACATTAGAAGAGGGAATTCCTCTAATGCAACCCCAACCACTGAAAACATAATCAGCGAAACTGGAGTCTGGATGAAAATTAAAAAACATCCTGTGAATGAGGGAAAACAGCCCAACTCAACTTTGGCTGGAGAAAGCAGAAGCCTCGGACTTACAGGATATACAGCTTCTACCAGCACTCACACAGCCCGGCCAACCAGTGTGGACAGACAACTAAAGGGTGAAGAGATGGATGGCATGGGCGATTATGAGGAAGAGGAGGAAGCGGAGAAAGGGAGCAGAGTTACAAGGGGCACAAAGTCAAGGCTGCAGTGGAAGTGGATGAGTCGGACAGTGAGGAAAGGAGTCAGAGACCGGGGAGAAACCACATTTGAGAGGAGAGGGGCTGCACTGTCTCTGTCCCCGGTCAGACTGGAGGACTCTGGGAGGTACACCTGTTATCACCGAGGCAGAGAGAGGTCCTCCTTCCTCATACACGTTGCAGGTGAATAGTGTTGTACGTGATGATTGAAGTTTAAAGTGTTAACTTGATCCATGGGATGTTTGTCCTTCGCTCTGTCATTTGTCATAACACTTCTTCATTTTACGAACGAAACAAAAAGGTTAACATTGGTGGTGGGTTTCTGTATAAAGTATAGTATTAGTCAGACGTTGCAAAGTGCATTATGCGACACATTCAGAATGTAAGTGTTCATGAAAGATGTACTCACAATCAGTGTGAGTTTGTCACACTGATGCATTAGAACAATGAGATGGTGCATCAGATATTCATGAAGGTCTTGATATAACATTATTTTTCATACATATATACATTCTTTAATGCATACGTGCTGGTGGTATGGTGCCCtgcttttctctgttttacgtcattgttgattcaatatttggttgtttgggattgttatttggacaaaacaaagaaataaaaatgtcatattgaactctgagaaagtattatggctgttttttattcttttgaaaacAGCTCATGAAAAAAATATTTGACTAAAAAAATGATTGAAAATGAACTGAATGATGAGTATACAGCATCACTGCATGTCTTCTCTATGTGTTAGATCCTCCAGAGACTCCCAGCCTGTCCTGCTACAAAAGGTCACCCAGCAGTAAGATCCGCTGTGAATGGGCCCCTCAGAGGCCCCTCACGATATGGCCGAACTGTTACCTCCTCCTTAGTAAAAGGTAAAGACAGACACTGACACTACAACTACCCAATGAATAACTTATATGTGTGTGTGTGGAGGAATAAATAACCATTTTCAAACAAACCTTTAACAACATTACAAACTATAATTGAGATGCAGTTTATTTTCCGTCTCTTTGTCATCCATCTCACCCATCCTATGTGAGTGAATGTTGTCCTTGTTGTTGTTTCCCTCAGCCCCACACAGGCGTTCCTTCCATCGCAGTGCTCATACTCACATCGGAGCTCCCGCTGTTGGTGTGCTCTGGACCACAATGAGGACGAGCAGAGAACCCTCCACATGGCCTACCTGTGTGTGACGAGCATCGCAGGAAACGCCACCAGCGCCCTGCTGCACTTCCTACCGCTAAGCATTTGTACGTTTGTGGATGGAGGCGGGTGTGTGTCCATGCCACGTGGGTGTGTTTGCTTGGATGGAAAGCTCTTACTGGATTCCTCCTTGCTCCCTCAGTAAAGCCTGACCCTCCATCGGATGTGACGGTTCAACAGGAGGAGGGACAAGAGATGAGGATGACCGTTACCTGGAGTTTGCCGAACTCCTGGAAGTCTCAAGAAAGCTTTTATGTACTAAACTACGAGATCAAATACCGACCTCTCAAGTCCTCGTTATATCATGGCCAGGTGAGGGCTACTGGACAAATACTTTCTGAGCATGCACCGTCGGTGTGAGTGTGTTTACTGAACACACCCGATGTGTGTTTACCTGGTTGTCCCTCTGTATGTGTCCATGTAGATACAGGCGGTGAAGAAGCGCTCCTACACAATCACTGATGCAATGCCTGGTGTTGAGTACTTGATACAACTCAGAACCAAGGAAGAGTACGATGGTCAGTGGAGTGACTGGAGTACACCTGTCCAAGCCAGCAGCTGGTTGAGGTCAACAAGTAAGCACACATGCCCACATGCACACAGTCATACATGAAGAAATAAATGTATCAAATTAAGCCATTTCAAGATGGGGACATGCGCTTAGTGAAAGCTGTTGTTTGTGGTAAACTCAAATTAGTATGTTTTTCTTGTTCAGGCTTCCAGCAGGCAGAAAAAGTTTGTTATTGGTTTTAGAGACATTAGTGACGTAGATGACAGGGACCTGTAAGTCATTGAGCTTTATGATCTTTGTAATACATGATCCACCCTGGACACAGACAAATGCTGCCATGGCGACCAGAGGAGGAAGGGCTCCTGTTTCCTTCCTGTGTGATTGGGTTTTTCCAAATACGCTGTTCAGAAATCACCCACCCACATCTCCTCACTTGTACCCCTTCCACTTGAGCTTCTCTTCCTCTCTGAATAAGTTGTTAACTCATTGTGCATCGCATGAATCCATGCAGCATTTTGGATCAATGTATAATACTGTCAAGCAGGTCATAGGACAAAAAAAGTGCACATAAGCTACAGTATTTCAAACTAGAAAATATAGATGTCACATATGTTTTATTGTCTAGAATATGAAGGAGCTTCTTCCTGTTAAAGTTGTTGATAACAAGTCATCTGCATGGATTTTTCTCTCCTCCGCTAAAGGGTCATTCGAGTTGTTGAAAGATGATCTGTCCACGACGGTGAGAGTCAAACAGACACTCGTGTGCTGCTGCTACAGAATTCATTGTTGTCCTGCCTCCAGTATCTCACCACGTCTGTCGCAATACCTTCTCTAACTTGCAGTTTCCAGTATACACAGACAATGAGGGCAGCTCTGGTACAGATGTTGATGTGATTGATGGTAAGATATGGCAGATATTTTGGTTAATTAGGTGTGTGTGTGTGTGACGAGGGGGAAAAGGACGACAGAAAGAGGGAAGTCTTAAATCTTGTGATTTCTGAAAGCCCCCTCTGCCCCACTGGGCTTCAACAGGAAGCCATGTCATCATAATAACTGAGTTAACAACGAAACAAGCCACAGGAAACATGGCTCAacacacatctcatccactcacacacacacacacacacaAGCGTGAGCGTATACATATTGCATGGATGTTTTTTCAGCTCCATTAGGATTCCTCACAGCCTCCTGTCTTTACTGCAGATCCTGAGCCAGTCCAACGTGGTGCGGCGGTGTCGCGTCATGGCCTGTGGATCTCTGCTTCCTTTGCTCTCTTGTCTCTTGTCCTTTTAGCTGCCTACATATTCAGGTATATTGTCTCTATCTAGAAACATAGAAAAATAGTATTCCCTGCTGTGTAACAAACATGGATACATTTATAACATGAGTTAGATAATTGCCAGTGGATGTCCCGGTTTTCAAATCTCAGCAAATTATTTCAGTCAACTTCTCTTATTTTCCTTTCAGACACAAGGAAAGATTTATGCGTGTCGTCATAAAATGTAAGGATTCTCCGCGGCCTCCGCCTTCCAGCCCAACGCCTCCAGAAGGGCAGGCTCTGGTGGCCTTCGCCCCCCCTCATTACAAAAAAGAACCACAGAGTGAAGTGGAAAAAGGGGAAGAAGAACAGCGGCTGAAGGAGAGGGTAGAAGCCATGAACTTCAACAACACAAGTTATTTCTTTCTCCATAGAACTCATGGGCAGGCGGAAAAGGGAATAAAACTAGCCAGTGTCACAGATGACATGCGGATTGTTCTCCTTTTGCTGTGCGTTCTGTGCGCCGCGCGGGTCCGGGGCGCTTTCGACGGAACCTGCCCCAGAAAAGAGCCTCCACCTGGTGTGCTGGTTGTATCCCAGGGCAGTAAGTTGGTTTTGACCTGCAGTGGCCGTGTGGAGGTGGACGGGGTGAAGGTCAGCATTCACAGAAACAGTGCAAACATTAGAAGAGGGAATTCCTCTAATGCAACCCCAACCACTGAAAACATAATCAGCGAAACTGGAGTCTGGATGAAAATTAAAAAACATCCTGTGAATGAGGGAAAACAGCCCAACTCAACTTTGGCTGGAGAAAGCAGAAGCCTCGGACTTACAGGATATACAGCTTCTACCAGCACTCACACAGCCCGGCCAACCAGTGTGGACAGACAACTAAAGGGTGAAGAGATGGATGGCATGGGCGATTATGAGGAAGAGGAGGAAGCGGAGAAAGGGAGCAGAGTTACAAGGGGCACAAAGTCAAGGCTGCAGTGGAAGTGGATGAGTCGGACAGTGAGGAAAGGAGTCAGAGACCGGGGAGAAACCACATTTGAGAGGAGAGGGGCTGCACTGTCTCTGTCCCCGGTCAGACTGGAGGACTCTGGGAGGTACACCTGTTATCACCGAGGCAGAGAGAGGTCCTCCTTCCTCATACACGTTGCAGATCCTCCAGAGACTCCCAGCCTGTCCTGCTACAAAAGGTCACCCAGCAGTAAGATCCGCTGTGAATGGGCCCCTCAGAGGCCCCTCACGATATGGCCGAACTGTTACCTCCTCCTTAGTAAAAGCCCCACACAGGCGTTCCTTCCATCGCAGTGCTCATACTCACATCGGAGCTCCCGCTGTTGGTGTGCTCTGGACCACAATGAGGACGAGCAGAGAACCCTCCACATGGCCTACCTGTGTGTGACGAGCATCGCAGGAAACGCCACCAGCGCCCTGCTGCACTTCCTACCGCTAAGCATTTTAAAGCCTGACCCTCCATCGGATGTGACGGTTCAACAGGAGGAGGGACAAGAGATGAGGATGACCGTTACCTGGAGTTTGCCGAACTCCTGGAAGTCTCAAGAAAGCTTTTATGTACTAAACTACGAGATCAAATACCGACCTCTCAAGTCCTCGTTATATCATGGCCAGATACAGGCGGTGAAGAAGCGCTCCTACACAATCACTGATGCAATGCCTGGTGTTGAGTACTTGATACAACTCAGAACCAAGGAAGAGTACGATGGTCAGTGGAGTGACTGGAGTACACCTGTCCAAGCCAGCAGCTGGTTGAGGTCAACAAGGTCATTCGAGTTGTTGAAAGATGATCTGTCCACGACGTTTCCAGTATACACAGACAATGAGGGCAGCTCTGGTACAGATGTTGATGTGATTGATGATCCTGAGCCAGTCCAACGTGGTGCGGCGGTGTCGCGTCATGGCCTGTGGATCTCTGCTTCCTTTGCTCTCTTGTCTCTTGTCCTTTTAGCTGCCTACATATTCAGACACAAGGAAAGATTTATGCGTGTCGTCATAAAATGTAAGGATTCTCCGCGGCCTCCGCCTTCCAGCCCAACGCCTCCAGAAGGGCAGGCTCTGGTGGCCTTCGCCCCCCCTCATTACAAAAAAGAACCACAGAGTGAAGTGGAAAAAGGGGAAGAAGAACAGCGGCTGAAGGAGAGGGTAGAAGCCATGAACTTCAACAACACAAGTTATTTCTTTCTCCATAGAACTCATGGGCAGGCGGAAAAGGGAATAAAACTAGCCAGTGTCACAGATGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF09240	IL6Ra-bind	Interleukin-6 receptor alpha chain, binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003530	Conserved_site	Long hematopoietin receptor, soluble alpha chain, conserved site	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015321	Domain	Type I cytokine receptor, cytokine-binding domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23037	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-