Gene detail

Detailed information of HS18803 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS18803	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	chr22	237481	241086	+

Gene Structure

More details in Jbrowse Sequence

CDS

HS18803

atgaccatgtcagatatctcccaggttcccaaggaataccttgatctgaacggggtatttagcaagacccgggccacatcgttgccgccgcatcgtcgatatgactgtgccattgacctgcttccaggtacaacccctcccaggggtagactgttttcactatctgctccggagactaaatcaatggagagatatatcaacgactctctggctgcgggtctcattagaccatcctcgtctcctgcgggatctggttttttttttgtcagtaagaaggacaagaccctgcggccgtgcatagactatagaggactcaatgacattatggtgaagaacaggtaccctcttccccttatctcctctgcatttgagctgctacaaggtgctaccattttttccaagctcgatctccgtaacgcttaccatttggtaagaattcgagagggggatgaatggaagactgcctttaatactcctagtggacattatgagtatttggttatgccgttcggtctcaccaatgcccctgcagtcttccaggggttgatcaatgaggttctctgggacctgctcaatgttagtgtttttgtgtatttggatgacattcttgtcttttcaaagtctccacaggaacatgtggtgcatgttcgtcaagtcctccaaaggcttttgaagaaccacctcttcgtcaaagcagagaaatgtgagttccacaccacaacggtatcattccttggttttgtcatcaatgctggtgatattcggatggactcagccaagacgagagcagtcgctgactggccggtgcctgtcacttggaaggaacttcaacgctttcttggctttgccaacttctaccggcggttcatccatcctgctcggcagtttattgtggaggtggacgcctctgacacgggggtaggagcggtcctgtctcagcggtcggctaaggaccaaaaggttcatccatgtgccttcttctcccggaagctgtcccctgcagagaggaattacgacattgggaaccgggagttgttggcggtcaaactggcattggaggagtggagacactggttggagggagcggagcagccatttgtggtctggacggatcacaagaatctggaatatatccgctcggccaaacgactgaccgctcggcaagctaggtgggccctttttttcaatcgctttatgtttttgctctcctacagaccaggctccaagaacctcaaaccagatgccttgtcccgtcagttccagccggagagctcccctcttcatcctgaagatttcgtaaccggcctacccacctccagtggtaacacagttattctgacagtcatcgatcgattctccaaatctgcccggcttatcccactgacaaaattgcctaccgccaaggaaatggccgagattctgttactggaggtgtttcgtgtccacggtctgcccatagatgtggtctccgaccgtggcccacaattcacctctcgcttttgggccgagttttgcaggctactgggggccacagtcagcttgtcgtctgggttccatccgcaatctaatggacaggcggagcgcatgaaccaggagatggagacagcattacgatgcctctcctcccgcaacccgcaatcctggtccaaggaacttctgtgggtcgagtatgcccacaacacccttcccagctcagccacagggctctcacccttccagtgtgcccatggatatcagcccccactcttcccggagcaggaactcgaggccagtgttccttctgtccaggcgtttatccagcggtgccgacgcacttggaggcaggcccgctccacgctgatgcgcacttccgagcgctacaaacggtctgccaacagacgtcgccgccctgcacctcagtatgctccaggacaatgggtctggctgtctacacgggaccttcccctcagagtggagtccaagaaactggctcctcgtttcgtgggcccgtttccggtgtcgcgggtcattaatcctgcagccatccggctgcgtctaccaccagccatgagagttcaccccaccttccacgtctccagggttaaacctgtcgaggaaagcccgcttaaccccgcccccagacccccaccacccccccggctcctcgacggggatcctatctacacggtccgtcgcctgctcaaatctcggcgacgg

Transcript

HS18803

atgaccatgtcaggtactcacagtgagacactctcctttcatctcatccattcaccacagcagccggtcattttgggctatccatggcttaggagacataatccacatattgactgggctacaggaactatattacaatggagtgctcattgccatgctgtttgcctaagacctgtttcatcattgggccctagtcgggttgatccctctgactctacagatatctcccaggttcccaaggaataccttgatctgaacggggtatttagcaagacccgggccacatcgttgccgccgcatcgtcgatatgactgtgccattgacctgcttccaggtacaacccctcccaggggtagactgttttcactatctgctccggagactaaatcaatggagagatatatcaacgactctctggctgcgggtctcattagaccatcctcgtctcctgcgggatctggttttttttttgtcagtaagaaggacaagaccctgcggccgtgcatagactatagaggactcaatgacattatggtgaagaacaggtaccctcttccccttatctcctctgcatttgagctgctacaaggtgctaccattttttccaagctcgatctccgtaacgcttaccatttggtaagaattcgagagggggatgaatggaagactgcctttaatactcctagtggacattatgagtatttggttatgccgttcggtctcaccaatgcccctgcagtcttccaggggttgatcaatgaggttctctgggacctgctcaatgttagtgtttttgtgtatttggatgacattcttgtcttttcaaagtctccacaggaacatgtggtgcatgttcgtcaagtcctccaaaggcttttgaagaaccacctcttcgtcaaagcagagaaatgtgagttccacaccacaacggtatcattccttggttttgtcatcaatgctggtgatattcggatggactcagccaagacgagagcagtcgctgactggccggtgcctgtcacttggaaggaacttcaacgctttcttggctttgccaacttctaccggcggttcatccgtaactacagttccgtggctaccccccctcacttctctcacatcccccaactcgtgcccttccggtggtcctctgcggctgaagcggctttcagttagttaaagtcccgttttacctctgctcccatcctcatatttccagatcctgctcggcagtttattgtggaggtggacgcctctgacacgggggtaggagcggtcctgtctcagcggtcggctaaggaccaaaaggttcatccatgtgccttcttctcccggaagctgtcccctgcagagaggaattacgacattgggaaccgggagttgttggcggtcaaactggcattggaggagtggagacactggttggagggagcggagcagccatttgtggtctggacggatcacaagaatctggaatatatccgctcggccaaacgactgaccgctcggcaagctaggtgggccctttttttcaatcgctttatgtttttgctctcctacagaccaggctccaagaacctcaaaccagatgccttgtcccgtcagttccagccggagagctcccctcttcatcctgaaggtatcctccctccggagtgtgttgtcggtgcagtaacctgggaggtggaggacagggtaaaacgctccagcgccgaacatcctgctcccagtgcttgtccggttaaccggttgtttgttcctgctcacctccgcccgcaggtgctccagtggggtcactcttctcgccttgcttgccatcccgggatccgacgcacactagcaatgctcaagcaacgcttttggtggccgtccatggaggaggacactaagggatttgttcaattcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcaggggggaaaaaaagggaagaaacctgcaggagagcaacagaggaggatccctctcctaggatggacagatgcaatagatgtaatgtgtacagaaggacagatttagagttaaaatacattcaatgaatatgacagagtgtatgaatagttcatagtaggcatattccacgatggagacctccacgatccatcaggcagatggcggtgggaggaggagggcggagtctcaacaggacagtggcgtagtcatgagcaggaattccacgacccagacgatccatcaggcagatagatctatgccgtctcatagggtccgatgaccccatgagacgtaaagtcaaaaggacttccggggagaaagcagagttagtaacgtgtgattgagagatgaaaattcatccttaaggagagaaaaaagaggagataggtactcagtgcatcctaaaacgtcccccggcagctataagcctatagcagcatatcaaggggctggaccagggcaaacctgattcagccctaactataagctctgtcaaagaggaaggtcttgttggtgcttgccaagtctgcgctcagcacaagacctcccgcaaggctgcctctggtctcctccaccctctaccacttccgcaacgcccatggtcccatattgcattagatttcgtaaccggcctacccacctccagtggtaacacagttattctgacagtcatcgatcgattctccaaatctgcccggcttatcccactgacaaaattgcctaccgccaaggaaatggccgagattctgttactggaggtgtttcgtgtccacggtctgcccatagatgtggtctccgaccgtggcccacaattcacctctcgcttttgggccgagttttgcaggctactgggggccacagtcagcttgtcgtctgggttccatccgcaatctaatggacaggcggagcgcatgaaccaggagatggagacagcattacgatgcctctcctcccgcaacccgcaatcctggtccaaggaacttctgtgggtcgagtatgcccacaacacccttcccagctcagccacagggctctcacccttccagtgtgcccatggatatcagcccccactcttcccggagcaggaactcgaggccagtgttccttctgtccaggcgtttatccagcggtgccgacgcacttggaggcaggcccgctccacgctgatgcgcacttccgagcgctacaaacggtctgccaacagacgtcgccgccctgcacctcagtatgctccaggacaatgggtctggctgtctacacgggaccttcccctcagagtggagtccaagaaactggctcctcgtttcgtgggcccgtttccggtgtcgcgggtcattaatcctgcagccatccggctgcgtctaccaccagccatgagagttcaccccaccttccacgtctccagggttaaacctgtcgaggaaagcccgcttaaccccgcccccagacccccaccacccccccggctcctcgacggggatcctatctacacggtccgtcgcctgctcaaatctcggcgacggatgaccatgtcagatatctcccaggttcccaaggaataccttgatctgaacggggtatttagcaagacccgggccacatcgttgccgccgcatcgtcgatatgactgtgccattgacctgcttccaggtacaacccctcccaggggtagactgttttcactatctgctccggagactaaatcaatggagagatatatcaacgactctctggctgcgggtctcattagaccatcctcgtctcctgcgggatctggttttttttttgtcagtaagaaggacaagaccctgcggccgtgcatagactatagaggactcaatgacattatggtgaagaacaggtaccctcttccccttatctcctctgcatttgagctgctacaaggtgctaccattttttccaagctcgatctccgtaacgcttaccatttggtaagaattcgagagggggatgaatggaagactgcctttaatactcctagtggacattatgagtatttggttatgccgttcggtctcaccaatgcccctgcagtcttccaggggttgatcaatgaggttctctgggacctgctcaatgttagtgtttttgtgtatttggatgacattcttgtcttttcaaagtctccacaggaacatgtggtgcatgttcgtcaagtcctccaaaggcttttgaagaaccacctcttcgtcaaagcagagaaatgtgagttccacaccacaacggtatcattccttggttttgtcatcaatgctggtgatattcggatggactcagccaagacgagagcagtcgctgactggccggtgcctgtcacttggaaggaacttcaacgctttcttggctttgccaacttctaccggcggttcatccatcctgctcggcagtttattgtggaggtggacgcctctgacacgggggtaggagcggtcctgtctcagcggtcggctaaggaccaaaaggttcatccatgtgccttcttctcccggaagctgtcccctgcagagaggaattacgacattgggaaccgggagttgttggcggtcaaactggcattggaggagtggagacactggttggagggagcggagcagccatttgtggtctggacggatcacaagaatctggaatatatccgctcggccaaacgactgaccgctcggcaagctaggtgggccctttttttcaatcgctttatgtttttgctctcctacagaccaggctccaagaacctcaaaccagatgccttgtcccgtcagttccagccggagagctcccctcttcatcctgaagatttcgtaaccggcctacccacctccagtggtaacacagttattctgacagtcatcgatcgattctccaaatctgcccggcttatcccactgacaaaattgcctaccgccaaggaaatggccgagattctgttactggaggtgtttcgtgtccacggtctgcccatagatgtggtctccgaccgtggcccacaattcacctctcgcttttgggccgagttttgcaggctactgggggccacagtcagcttgtcgtctgggttccatccgcaatctaatggacaggcggagcgcatgaaccaggagatggagacagcattacgatgcctctcctcccgcaacccgcaatcctggtccaaggaacttctgtgggtcgagtatgcccacaacacccttcccagctcagccacagggctctcacccttccagtgtgcccatggatatcagcccccactcttcccggagcaggaactcgaggccagtgttccttctgtccaggcgtttatccagcggtgccgacgcacttggaggcaggcccgctccacgctgatgcgcacttccgagcgctacaaacggtctgccaacagacgtcgccgccctgcacctcagtatgctccaggacaatgggtctggctgtctacacgggaccttcccctcagagtggagtccaagaaactggctcctcgtttcgtgggcccgtttccggtgtcgcgggtcattaatcctgcagccatccggctgcgtctaccaccagccatgagagttcaccccaccttccacgtctccagggttaaacctgtcgaggaaagcccgcttaaccccgcccccagacccccaccacccccccggctcctcgacggggatcctatctacacggtccgtcgcctgctcaaatctcggcgacgg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-