Gene detail

Detailed information of HS18673 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS18673	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	chr21	15222042	15224775	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS18673

ATGGCATTAAAACAAGTCATTTTATCATTTTTATTTCCTCAAAGGGATGGAAAGCCCGTTTCCCCCGGGCAGAAGAGTGTCTCTTTTCTTAATAACAACGTTAGCCCCAAAGTTGCTTTTGATTTTAAAGGTGTGACCTGTTAAATAAATATGATAAAATGCTGATTGTGTCTATTATTTTGCATATAATTTGTTTTCTGTTTCAGGGTTTCTTAAAGAAGAAGATCCgAGCGATACAGAGAGTCTAGCAGCAATTTGTCCTTCAGGGGTAAGTTTAGAAATACATTTGTATTTCTTCTTGTGACTATAACGTCACTGCCAGACAGTCGTCGACTCAAGTTTTGATCACAGATTAAAGTATGAATCCACTTTTCTTTTTATTGCACGTGCAGGAGGAGATCATACATCTGGACCTGGAGAAGCTGCAGGCCGGAGGTCTGGGGTTCTCTGTGATTGGAGGAGAGAGGGGGATCTTTGTGAAGTCCATCACCCCGGGAGGACTAGCAGAGACCTCCAGGGAACTGCAAGTGGGAGACCGGCTGCTGAAAGTGAGTTATATTTCACCTCTGCTGCTCAGAAGTCAAGTGCGTATTGATATATGTACTACTATTTAAGTTAATATTTAaATCATTTACTGTGACCTCTGCCCATCCCTATGAACTGTCCACAAACAAAATAACACAAATGCAAAGCGTTCAATCTGCTGAGCATTTATCCTGCATGCTTTGTCTTTCTTCCTCACGTGTGTCAAACGTTGTGATGTCTCTTGCAGGTGAAaGAGGAACTCATGACCGGCGTGTCCCACACCAAAGCCGTCACCACCATCCGTAAAGCTAAAGGCCCGGTGCATCTCATCGTGTCCAGACCGCCCGACCAGAACCCAAACACCTACATGGCCTATCTGCCCATCAACTCGGACAAGTGCAATGGAAACACAGGCAAGAGACGCAGAACaTGGAATCTGTTTGTcTCATTTGCGAAGACGTCATTATACTGTAACAAAATGTGACCAGTGCCATCATTATTATTAATATTCTGCACACACCCCACGCTCCTTCTTGCTGCTTTCAGATGTGAGTGAGGACAGTGGAGCAAAGACTCTGTTTCCTCTCCGtAATGAGCTGAAACCCGGCAGCTGCCCTGTTCTACCACCAATAGGTACGTGCAGGCTAGAAGTCTCTGTAGAACCATGAGTGTTGTTTaATTTGACTTGTGTATATCTCATAATACGATTGTTgCCTTCACAAACTCGGCGCCCCGCTCTTGTGTACAGACTATGAAGAGGATCCACTCGGACACAAGAGAGAGACGCAGCAcAGCGCAGAGCTTTCCGAGGACACCGACTGCGACGGCTCTTCTTTACCCGAAGACTCCCCTGAGGTTCAATTCTAATCTTTCCATCTTGATGAAACTCTGACGCTAAATGCAGCAGACGATTgaTTTTTTTTaTTTTTATTCTTTCAAAATAGAGTTCCAGGGAAGTGGAAGTGGAAGACGATCCGAGGAATGAAAAGTAGGATTCTGATTCTCGGGTTCACTCGTAGCTCTTTGAATATATTAATAAGCTTCTCACTGGTTCTGTTTTTTAATCGACAGCTATCTGCAAATGAGTGTTGGACAGCAGGAGGAAGATGAGATCACGTGGGGGAGTGATGAGCTGCCAATTGAAAACATGAACTCTGAATCGAGAGACGGTAAGAGCGGCTTTGGATTTTAATTTTGATTTAATGTGAGAAGGGAATACATAATCTGGGTTGGCAAAAGAGATCTAGATTCCAACATTTAATGCATTTCGTGCAGTGAGAATGGAGTCTAAAATAAAGAGGAAGTCATGGGTCAAACATTCGCCTAATATGTTTTCACATTTAAGATTTGTCTTTATTGACAAAACATCTTTTGGGGCAATTTTTTTCTCGTAAATCTGCTTTcACTGTTTCTACCCCCCCCCCAATTCCAGACGAGCCAATCATCACCGAGGATGAGCTGACCTCTTTGCCCCTCATCAAGGTGGTCCCCGATGGCCAGTACACGGGCCCGCAtCTCAACACTGTGGTCCGCATGATGAGGGGCCTTCTGGAGCAGAAGGTCCCGCTGCAGGAGTTCGATGTAAGAATCTACCAAGAATTGCGATGCCTGTGAATTAATTGCAATTAATTCGATGAATTGATCATCCGTGAATATAATTtTTCtTTTTTTTTCCACCCCGGCAGAATCTTCAGAACCTCCAGCCGCTGGACGACTGTTTGATCGGTCATACGAAGGAGAACAAGAAGAAGAACCGCTACAAGAACATCGTTCCCTGTAAGAAAGTGTTTCCTCACGGGAAGCAGGAAGGCTTTTTTATAAGTTTAGATATTTAAAATGTTGCACATCAATTGAGAAATCTATTTTTTTCCCTGTCCAAATCTCTTCCAGTCGACACGACTCGAGTTGTGCTGGGCCGAGACGGCGGCTACATCAACGCCAACTTCATCAACATGTCCGTGAAGGAGGAGAACTACATGTACATcGCATGTCAGGGGCCCTTACCCACGACTCTGGGGGACTTTTGGCAAATGGTCTGGGAGCAGAAGTCCAACGTCATCGCCATGATGACCCAGGAAGTCgAGGGCGGGAAGGTGAAATGTCAGCGGTACTGGCCGGACACGCCGAGGACGGCGGAGATGGTGGACGACCGGTTGCAGATCACGCTGATCAAAGACCAATACCTCGACAACTTCGTCATCCGACTCATATGGCATTAAAACAAGTCATTTTATCATTTTTATTTCCTCAAAGGGATGGAAAGCCCGTTTCCCCCGGGCAGAAGAGTGTCTCTTTTCTTAATAACAACGTTAGCCCCAAAGTTGCTTTTGATTTTAAAGGGTTTCTTAAAGAAGAAGATCCgAGCGATACAGAGAGTCTAGCAGCAATTTGTCCTTCAGGGGAGGAGATCATACATCTGGACCTGGAGAAGCTGCAGGCCGGAGGTCTGGGGTTCTCTGTGATTGGAGGAGAGAGGGGGATCTTTGTGAAGTCCATCACCCCGGGAGGACTAGCAGAGACCTCCAGGGAACTGCAAGTGGGAGACCGGCTGCTGAAAGTGAAaGAGGAACTCATGACCGGCGTGTCCCACACCAAAGCCGTCACCACCATCCGTAAAGCTAAAGGCCCGGTGCATCTCATCGTGTCCAGACCGCCCGACCAGAACCCAAACACCTACATGGCCTATCTGCCCATCAACTCGGACAAGTGCAATGGAAACACAGATGTGAGTGAGGACAGTGGAGCAAAGACTCTGTTTCCTCTCCGtAATGAGCTGAAACCCGGCAGCTGCCCTGTTCTACCACCAATAGACTATGAAGAGGATCCACTCGGACACAAGAGAGAGACGCAGCAcAGCGCAGAGCTTTCCGAGGACACCGACTGCGACGGCTCTTCTTTACCCGAAGACTCCCCTGAGAGTTCCAGGGAAGTGGAAGTGGAAGACGATCCGAGGAATGAAAACTATCTGCAAATGAGTGTTGGACAGCAGGAGGAAGATGAGATCACGTGGGGGAGTGATGAGCTGCCAATTGAAAACATGAACTCTGAATCGAGAGACGACGAGCCAATCATCACCGAGGATGAGCTGACCTCTTTGCCCCTCATCAAGGTGGTCCCCGATGGCCAGTACACGGGCCCGCAtCTCAACACTGTGGTCCGCATGATGAGGGGCCTTCTGGAGCAGAAGGTCCCGCTGCAGGAGTTCGATAATCTTCAGAACCTCCAGCCGCTGGACGACTGTTTGATCGGTCATACGAAGGAGAACAAGAAGAAGAACCGCTACAAGAACATCGTTCCCTTCGACACGACTCGAGTTGTGCTGGGCCGAGACGGCGGCTACATCAACGCCAACTTCATCAACATGTCCGTGAAGGAGGAGAACTACATGTACATcGCATCCCACGACTCTGGGGGACTTTTGGCAAATGGTCTGGGAGCAGAAGTCCAACGTCATCGCCATGATGACCCAGGAAGTCgAGGGCGGGAAGGTGAAATGTCAGCGGTACTGGCCGGACACGCCGAGGACGGCGGAGATGGTGGACGACCGGTTGCAGATCACGCTGATCAAAGACCAATACCTCGACAACTTCGTCATCCGACTCAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00102	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR029021	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR052074	Family	Non-receptor Tyrosine-protein Phosphatases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46900	TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan
GO:0035335	Biological Process	peptidyl-tyrosine dephosphorylation	Interproscan
GO:0036312	Molecular Function	phosphatidylinositol 3-kinase regulatory subunit binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-