Gene detail

Detailed information of HS18215 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS18215	BICOID-INTERACTING PROTEIN RELATED	chr21	2223436	2227976	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS18215

CACCATggaggaggcggaggaggaggaggcggaggaggaggaagagggaggGCCGTGATACCTGCTCGACTGTTTCCCTCCACAGCTACACTGACAGGTGAGACTGGAACACCTGGTGGACGCAGGTCATAATAATATaataatgtatttattgaccctgtgggtaaattcttctcattgaccatcctcagttattaaggaacaAGGaaataataatgcaaaaaaataaataataatgcttgaaaataaataatactgctaataataataatgcaaaaaaatatataatgataataataataatgataataataacaatgataagaaGAGAACTGTCTTTAGTGACATAATAGTAAAGAAGAAGTGAAGAAGTTGAAATAGTGTTTTACCAATTCTTTAAACCTATAATCGAGGCTCTACAAATGTATGAATATTAAGCTCCTCCCCCTCTCTCGTGTGCAGTCCCTCTGTTGACCAGAGGGGTCAGCGTTCCAGCGTCTCCTCTGCCCTGTGAACTCAACACGGCTATTACATGTCGGGACGACGTAGCTCCGCCCCCCATCCTTCCCAGGAGACACACCCACCCTATACCGGGACACGCCCACAAGCCCGGTAACCAGGGAGACGGCCGCAGATGCAGACGGCGCCGCACCGCCTCGGCGAGGTCGGCTGACAACACCGATACCATGGCAACCAAAGCTCAGCCAACCAGATTCCAGACACCGCTGGTGGGAGGGGCTAAAGCCGGCAGGTTAATGTCACACCTGAAGTGTCAAACTCTGAGATATAAGAAGAGAtgacaggaagtgagattagatgaactgacaggaagtgagattagatgaattgacaggaagtgagattagatgaactgacaggaagtgagattagatgaatttacaggaagtgaggtcagatgaactgacaggaagtgaggtcagatgaactgacaggaagtgaggtcagatgagctgacgaagtaaggtcagatgaactgacaggaagtgaggagagatgaactgacaggaagtgaggtcagatgagctgacaagaagtTACACCTGAAGTGGATTAGAATCCTCTAATCTGATTGGCTGCCCCCGACAGGTGTGCAGGCCCTCAGCCCGGCTCTGCTAATCCACCAGAGAAGAAGAAGGACAAGCGCCGTTACCAGTACGGCAACCACAGCTGTTACTACGGCTACCACGGTTTCTACGGCGACAGGGGGGAGGGGCGTGTCGGGGCAGTAGAGGACCCGCGGCTCCGCCTCCTAGAAGCCGATTGGTTCAGAGACAAGAAGGTGCTGGACGTGGGCTGCGGCACCGGTCACCTGACGCTCGCTATCGCCCGGAGGTTCAACCCCGCCCACATCCTGGGGGTGGAGCTAGACCGCCGATTGGTCCACACTGCCATGCAGAACGTCAGGCACTTCCTGTCACATGACCTGGTAGTggaggagaggaggaggaagaaggaggagggaggggaggagaagctccgccccctgcccctgtccttcagggtgagtcgaggtcctctctctgctcctcctctcctcccaccttcatcctcctcctcCAGGTTCCCCAGCAACGTCACCTTCATCCAGGTGAGTGTCCTCACATGAGCCTCTGACATCATCACCTGCTGGCGCCAACGCTCTGGCTCCTCCCACAGGGCGACTACGTGTCGGGGCGGGAGCGCTGGGCTGGGCGGGGCCAGTATGACGTCATCTTGTGTCTGGGCGTCACCAAGTGGGTGCATCTGCAGTCAGGAGACGGGGGCGTGGCCACTCTGTTCAGACGGGCCTATCAGAGCCTGTCGTCGGGCGGATTGTTCATGCTAGAGCCACAACCATGGAGCAGCTACAACCACAACCAGAGGCCCTCGGTAACAcgtgtgtgtatacctgtgtgtgtgtatacctgtgtgtgtgtatacctgtgtgtgtgtatacgtgtgtgtgtgtatacgtgtgtatgtttatacctgtgtgtatgtttatacctgtatgtgtatatacctgtgtgtatgtgtatatacctgtgtgtatacctgtgtgtgtagacattcaattaaattaaattcagtttatttgtagagcccaatttcacaaattacaaattagtctcggagtgcttcacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcagggggaaaaaaagggaagaaacctggaagagagaacagaggaggatccctctccaggatggacagatgcaatagatgtcatgtgaccagaaggacagatttagagttaaaatacattcaatgaatatgacagagtggatgaatagttcatagtcggcatattccacgatggagacctccacgatccatcaggcagatggcggtggggaggaggagtgggcggagtctcaacaggacagtggcgtagtcatgagcaggaattccacgacccagacctcgacgatccatcaggcagataggatctatgccgtctcatagggtccgatgaccccatgagacgtaaagtcacaaggactccggggagaaagcagagttagtaacgtgtgattgagagatgaacattcatccttaaggagagaaaagaggagataggtactcagtgcatcctaaacgtcccccggcagctataagcctatagcagcatatcaaggggctggaccaggtgaacctgattcagccctaactataagctctgtcaaagaggaaggtcttcagtctactcttaaacgaggtgactgtgtctgcctcccggactgaaggtgaagctggttccatagaagaggagcttgataactgaaggctctggctcccattctactttttaagactctaggaactacaagtagtcccacatttagtgagcgtatacctgtgtgtgtgtatacttgtgtgtgtgtatatatctgtgtgtgtatacttgcgtgtgtgtatacctgtgtgtgtgtctacctgtgtgtgtatatacctgtgtgtatgtgtgtgtacctgtgtgtgtgtacctgtgtgcatatacctgtgtgcgtacctgtatatgtgtataactgtgtgtttgtgtatattcaattcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcagggggaaaaaaagggaagaaaccttcaggagagcaacagaggaggatccctctccaggatggacaggacaatagatgtcatgtgaccagaaggacagatttagagttaaaatacattcaatgaatatgacagagtgtatgaatagttcatagtaggcttattccacgatggagacctccacgatccatcaggcagatggcggtggggaggaggagtgggcggagtctcaacagtgggcggagtctcaacaggacagtggcgtagtcatgagcaggaactccacgacccagacctcaatgatccatcagcagataggatctatgccgtctcatagggtccgatgaccccatgagacgtgaagtcacaaggatacacgtgtgtatacctgtgtgtgtgtgtgtgtacctgtgtgtgtgtatacctgtgtgcgtacctgtgtatatgtgtataactgtgtgtttgtgtatatacacgtgtgtatacctgtgtgtgtgtacctgtgtgtgtgtatacctgtgtgcgtacctgtgtatatgtgtataactgtgtgtttgtatatatacacgtgtgtatacctgtgtgtgtgtacctgtgtgtgtgtatacctgtgtgcgtacctgtgtatatgtgtataactgtgtgtttgtgtatatacatgtgtgtatacctgtgtgtgtgtttgtgtgtgtatacctacgtgtgtatacatgtgtatgtacctgtgtgtatacctgtgtgtgtgtatacctgtgtgcgtacctgtgtatatgtgtataactgtgtgtttgtgtatatacacgtgtgtatacctgtgtgtgtgtacctgtgtgtgtgtatacctgtgtgcgtacctgtgtatatgtgtataactgtgtgtttgtgtatatacacgtgtgtatacctgtgtgtgtttgtctgtgtatacctacgtgtgtatacatgtgtgtgtacctgtgtgtatacctgtgtgtgtgtatacctgtgtgtgtgtctctaacacagttgTCTCCTTCAGGAAGTGACTGATCGTAACTTCAGGACTTTGAGACTGAGACCTGAACAGTTCACCTGCTACCTGACGGACAGCGTGGGcttcagctcctatcgactcatcacacacacaggtacacacacacaggtacacacacacaggtacacacacacacacacacagataaatacacacacaggtgtcccctctaacatgtgATCTGATTGGTGCATTCTTCCAGCTAATCAGCGGCCCATCTACCTGTTCCACAAAGGCCCCGCCCAGAGGAAGCACCATggaggaggcggaggaggaggaggcggaggaggaggaagagggaggGCCGTGATACCTGCTCGACTGTTTCCCTCCACAGCTACACTGACAGTCCCTCTGTTGACCAGAGGGGTCAGCGTTCCAGCGTCTCCTCTGCCCTGTGAACTCAACACGGCTATTACATGTCGGGACGACGTAGCTCCGCCCCCCATCCTTCCCAGGAGACACACCCACCCTATACCGGGACACGCCCACAAGCCCGGTAACCAGGGAGACGGCCGCAGATGCAGACGGCGCCGCACCGCCTCGGCGAGGTCGGCTGACAACACCGATACCATGGCAACCAAAGCTCAGCCAACCAGATTCCAGACACCGCTGGTGGGAGGGGCTAAAGCCGGCAGGTGTGCAGGCCCTCAGCCCGGCTCTGCTAATCCACCAGAGAAGAAGAAGGACAAGCGCCGTTACCAGTACGGCAACCACAGCTGTTACTACGGCTACCACGGTTTCTACGGCGACAGGGGGGAGGGGCGTGTCGGGGCAGTAGAGGACCCGCGGCTCCGCCTCCTAGAAGCCGATTGGTTCAGAGACAAGAAGGTGCTGGACGTGGGCTGCGGCACCGGTCACCTGACGCTCGCTATCGCCCGGAGGTTCAACCCCGCCCACATCCTGGGGGTGGAGCTAGACCGCCGATTGGTCCACACTGCCATGCAGAACGTCAGGCACTTCCTGTCACATGACCTGGTAGTggaggagaggaggaggaagaaggaggagggaggggaggagaagctccgccccctgcccctgtccttcagggtgagtcgaggtcctctctctgctcctcctctcctcccaccttcatcctcctcctcCAGGTTCCCCAGCAACGTCACCTTCATCCAGGGCGACTACGTGTCGGGGCGGGAGCGCTGGGCTGGGCGGGGCCAGTATGACGTCATCTTGTGTCTGGGCGTCACCAAGTGGGTGCATCTGCAGTCAGGAGACGGGGGCGTGGCCACTCTGTTCAGACGGGCCTATCAGAGCCTGTCGTCGGGCGGATTGTTCATGCTAGAGCCACAACCATGGAGCAGCTACAACCACAACCAGAGGCCCTCGGAAGTGACTGATCGTAACTTCAGGACTTTGAGACTGAGACCTGAACAGTTCACCTGCTACCTGACGGACAGCGTGGGcttcagctcctatcgactcatcacacacacagCTAATCAGCGGCCCATCTACCTGTTCCACAAAGGCCCCGCCCAGAGGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06859	Bin3	Bicoid-interacting protein 3 (Bin3)	Family	Interproscan
PF13847	Methyltransf_31	Methyltransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010675	Domain	RNA methyltransferase bin3, C-terminal	Interproscan
IPR020596	Conserved_site	Ribosomal RNA adenine methylase transferase, conserved site	Interproscan
IPR024160	Domain	Bin3-type S-adenosyl-L-methionine binding domain	Interproscan
IPR025714	Domain	Methyltransferase domain	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR039772	Family	RNA methyltransferase Bin3-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12315	BICOID-INTERACTING PROTEIN RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000154	Biological Process	rRNA modification	Interproscan
GO:0000179	Molecular Function	rRNA (adenine-N6,N6-)-dimethyltransferase activity	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0008171	Molecular Function	O-methyltransferase activity	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0017069	Molecular Function	snRNA binding	Interproscan
GO:0040031	Biological Process	snRNA modification	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-