Gene detail

Detailed information of HS18000 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS18000	HEMOPEXIN DOMAIN-CONTAINING PROTEIN	chr20	26006099	26011500	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS18000

ATGAGGGCCGCACCGCTGCTGCTGGCTCTGCTGGCGACGACCTTTGCTGCAGACGGTAAGAACAACATTAAAACATtACTTTTAAAGTCTGtTACTAACTAaTATTAATATAAGTTgTttttttttactttggtttatttgatacgggacagttcacattaataaaaatatttctgtaaatatgccaagaggctatttttcatctgttgtcccgagaggcagacagtcataaaacaaacctaaaaacataagattacatatacaatgtttttaaacaataattaCTCTTTTCAATGTGTGCACCaacatttaatagtgagaatagtgaatatcctcattcttagacaaactcacaaggcatgcaacacaaaggctATTATTAATTCATTAtTTTTGGTTATTTTAACAATTTTCTAAATTGTTTATAAtATGGTAGAAAAaTAGTGAAAAATAGGAATGTCTTCAAAAGGTTTGTTGTTGTCCAAaAAAaTCTACATTTATTCAAAaTTAAAACTATAAAATTGTcGAAAAAAAGGAGCAACTTTCACATTTATTGCTTTAAAAAAAAATTTTGACTTAAAAAAAAATCGAAAAATCTATTAATTACAATTATGAATACAAACCGGGTAGGTATGGCATTTTAATCTGgGTGTTACATGCTTcCATCAAGTAaacaacaacaacaacaaaacaCGTAGTGTGCCCTATCTACACAAGAAGACAATTGTTTCCGTTAGGACTGCTACCAAAAcTATATTAATAATAAGAATCGGATTAGTTTAACAATTTTTtAaTTaATTTAAAATTTGAAGTATATAAATGGTTGCAAATTGTGAAATATAGGGAAATCTTCAAAAGTTTTGTTGTTGCCTAAAAAAATCtAAaTgTATTCAAACTTAAAACTATAAAATTGTAGAaAAAAGGAGCAACTATCACATTTAATGCCTTTTTTTaAAATGAATGACGTaAAAaAAAATTGAATAATCTTTTAATTACAATTCTGAATACAAACATCAAGTAATTAACAAAAAAGCAAAAcAaTTTGGGTGCCCTATCTACACAAGTAGACTATTGTTTCCGCTATGGACTGCTACAAAAAGATATATTAATGATAAGAATCTGATTATTttaacacttaaaatattttaaattgaacttaaaactataaaaTTCTAGAAAAAAAGGAGCAACTATTACTTTcATTGCCTTTTTTTTaAaTTAATGACTTCAATTATCTTTAAATTACAAATGTGATtACAAACCGGCATTTAACATACAAAGACGGTTacaattAAtAAAATAGTAATAATGATAAAGAACAACATATCCCAtGAGCCTTCGCCATGGACATGATATCAAAAGtCTTAAcGTAACTTTATTCTTCAAAGGAGTAAATTCATATCCCCCTcTCCTCCtCAGAGTCCTGTGTGGGCCGCTGTGAGACCGGCTTCAGCTCCCTGAAGAAGTGCCAGTGTGACTCCATGTGCAAATATTACCGGAGCTGCTGCTTTGACTTTGAGGTCACCTGCGGCGTGACGAGTAAGAAACCTCCCCGCTCGCGATAACTCaaAAAAAAAATGAAAACGACGCTCTGAAAGACGaCGTCGCCGACGTCGCTTCTTCTTGTCGCTCTCCTCCAGCTCGCGGGGACACGTTTGCcgaggacgacgacggcgacgaaggcggcgaGGTGTTCGAAGGTACCGCTCCGCCGCCTCGGCCCACGCCGCAGCCCGTCCCAGACTTTGGGCCTCGCCGTCCAGAACCAGCGCCAGAGATGACCGAGCCCCCCCGACGGATAGAAACCATATGGAACACCCCCGTGACGCAGAAGACCCCCGTCGCCCAGACGGCGGCCCCACCTGCaGAGACGATTCCCATCCCAACAAGGGACGCTGCAGCTGAGACCACCGCGGTTCCCATGACGACAGCTGCCGCCGTCACCACCGGAGGCCCGAAGGACCCGGACGCCGAtGCCTGCAGCGGGAGGCCTTTTCACTCCTTCATGCAACAGAAGAATGGCTCCATTTTTGCTTTCAGGGGTGAGTGACGTCATCATTTGATCAAAGAGGTGTACGATCTTTGTGAATGGGGTTTATTTTTTTATCTTTTAGGGGACTACTTTTTTCAACTGGGCCAGAAGTCAGTGGTTCCGGGTTATCCAAAGCTCATAAAGGACGTGTGGGGCATCGACGGGCCGATCGACGCCGCCTTCACCCGCGTCAACTGTCAGGGGAAGACCTACATCTTCAAGGTGGGAGTAAGAACATACTGTATACacacgactgttcacaagtttggagtcacccagacaatttggtgttttccatgaaaactcacacttttatttatcaaattattgcaaaattaatttaaaatatagtcaagacattaaggttagaaataatgatttttattgtaaatataaatgttcttcaaacttgtcgctcaaaggaaggtcagttttatagcttctctcaccagcataactgttttcagctgcgctcgcataaaaagggttatcaagggttttatacccctctgttagtcttctaaggcgataacataatgtaccattagaacactggagatgggcctcttcacacctctggagagacttcattaaacaccagagaatagtcatctacacattaactatgtacagagagtatttatgattcatttaatgttatctacatttttaaatgttatccttcacttttctttgaaaaataaggatatttctaagtgaccccaaacctttcaacgggagtgtatatatattataATAATGTATTGTCTGAACAAATCTTCAATAGGGAGACAAGTACTGGAGGTTTGAGAACGGCGTTCTGGATGAAGACTATCCTCGAGACATCAGCGTGGGCTTCGACAAAATTCCCGATCACGTGGACGCGGCGTTCGCTCTTCCGGCTCCCGGGCACGACGGAAGAGAGAAGGTCTACTTCTTCAAAGGTAGACAAACATTTGAATATGAGAATATTTTTATGTGACAAtgtggaagatatttatcctacacacagaaccatgaaggtgcatctggaaccgaaaatggttcttcagagtgatgccaaagaagaaccatttcttgttccacaaagaacattccaaacctgggttctctaaagaaccatttccttaaagagttcttcaaagaacctataaaggtgtctcagagaaccttcaaaacatggttctttaaggcaccatatctggttccacaaagaacctttcaaaccagggttctttaaagaaccatttccttaaagagttcttcaaagaacctatgaaggtgtctcaaacaaaaaggttcttcagtagttgattgttcttcgcagaaccaccttctaaagaaccattGAAGAACCCGTATGTTTCTGCGCGTGCATGCAGAACATGACCTCTTGTGGTTCTCCACAGGCGGTCAGTATCACACGTACGAGTTCTTGCAtCAGCCGTCTCACGCGGAGTGCGTCGGCATGTCGGAGAGTTCTCCGTCCGCGCTGTTCCGGCGCTACACCGAGCTCTACTACAACAACTACGAGCGCGGCGTCCTGGAGCTGTTCTCTGGCTGTGAGTGTGTGCGGTGCATTGTGGGTAATGCAGTGTATCTGTTTGAGGGCGTGTGCACAGCTTCGTGTGTTTTGTGTTTTCCCGTCAGCGCCTCAGCATCACGACAAACACCGCTTCATCGACCGGGACTGGACGGGCCTGAGGGCTCCGGTGGACGCCGCCATGGCCGGCAGGATGTACGTGCCTCCGGCGAGGCCCGCCAGACGCCACGACGATACCGGGCCCGACCAGCAGGGGGGGCAACAGCGAGGccagcagtggaaccagcagtggaaccagcagtggaaccatcaggggaacccccagtaccagcagtacggacagcagtgggaccagcagtgggCTCGGAGGAGGCAACGCCGCTCGCCCGCCGGCTGGGGGGCCGCGGCTGAGCGGGGGACGAACGTGGGGCAGGAATATgcggagagggggatggagatgggtctgaggttggcggagaggaggatggagatgggtctgaggttggccgagaggaggatggagatgCAAGAGAGGCTCGGGCGGGACTGGGAACGACGGTGGAATCAAGACTGGGACCAGCACAGACGTCAAGATGGCCACCGTCAGAACCACGGGGGCCACTACGACTCCAGAGGCGACCGGGGGTCCGTCCAGGGGGTTCTGCCCATCCAGAGCATCTATTTCTTCAAAGGAGGTAATGCAGGTTCATCCGTGGTCCATTCAGGTTGATAATAATCAGAAAAAACAGAATATCTATTGTTTTATCTAAGTTGAAGGGTCAGGGGTCAGGGGTCAGGGTACCCGTTTGACCCCAGGAACATGTTTCAGTTTTCTCTTCAGGCCGATGAAAGACGACCTTTGTGGAATCAGATGTTGAGGGCAGACAGGAACTCATTTAAACTCATTCCACCTCGAATTTATAGCCACAGaaaacttattataactagaatgggcactcggtagagcgcataccttcgcatatcacaagattgggcattgaattatgaacattttggcattagtttcatgacaattggatagaaattgaccgcgctatggtaaaaagaagatgttgacctttccatgaccttgacctttgacctgattgatcccaaaatctaatcaactggtccccggataataaccaatcatcccaccaaatttcatgagattcggttaaaaactttttttgtgatgagaataacacgcatacaaataaataaataaataaataactacacggcgatcaaaacataaccttccgcattttcaatgcgaaggtaactaGTTAACATGAGTACCAGACCACATGACACAGAATCAGATGCCTGATCACTGCAGTTCTGGTGTTTTTATGCCTGTTTTAGTGCAATTTTGGGTTTAAACATTCTCTTTTCTTCATATATatattcattttaattgcacaagttaacaagaccggactttaaggatacaatacaaagggaagggagaaagaaaagggtaaagaacaacacaaacatataaaaaaaAcagtctgacgtcagtaaatctttatgtttttatcgtcaaatcaagtcagcatcggtgtttttaatctggcagagcaaagtccagcccagaggggtccTTGCGATTGTGTTTTGATGCCTGTTGAGAGTTTCTTCACACAACGTAACGACGAGCTGCTCCAGATATACAACCTTATTGTTGTTTCTGTGTGTTTTCCAGCGACGTACTACCGAGTCGACCTCAAGACCAAGAAGGTGGACCTCGCCACGCCTCCGTATCCCAGGTCCATCGCCAAGTACTGGTTCGGATGTTCAGACGCCACCGGGGCAGAAAAGATGAGGGCCGCACCGCTGCTGCTGGCTCTGCTGGCGACGACCTTTGCTGCAGACGAGTCCTGTGTGGGCCGCTGTGAGACCGGCTTCAGCTCCCTGAAGAAGTGCCAGTGTGACTCCATGTGCAAATATTACCGGAGCTGCTGCTTTGACTTTGAGGTCACCTGCGGCGTGACGACTCGCGGGGACACGTTTGCcgaggacgacgacggcgacgaaggcggcgaGGTGTTCGAAGGTACCGCTCCGCCGCCTCGGCCCACGCCGCAGCCCGTCCCAGACTTTGGGCCTCGCCGTCCAGAACCAGCGCCAGAGATGACCGAGCCCCCCCGACGGATAGAAACCATATGGAACACCCCCGTGACGCAGAAGACCCCCGTCGCCCAGACGGCGGCCCCACCTGCaGAGACGATTCCCATCCCAACAAGGGACGCTGCAGCTGAGACCACCGCGGTTCCCATGACGACAGCTGCCGCCGTCACCACCGGAGGCCCGAAGGACCCGGACGCCGAtGCCTGCAGCGGGAGGCCTTTTCACTCCTTCATGCAACAGAAGAATGGCTCCATTTTTGCTTTCAGGGGGGACTACTTTTTTCAACTGGGCCAGAAGTCAGTGGTTCCGGGTTATCCAAAGCTCATAAAGGACGTGTGGGGCATCGACGGGCCGATCGACGCCGCCTTCACCCGCGTCAACTGTCAGGGGAAGACCTACATCTTCAAGGGAGACAAGTACTGGAGGTTTGAGAACGGCGTTCTGGATGAAGACTATCCTCGAGACATCAGCGTGGGCTTCGACAAAATTCCCGATCACGTGGACGCGGCGTTCGCTCTTCCGGCTCCCGGGCACGACGGAAGAGAGAAGGTCTACTTCTTCAAAGGCGGTCAGTATCACACGTACGAGTTCTTGCAtCAGCCGTCTCACGCGGAGTGCGTCGGCATGTCGGAGAGTTCTCCGTCCGCGCTGTTCCGGCGCTACACCGAGCTCTACTACAACAACTACGAGCGCGGCGTCCTGGAGCTGTTCTCTGGCTCGCCTCAGCATCACGACAAACACCGCTTCATCGACCGGGACTGGACGGGCCTGAGGGCTCCGGTGGACGCCGCCATGGCCGGCAGGATGTACGTGCCTCCGGCGAGGCCCGCCAGACGCCACGACGATACCGGGCCCGACCAGCAGGGGGGGCAACAGCGAGGccagcagtggaaccagcagtggaaccagcagtggaaccatcaggggaacccccagtaccagcagtacggacagcagtgggaccagcagtgggCTCGGAGGAGGCAACGCCGCTCGCCCGCCGGCTGGGGGGCCGCGGCTGAGCGGGGGACGAACGTGGGGCAGGAATATgcggagagggggatggagatgggtctgaggttggcggagaggaggatggagatgggtctgaggttggccgagaggaggatggagatgCAAGAGAGGCTCGGGCGGGACTGGGAACGACGGTGGAATCAAGACTGGGACCAGCACAGACGTCAAGATGGCCACCGTCAGAACCACGGGGGCCACTACGACTCCAGAGGCGACCGGGGGTCCGTCCAGGGGGTTCTGCCCATCCAGAGCATCTATTTCTTCAAAGGAGCGACGTACTACCGAGTCGACCTCAAGACCAAGAAGGTGGACCTCGCCACGCCTCCGTATCCCAGGTCCATCGCCAAGTACTGGTTCGGATGTTCAGACGCCACCGGGGCAGAAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00045	Hemopexin	Hemopexin	Repeat	Interproscan
PF01033	Somatomedin_B	Somatomedin B domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000585	Domain	Hemopexin-like domain	Interproscan
IPR001212	Domain	Somatomedin B domain	Interproscan
IPR018487	Repeat	Hemopexin-like repeats	Interproscan
IPR020436	Domain	Somatomedin B domain, chordata	Interproscan
IPR036024	Homologous_superfamily	Somatomedin B-like domain superfamily	Interproscan
IPR036375	Homologous_superfamily	Hemopexin-like domain superfamily	Interproscan
IPR051298	Family	Heme transport and cell adhesion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22917	HEMOPEXIN DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005044	Molecular Function	scavenger receptor activity	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0007160	Biological Process	cell-matrix adhesion	Interproscan
GO:0030247	Molecular Function	polysaccharide binding	Interproscan
GO:0033627	Biological Process	cell adhesion mediated by integrin	Interproscan
GO:0050840	Molecular Function	extracellular matrix binding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-