Gene detail

Detailed information of HS17922 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17922	4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN	chr20	23365828	23371518	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17922

ATGGAGCAGATTCAAGAGGTATGGCGAGATGAAACTTCAGCAGCAGCAACAGTTGGCCAACTCTCTAAAACATGTGTGcATTCTTACCCCCGCGGTGAAAAGGAAGTAAAGCCCCGTAACCTAACTGTGTGGCCCACTTGCAGCCGGGCAGGATGCCTCTGAACGCGGGAaCCACCGGGTACGGCAGCGTGACGGGCAGCGTGGCCGGCCCCGGGCTGTCGGCCAGCGGCGcGGGCGGCTCGGAGTCGGCCCCGCTGCTCATCCGGGAGCCTGAGCCGGTGCCTTACCAGCAGTGGCAGCCCCTGACCAAGGAGGAGCTGGAGCTCGCCGCGGGGGGTCCCCATTGGAGGAAGGCGCGTTGTTACCTGTTGCTGCTGTTCTGGCTGGCGTGGGTGGCCATGATCTCCGGCGCCATCGCCATCTTGATAATGAGCCCGCGGCCCGTTGCAATGTCCCTCGAATGGTGGCAGAAGACGCTGTTCTACCGGCTGCAGCCCGACCTGCTCGCGGAGAAGCAAGCcGGCGGGTCaGTGGGCGTCAATGGTGAGCAAAGGCCGGCGTCATTAGGGAAATAAAGTTTTTTTGCAAATCAAAACGGAAAAAACGTTATgATGACCTTGTGTATGTCTTGTCACGTGCTTGGGTGCCTTGTGCAAAATATGAGCAGCTGGACCCCTATTAATGAGTTATTCTCACTCTGTCATTTAATCAtGTTTCTGCTCTTCATACAAACTACTTCCATTTTTAAAGTGTGGCAATTTGATTAAATACATTGATTCAAGAAATGTGTTTTAATGAAAGAGGAAAACTTCATTGATTTTGACACCGACATATCCTGAGAGGCTTTAAGGCCCTTGTTATGTCGGATGACACTGCGGCTCTAATTATGCCTATTCCCAAACAACAATATTTTTAAGTGAACACAATCTAGTTTGAGCTATCTGAGCTCCAGGTAGTATAGCCTTGCTACGTAGAtATTGTTTATTGGTGGCGATTCAGTTCTTCCAGTAAATAGCTGCTGGATGATAATAACCCGAGAGCTGTGATGATGACTGTATGATGCTTTTTTTCTCTCACTGTTATTGTGTCATACTTTGGATTAAAAAAGTTGATGTTTCTCCGGGTGGAAAACTACTTTATCTCACACTGTAATAGACATCACATAATTAATATTGCAGGCTGTATCCATGCTTGCGACAAACTTTAGAAAAGTTATTGAGAGCCCTGGTATGTTGTTGTTTTGACCCTCTGCATGGCAATTCACCAACGAAAAGATGTTTAAGAAAATGTGTGCAAATATTTAGCCTTAATATAACTTTAATACAACTTtTAATTATGAAAGCGTAAACCTAAAGTGTGTGTGTTTTAACCCCAGCACTGTGTGAGCAGCTGCCCTCCCTGCGGGCCCTGGGTATAGGAGCTCTAATCCTGGAGGGTCTGTTTGACAAGAAGGCCTCTTCTTTGAACCTCAATGTCACCGGTGAAAGATTTGGGACTTTGCCTCAGATCCAGCATCTGCTTATAGAGAGCCACAGAGCAGGTGAGTGGTCCTCCTTTTGTCCGCCTGCATCGGTGGACCGTATTCACTTTATTTTTGTGTATTGGGCCCGCAGATCTCAAAGTGGTGTTGGACGTCTGTGAAGTGGATCTATTGGGGCCTCGGGATGCAGTGGGAAACTCTGCCGCTGACAATACTTTCCCCCAGCATGCCcTTCGGTTCTGGCTGGAGCAGGGTGTGGCaGGCTTTGTTATATGCGACACGGATGCAGCCTATTCAGGAAgGGTAAAATAATGCTTCCACACGTTTTGGGGATTTCTAACAAGCGGAGTTCCCACAAATTAACTTTTTTTTcCTTATATCAGACACTCCTGGAGTGGAAgGGTGTCTTTAAAGAATTCAGCAGTGAGGAGATGAAACGGTATTGTTATACAcGCTATTTaAATACAaAATAATATAAAcagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatggtcatttccaggcctggaaagataatgggaaaaaaactcaaatcataaaagttttggaaaagtcatggaaatttgttatcacgtgttcatttacgccgagtttgaaataatgaatatgttttttaaagaaagacgctcaaaatataagccggcgtacacaatcaatacgcaacattttctacatttttcatgtctatcccgagatttcagtttggtcatggaaatttggttaaaagtcatggaaaaatcatagaaaaccattggtcaaaatgtgtaaaccctgtATAAAGCAAAGTGTATAAAATGAAGCTCAACGGTGTCCGTCTCTTCAGGATTGCGGTGGTCAAACAGACGAGAGACGTTTTGCCGCCTCTAAACCAGGGCAATGTTACGCTGGTGGATGTGGTCATGAGGTCAATTCTTCCATCTTCACAATACCTCCTGTCTACTAAGGAAGTCGCGAGTGCCATAGAGACACGtCTGCAAACAAGTGGAGAAGACATATGGCCCAGCTGGACGGTAAGACACGCGCTATCGATATTAAATAGTTGCAGGGTATATTTTGGATTGCTCGATTTATCGTTGTAGCAtTAACGATACATAAATAATTAACTATTTCCTGCAGGTTGGAGGTAAAGCATCCCTTGAATTGAAGGAATTACTCCTGGTGTTGCTGATGACTCTGCCAGGGTCACCTGCAGTGCAGTATGACGAAGACCTCACCCAAGCACAGGTGAAGAAGACCCTTTGAGACAAGTGgTCACCGGCCTTTttaaccctcctgttacctttggggtcaatttgaccccattcaatgtttaatgtctctaaaaaaatatgattgacatctttttttttgcttcatatttcatgaggtttcataatttattgtggacaactgggaaaacataaaattcacatgatatgttttcaatgtcctgaacacaacttgtacgcatcggtgttccttggggtcaatttgaccccaggctgtttttcaccgtgtaaaacatctaagaaatatcaactttgtaatttatttaaagggctatttaggtattcaacaaacaaacataaagtacctcacacttaaacttgggaaacgatattaattctaataattttctggaggttttaattgctggggtcaaaaagggtaaaagatgtcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatcggaccaggaaaaactcccaaataacccttcagggggaaaaaggaagaaacctgcaggagagcaacagaggaggatccctctccaggatggacagatgcaatagatgtcatgtgtacagaaggacagatttagagttaaaatacattcaatgaatatgacagagtgtatgaatagttcatagtaggcatattccacgatggagacctccacgatccatcaggcagatggcggtggggaggaggagtgggcggagtctcaacaggacagtggcgcagtcaggagcaggaattTGAAGGTAACTGGAGGGTTAAAGCCCAAGATCCCTgacttgaggctttttatttcacgtaattttaatttaatgaaattaaactctttggttcagcttttcaaattgatgtgaccaagaacacaaaaaattacttgatttcaataaattattatttgttaactgcacacgatgtgaacaagatgacacatctacaatgagcagctggatgaactaccaatataatatgttgtgtttttaactgaagtcacaacacttgacgacattctcagtcagtgcaactaaagtaagttcagctcttagtccaatcacaatgccctcagaggtcatgtgactcgagtcggtgcgttggctgtgactgaacaccgtctgtgagcttgtcgttcataagcacagacggccagtctgaggcggtctgtctgtaatccggctcccggattggtgctttttctgaactccacttccgtggttttcaggacaaatttgacattcagaaaagttttgatccgttattccttctgaacttcgaccgttggtgattacgttaacaccaacgcgacaggcgccctcgcatttaaataataataataaatacgagaatgTTTGAATCATTAACGaTTATGTTTCACATTTaGTCATGATTCTAATCAAGATAAGTGAATGTATAAATAAGCACTATATAGCCACACTgGAATATAATGTACATTGTGCAACAGCATCTGCACCGACAATCACCGGCGTGATTTTAATCTGAAGTTGCCTGCGGTGTCTGTAGTTTGTGTgTCTTCAGTtgCATGCCCTTATAAGGAGCTGGGGGCgTTTCTGTATGCAAATCCAGGTGCGCGAGAACGCGTTCAATTTAacgaccctcattcggggagcacagctgagaacactacggccgtctgcaggggttcatgaatcggaagatcttttctgacgtttgtttttttcgaagtcggaaagaaaacatttcagaagacgcttcagaaaatgttcgaggccgaggcccaatgtgttactgcatttattttggagagcgaccgggaaagtctcctagattgaccggttgGCGACCATTGTTTTAGACCATCGATTATTAATTAAGTTCACATGACCCAATAATGCTTTTCTGTCTCTAAAAGTCGGCCGCATAGACACGGACgAATCACCAGACACCCACACACTGAGCaactagaacgggcactcggtagagcgcataccttcgcatatcacaagatcgggcattgaattatgaacattttggcattagttgcatgccaattggatacaaattgaccgtgctatggtaaaaagaagatgttgaccttttcatgaccttgacccgatcgatcccaaaatctaatcaaatggtccccggataataacaaatcatcgcaccaaatttcatgcgattcaagaagatgttgaccttttcatgaccttgacctttgacacaatcgatcccaaaatctaatcaaatggtccccggataataacaaatcatcgcaccaaatttcatgcgattcggtttaatactttttgagttatgcgaggaacacgcatacaaataaataaatacacggcgatcaaaacataaacttccgtattttcaatgcgaaggtaaTAAAGACGGAGATCCCTCTTGAACTACTCGAGTACTTGCTTGGTCTAGTAAAGTTAAAGATGCTCAGCCTTGGTTGTGACTGTCTGACCGCTCTCCCTCCCTCAGGACAAGGAGCGCTCGGTTGCAGCGCTCTTCTCCACCCTCGCTGcCTCCAGAGCCCGAGAAGAAGCTCTTCTGTTTGGCAGTTTTACTTTCCTCCCCTTTAATtcttccaccgcctccaactcctcctcctctaactccacccttccccctccacccatcctGGCCTTCTTGCGCTCCTGGGGTTGTGTCCACTTCCTCGTcCTGCTCAACGTCGGGCCCGAGCCCGGGGGCCTGGATGCCGCCCGGGCCCCCAGCCTGCCCACGGCGGGAGTCTTCGTGGCCAACTCGAGGATGGACCGCGTGGGATCCACGTCTCTGGACACGTTGGTGCTGCGGCCCCGCGAGGCCGCCGTCATCAAACTGTTCGAGCCGGGCAGCTACTCGATGGAGCAGATTCAAGAGCCGGGCAGGATGCCTCTGAACGCGGGAaCCACCGGGTACGGCAGCGTGACGGGCAGCGTGGCCGGCCCCGGGCTGTCGGCCAGCGGCGcGGGCGGCTCGGAGTCGGCCCCGCTGCTCATCCGGGAGCCTGAGCCGGTGCCTTACCAGCAGTGGCAGCCCCTGACCAAGGAGGAGCTGGAGCTCGCCGCGGGGGGTCCCCATTGGAGGAAGGCGCGTTGTTACCTGTTGCTGCTGTTCTGGCTGGCGTGGGTGGCCATGATCTCCGGCGCCATCGCCATCTTGATAATGAGCCCGCGGCCCGTTGCAATGTCCCTCGAATGGTGGCAGAAGACGCTGTTCTACCGGCTGCAGCCCGACCTGCTCGCGGAGAAGCAAGCcGGCGGGTCaGTGGGCGTCAATGCACTGTGTGAGCAGCTGCCCTCCCTGCGGGCCCTGGGTATAGGAGCTCTAATCCTGGAGGGTCTGTTTGACAAGAAGGCCTCTTCTTTGAACCTCAATGTCACCGGTGAAAGATTTGGGACTTTGCCTCAGATCCAGCATCTGCTTATAGAGAGCCACAGAGCAGATCTCAAAGTGGTGTTGGACGTCTGTGAAGTGGATCTATTGGGGCCTCGGGATGCAGTGGGAAACTCTGCCGCTGACAATACTTTCCCCCAGCATGCCcTTCGGTTCTGGCTGGAGCAGGGTGTGGCaGGCTTTGTTATATGCGACACGGATGCAGCCTATTCAGGAAgGACACTCCTGGAGTGGAAgGGTGTCTTTAAAGAATTCAGCAGTGAGGAGATGAAACGGATTGCGGTGGTCAAACAGACGAGAGACGTTTTGCCGCCTCTAAACCAGGGCAATGTTACGCTGGTGGATGTGGTCATGAGGTCAATTCTTCCATCTTCACAATACCTCCTGTCTACTAAGGAAGTCGCGAGTGCCATAGAGACACGtCTGCAAACAAGTGGAGAAGACATATGGCCCAGCTGGACGGTTGGAGGTAAAGCATCCCTTGAATTGAAGGAATTACTCCTGGTGTTGCTGATGACTCTGCCAGGGTCACCTGCAGTGCAGTATGACGAAGACCTCACCCAAGCACAGGACAAGGAGCGCTCGGTTGCAGCGCTCTTCTCCACCCTCGCTGcCTCCAGAGCCCGAGAAGAAGCTCTTCTGTTTGGCAGTTTTACTTTCCTCCCCTTTAATtcttccaccgcctccaactcctcctcctctaactccacccttccccctccacccatcctGGCCTTCTTGCGCTCCTGGGGTTGTGTCCACTTCCTCGTcCTGCTCAACGTCGGGCCCGAGCCCGGGGGCCTGGATGCCGCCCGGGCCCCCAGCCTGCCCACGGCGGGAGTCTTCGTGGCCAACTCGAGGATGGACCGCGTGGGATCCACGTCTCTGGACACGTTGGTGCTGCGGCCCCGCGAGGCCGCCGTCATCAAACTGTTCGAGCCGGGCAGCTACTCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16028	SLC3A2_N	Solute carrier family 3 member 2 N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR031984	Domain	Solute carrier family 3 member 2, N-terminal domain	Interproscan
IPR042280	Family	Amino acid transporter heavy chain SLC3A2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46673	4F2 CELL-SURFACE ANTIGEN HEAVY CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006865	Biological Process	amino acid transport	Interproscan
GO:0015173	Molecular Function	aromatic amino acid transmembrane transporter activity	Interproscan
GO:0015180	Molecular Function	L-alanine transmembrane transporter activity	Interproscan
GO:0015190	Molecular Function	L-leucine transmembrane transporter activity	Interproscan
GO:0015823	Biological Process	phenylalanine transport	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:1903801	Biological Process	L-leucine import across plasma membrane	Interproscan
GO:1904273	Biological Process	L-alanine import across plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-