Gene detail

Detailed information of HS17813 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17813	CCAAT DISPLACEMENT PROTEIN-RELATED	chr20	20608894	20611470	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17813

ATGGCGTGTCTGCCGCGCCCCGACGCTGACGGGTCGGAGGTCGGCAACATGGAGAACATCCCGGGGCCGATCAAAGAGGCCTCTGCCATGTTTACTGGTATGTCTTCTTTAAAAGTTCATTTAAAGGACTGAATGCACATTGTGTTTTCTTTGGATCCTCCCTTTGACCTAAGAAAAAGTGCAACATTACCCCACCCCCCAAAAAATATCTTGATGTGACATTGCACGTTTTAAGTGGTGCAATTAAGAGCACACTGAATCCCCGGTGATGTTCTCAGGAGGCGACGGTACTTCCCCCAAACAGCCGTTGGACTGCATTTCCTAGGAAGTTTATTCAAGCCCTCGGGATGAGCAGCTTTCTTTCTCTCGCTTGAACATTTTCAGTGACATCTAGTGATGAATTGTGTGCTCAaCCCCCCCCCCCCCcAACCTTGAAGCTTAAAAAGGAACCCTGAAAAGGAGGATATGAATTTGGGTGTCTTTAAAATATGAATTCCCTCCCCTCGTTGTTAACTAAGACGGACTCTTTTGAATGAAGCGAGCTTTCGAGGCTTGTGAAAGTTGCTCATTGAAAAGTCTTCGAGGCGAGAGCCTGCGATGTGTGTCCGTCGTGCCCTGAAGTCTGACTTGCAGACAGCACAACTTCTCCGACTGAAGTGAGGTGAACCTGCTGAGCTGAGGCGCTGCAGGACGCTTGTTTGAAAACTCGCCTCGAAGAACGATTTTAAGAGCTTCTTTTTTTGAGGTGTTTACTAGAATTTGACGGGCGAATAAAAGAGATATTAGCATCCAATTGAACCACAAACCATAGTTAAAATAACCCATAAAAAAAAGAAAAATCTTGGTCATAAAGCTTCATTATATATGCACGTGACAGAGGAAGTGGATTATGGTATTTCAGTGTATTCTACAAAAACATCTGTGTAACCTCCAGGTTCAGGCATGGGCCCCCATCCTGAGCTTCCTCAGGGCCAGATGGACTCTCTGCTCTCCATCATCTCCAGCCAGAGGGAGAGGTTTCGCTCCCGCAATCAGGAGctggaagctgtgagtcagacacacacacacacacgcacacacacacgcacacacacacacacacacagataactaagtgatcaagtgtttGTCCCCTGCAGGAGAATCGCTCCGTGCAGCAGACCATGCAGGCTCTGCAGAGTGAACTGGACAGCCTGCGAGCAGACAACATCAAACTCTACGAGAAAATCAAATTCCTGCAGAGCTACCCTGgcagagtgagagtagagtgtgtgtgtgtgggtgtgtatgtgtgcgtgtgtgtgcgtgtTTTTTCTATCTTGTTCATTGTAAATGTGTGGCTCTGCGTGTCTTCTCCGCGCTGCAGGCcGGCGCGAGTGACGACACGGTGACGCGCTACTCCTCCCAGTACGAGGAGAGACTGGATCCGTTCGCCTCCTTCAGCAAGAAGGTACCAGACACACCTGCAGTTGAAACACGAGTGAAACTCTTTCTCTCGCCCGCTCTGAAACCACCTGCCATCTCTTGGTCCCTTATTTACTGTCAGAGTTTGTTCCTCTGATATTTGACCACTGACTAAACGTCAATAGAGCTTCTGTTGGGGGCGTTCCTCCACCATTAGTCACGGGTTACGTTCTGATTCGTAGATGTTGTGGCGACGTCGAGTACCGGGACGACCAGAAATAGGTTCTAGTCTCACTATTTCCATTTATATTGTTTTGACACAATTGGTGATTATGGGATGGAAGCAACACGCCCATCTGTCTGTGGGCTTTGTTGACGGTCATTAATCCTGGGGAATGTCGGAGCTGAATTTGAGGTTAATGAGGCAGTTTGAAACACAAATGACGTCATATTCTATGGAGGGAGATTACACCTCCTTCCTCAAAGTATCTCCCTGAAGCCAATGTCCCAAACACCACGGACTGTAAAGACATCATTTTAATATAACTTGTTTGAGACGTTTGATCTACATGGATTCACACTTCTTCATTGTTGAGGCCCGACTCTGTGTTTGCAGGAGCGTCAGCGCCGATACCTGAGCTTAAGCCCCTGGGATAAAGCAACTCTGAGCCTcgtaagcacacacacacacacacacacacacacacatgtgatatgtcgttgcatgtCCTATATCTCGACACTGTGTGTCTCAGGGTCGTGTGATCCTCTCCAACAAGATGGCCAGGACTGTTGCGTTCTTCTACACCTTGTTCCTGCATTGCCTGGTCTTCCTGGTGGGTCTCGgTTCAACCCCCGATGCAGTCTGGTGCTACATGAATGGCTCCTTCTCGTTGGCTTCAGGGATTTTTTTGTATCTGTCCTCTTTTTTTCAGGTGCTGTACAAGACCGCCTGGAGCGAGAGCATCGGGAGGGATTGCTCTGCTTTCTGCGCCAAAAAGTGAGTTTTGCGTGAACTTTTCTAAAGTCACCTCGCGTAAGAATGGCCATTTTGATCACATGTGCAAGTAGCCTACCTAATGACATTTTTTTTATTTTTATTATCTTTATTTCTGTCTCACCTGCAGGTACTCTGACCACATCCACCGTTTCCATGAGAACGACCAAAACCTTATGGCGTGTCTGCCGCGCCCCGACGCTGACGGGTCGGAGGTCGGCAACATGGAGAACATCCCGGGGCCGATCAAAGAGGCCTCTGCCATGTTTACTGGTTCAGGCATGGGCCCCCATCCTGAGCTTCCTCAGGGCCAGATGGACTCTCTGCTCTCCATCATCTCCAGCCAGAGGGAGAGGTTTCGCTCCCGCAATCAGGAGctggaagctGAGAATCGCTCCGTGCAGCAGACCATGCAGGCTCTGCAGAGTGAACTGGACAGCCTGCGAGCAGACAACATCAAACTCTACGAGAAAATCAAATTCCTGCAGAGCTACCCTGgcagaGCcGGCGCGAGTGACGACACGGTGACGCGCTACTCCTCCCAGTACGAGGAGAGACTGGATCCGTTCGCCTCCTTCAGCAAGAAGGAGCGTCAGCGCCGATACCTGAGCTTAAGCCCCTGGGATAAAGCAACTCTGAGCCTcGGTCGTGTGATCCTCTCCAACAAGATGGCCAGGACTGTTGCGTTCTTCTACACCTTGTTCCTGCATTGCCTGGTCTTCCTGGTGCTGTACAAGACCGCCTGGAGCGAGAGCATCGGGAGGGATTGCTCTGCTTTCTGCGCCAAAAAGTACTCTGACCACATCCACCGTTTCCATGAGAACGACCAAAACCTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08172	CASP_C	CASP C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012955	Domain	CASP, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14043	CCAAT DISPLACEMENT PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-