Gene detail

Detailed information of HS17715 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17715	ANTIGEN BSP, PUTATIVE-RELATED	chr20	18007390	18009324	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17715

ttgtgtgtTGCAGGCTGTGGCCTGGAGTTCCTGCTTGTTCTCTGTGGGCTGGAGTTTTCCTGGTCCTGCCCCCGTCACTGTATCTGCTACAGTGCACCCTCCACCGTCTCCTGCCAAGCCCATAACTTCCTGTCGGTCCCCGAAGCCATTCCTCTCGACAGTGAGCGCATCTTCCTCCAGAACAATAAGATCCATCGCTTACTTCGGGGACACTTCAGCTCCAATACGGTCACTCTGTGGATATACTCCAATAACATCACTTACATTGAGCCGACCACATTCCACGGCTTCACGCTGCTCGAGGAGCTGGACCTCGGAGACAACCGCCACCTGCGCTCTTTGGCGGAAGACACGTTCCACGGGCTGAATCGGCTCAATGCGCTTCACCTGTACCGCTGTGGGCTCAGTTCACTCCCTAATAACATCTTCCAAGGCCTCAGAAACCTGCAGTATCTCTACTTGCAGGTACACTAAACGGTGTTTACCACTCATACTCTAGTAGGGCTGTCACTCTTCCACAAGAACAAATTTGAACTAGCACAACCTATGTCGACAATTTCTAAACGATTCTGTATAGTGACTGTGTTGTTGAGTCGCAGTGCCTCTCTTGCCTCACTTGAGTGACAAGCTGACAGTTGCATTTCATATCAGCAGCAAACAAACCATACTTCTATCCACAGTTTTTCCATCTGTGGTGTCAAATCCAAATTTATTTTGCGCCTCACAGACGGTTTGGTCTCATTCAGCACAGCTTGTTATTTTTCTCCATTTAAAAAAAAAAATCACAATAGTCTCCTTTTCTGAAGAAATGCTAAAGGTCAGATGAACGCTCCCCTGGAGTACACGGCACAGCCTCTAGTGCTTATTCACTGGGAATTTGAACAGATACTATTTGCATCATGGGCTGATTTATAAAACATATAAATGGCATGTAGACACAAGTTAATGTGGCAGTGAATTAGCAGAATAATGTAGGAAGGAAAACATTGCACAATATGTCTATATCTATCGATATCTAATGACTATGTGCGTTCCGTATCTCCCCAGGATAATCATCTGAAGTTCCTGCAGGATGACACATTTATGGACCTCCACAACCTGAGCCACCTGTTCCTGCATGGCAATCGTCTGTGGAGCCTGAACCAGAACACGTTTAGAGGCCTTCGGGCCTTGGACCGACTGCTTCTGCACCAAAACCAGATTGAGTGGGTTGACCACCAGGCCTTCCACGACCTCAAACGTCTCACCACCCTCTATCTGTTCAACAACAGCCTGATACAGCTCTCCGGGGAGTGTCTGGACACACTGCCCGGATTGGAATACCTGCGTCTCAACGACAACCCCTGGTCATGTGACTGCAAGGCCCTGTCGCTTTGGGAGTGGTTGAAGCGCTTTCGGGGCTCTACGTCTTCAGTGGGTTGCCAGGCGCCAGCTGATATGATTGGTAAAGACCTCAAGGAGCTGCGCAAGGAGGACTTACCCAACTGTTCACCAACTGTTCCTAATTCTGAGTCCAGAGCCCAGACCAACAATGTATCTGGCACGGTGAATCCGTCCCTTAATCGTGGTGGGGTGGTGGGCTCTGTAGGGCAGACCCACATTGTGCACCCCTCAAGGCCTGGCCGCTCTCGGAACTGCACAAAGCCTCATAACAGGGGCAAGGGGAAGGGTGACAATGAGGTTCACCACTCAAAGGAGGTCATGGCAGACAAGGAGGATTCCTCCCCGGATTTCACAGACGGGGGCAAACATGACCACACATCCCCAGACGGCACCGTCACACGGAGGAAGCACAAGTGTATTCCCCGGACCACTGTTCGCCCCCCTAGTGGGGTTCAGCAAGCCAACAACAGGGCAACCTTATCCCAGTCATTACTACATGTCTGTGTGCTCTTCGCGGCCTTGATAACGCCAAATATTGAcTTTATTCTCCGTttgtgtgtTGCAGGCTGTGGCCTGGAGTTCCTGCTTGTTCTCTGTGGGCTGGAGTTTTCCTGGTCCTGCCCCCGTCACTGTATCTGCTACAGTGCACCCTCCACCGTCTCCTGCCAAGCCCATAACTTCCTGTCGGTCCCCGAAGCCATTCCTCTCGACAGTGAGCGCATCTTCCTCCAGAACAATAAGATCCATCGCTTACTTCGGGGACACTTCAGCTCCAATACGGTCACTCTGTGGATATACTCCAATAACATCACTTACATTGAGCCGACCACATTCCACGGCTTCACGCTGCTCGAGGAGCTGGACCTCGGAGACAACCGCCACCTGCGCTCTTTGGCGGAAGACACGTTCCACGGGCTGAATCGGCTCAATGCGCTTCACCTGTACCGCTGTGGGCTCAGTTCACTCCCTAATAACATCTTCCAAGGCCTCAGAAACCTGCAGTATCTCTACTTGCAGGATAATCATCTGAAGTTCCTGCAGGATGACACATTTATGGACCTCCACAACCTGAGCCACCTGTTCCTGCATGGCAATCGTCTGTGGAGCCTGAACCAGAACACGTTTAGAGGCCTTCGGGCCTTGGACCGACTGCTTCTGCACCAAAACCAGATTGAGTGGGTTGACCACCAGGCCTTCCACGACCTCAAACGTCTCACCACCCTCTATCTGTTCAACAACAGCCTGATACAGCTCTCCGGGGAGTGTCTGGACACACTGCCCGGATTGGAATACCTGCGTCTCAACGACAACCCCTGGTCATGTGACTGCAAGGCCCTGTCGCTTTGGGAGTGGTTGAAGCGCTTTCGGGGCTCTACGTCTTCAGTGGGTTGCCAGGCGCCAGCTGATATGATTGGTAAAGACCTCAAGGAGCTGCGCAAGGAGGACTTACCCAACTGTTCACCAACTGTTCCTAATTCTGAGTCCAGAGCCCAGACCAACAATGTATCTGGCACGGTGAATCCGTCCCTTAATCGTGGTGGGGTGGTGGGCTCTGTAGGGCAGACCCACATTGTGCACCCCTCAAGGCCTGGCCGCTCTCGGAACTGCACAAAGCCTCATAACAGGGGCAAGGGGAAGGGTGACAATGAGGTTCACCACTCAAAGGAGGTCATGGCAGACAAGGAGGATTCCTCCCCGGATTTCACAGACGGGGGCAAACATGACCACACATCCCCAGACGGCACCGTCACACGGAGGAAGCACAAGTGTATTCCCCGGACCACTGTTCGCCCCCCTAGTGGGGTTCAGCAAGCCAACAACAGGGCAACCTTATCCCAGTCATTACTACATGTCTGTGTGCTCTTCGCGGCCTTGATAACGCCAAATATTGAcTTTATTCTCCGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR050541	Family	Leucine-rich repeat and transmembrane domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24369	ANTIGEN BSP, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0035025	Biological Process	positive regulation of Rho protein signal transduction	Interproscan
GO:1905573	Molecular Function	ganglioside GM1 binding	Interproscan
GO:1905576	Molecular Function	ganglioside GT1b binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-