Gene detail

Detailed information of HS17690 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17690	RAS-RELATED PROTEIN RAB	chr20	17404664	17407991	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17690

ATtATGTACTCGTTAAAATGTCTTCCTCTCTCTGTCCAGCTCACCACGTGTGTCTCCACTAAACATTTACCGCAAGGCTTCATGTCCGTCCGAGTCTCAGCCATGAGTGTTTTTCCTCCTGTCCGAAAGGACCGTATCATTGCTCAGCTCCCTCAGGTGAAGTCATGTTCAATCAGGATCACCTATATAGCTGTCTACGATCCCTCTAAAACAGCCTCACAAAtTCCtCTTCCTCTCTTGTAGTATTTCAGGAAGGAGGCAGCCTTCCACACGAAGGAGGACTTCAACAGTAAAGTGAGGACGGCCTGTCAGGAGCAGCGCACCGGCACTGTGGGGTGAGTGCGGCAACCAGCAGCCCGATGACACTGGCCGgGATGCTTTTGTGTCACTTATTTACATTTACGTTGCGGCTTCTCTTTTATTTTTCTCAGCAGATTTAAAATCTCAAAGGTCATTGTTGTGGGTGAtCTGGCGGTGGGGAAAACCTGTCTGATTAATAGGTAAGCTCCAACACCGTCACTGTTGCAGTTCTGGGAATAAATAACTCAAACAAGAAATAACTCAGAGGACACGTACCTCCTTCAAGGAAGCACCcTCTGCTATGTTTGTTATTCTACTCTCAAAAGTGCCGGGGGAAAAAGTACATTCTGTAATAGAcagtggtggaaagtaaccaaatatctgtacttcaagtactgtacttgagtacaattttaaatattactacatttttagagAGATCTGTTGTACGCTTCGGCATTTATCTGGCAGCTGGAGTTACTCGTTACTTTTCAGATTATGTTTAAcaaaacatatgaccaattcataaaatgtgatactgtgctatagacataacaatccaacagtatataaggtatacctcctccagctgtaacacttaaaTGCTGCTATTAAGTTCTACGTTCAGTGATCATATTTAAATAATGTGATAtgcatccaactgaatacccctccgcccgcccctctccccgtcagggaacgtaaacacaagaaaaggcttgtgctaaagccagagtttggcttgtccgctctgggctactgtagaaacgtggcagtacaacatggcgggctccatgcagaggacccacagttaatgaaaatataaACAGCTTATTCTAAGCTAACAAGATTTTAACGTTTTTCTAGATTTTGCAAAGATGCTTTTGATAAAAACTACAAGGCAACGATCGGTGTTGACTTTGAGATGGAGCGCTTCGAAGTGCTGGGCGTTCCTTTCAGCCTTCAGATGTAAGTGTGATTTCTTTCATTTCTACAAAATTTAAAAAATAAGCTAACTTAGTCTGTCTGATTTGACATTGTTTAAATGCCTGTCCCTATTTCACAGCTGGGACACTGCAGGCCAAGAGAGGTTCAAGTGCATTGCCTCCACGTACTACAGAGGAGCCCAGGGTGAGAGAATGCTGTGCAACCTTTACAATACATGTATGAAAGAATCCTCTTTTCATACACACAACGTCAGGGGATAAAGGAAGCTGTGTACATATAACACTAATGGAATGTGTGTGTTAAAATTTATTTtATATGTTCTCTTCTTCCAGTTGTGATTATCGCGTTTGATGTAAACAACGTGGCCTCTTTGGGCCATGTGAGGTGAGCTTATTGGTGATtAGCAGGTTGCTGGGCAGGTTgCCAGCCCGACTGGGGGACTTGATCTTGTGTTGTTGTGTCTGCAGACAGTGGCTCGAAGACGCCCTGAAAGAGAAtGACCCCACtGCGGTGCAGCTGTTCCTTGTTGGCACAAAGAAAGACCTGAGCGTACGTCTGGTGACTGTTTGAAGTGGACACGCCTGTCAACGTTTCTCTGTGTTTTACTGGAGTTAAATGGGAATTGTTTTGGGCACATTTCGTTTGTGTCCCGACTCAAAGCCCAGTCATTTATTTCCCCCGTTTTTCACTTCACGAGATTTCAAAGCTTTCCTGGTGAAGGCCGAAACAATGGACATGCATACATTTATAAGACATTACTAACGTTTTTACGCAGTGGTCTTCTTTTTTAAGAATTTTTTTTTTCTTTCTTAAACTATTTAAAATGTGTCTCTTATTTCACTCTCCTGGGATTTTTAGAGGATATTTGGTGTTTCGTTGTTGTCTGTTTGGACAATGCTGTGACTTGTGTAACAAATTAGATTACTGGATTATGTAATTTACCTATTTCTTATTTCAAGAGTACTTCTCTGATTGATTTCTTTGCAGTAGAATATATTTGACAGAGAACTGAATGTATTTTTGATTTCCTCTGGTTTCTCCGACAGTCTCCTGCACAGTATTCTCAGATCGAACAAGATGCCCTCAAAATAGCACAAGAGATCAGtGCAGAGTATTGGGCTGTGTCGTCGCTGACTGGTGAGTATTCGTGTTGAATACAGTAATATGACTCGATCAGAAAAGGGGGAGGGGTATATGTTTCCTCTTTGCAGAGGGGAGTGTAGTCTGATTTATTTGGGGGGGAAGCAGTGGAGGGTCTTTAATGTTTTGATGCCACAGATTTAGGTTTTAATTAATTTACTCTCAAAAGATTGAATAGTTTTCCTCTGCATATGGCAATATACCAAGGCCTGTTTTTGATGTAATTAATCATGTCCAAAATACTTTATTTTCTAGTTTGTTGTGTTCATCTTTATAGTTAGTAGGGATAGAACATTTCTTTCTCATTTCCTTTAAGAGCCAAAAGTCTCTATGTAGAATTATTCTCAAAAACAAAGTCCTAGGCCTAATGTATACCTGAAAGATTGTTCTATTATCTGAGTCTTGATTTTCTATTTATTGGCAACATTAAGGATATGGTGAGAGAAAAACGTTTAAATGCGTACACAGAATGTATTTAGTAGCTCGTGGTTTAACCCCAATTCCTAATCAGTGATTTGGGCTGCACAAAATAATTGCCCCATTAACATTTAAATCTTTGAATCTGGGATGAGTTTAAAAAATGTTTACGTAGGTGAAGTTGCAATTAATAATCCTGGTGAAGTCAAACCTAATAATTTGCATACAGTCCCTAACTGATCAATATTTGCTCCATGCTGTAGGGGAAAACGTCAAAGAGTTTTTCTTTCGAGTTGCATCAGTGGCCTTTGAGACCAACGTTCTTGCTGAGTTGGAGAAAAGTGGATCGAGGCAAATTGGGGGCGTCGTCAGTGAGTATCTAAACTAAaGCCTCTGATGTCATGCACACCGTCACATTCTTCTCAGAGTTTTAACATCaTGCTGTTCATTGGTTCCAGGAATTAACAGCACTTCAAACAATGTGCATGCTTCATCAAAGAAGAAGCAGACAAACTGCTGCCAGATtATGTACTCGTTAAAATGTCTTCCTCTCTCTGTCCAGCTCACCACGTGTGTCTCCACTAAACATTTACCGCAAGGCTTCATGTCCGTCCGAGTCTCAGCCATGAGTGTTTTTCCTCCTGTCCGAAAGGACCGTATCATTGCTCAGCTCCCTCAGTATTTCAGGAAGGAGGCAGCCTTCCACACGAAGGAGGACTTCAACAGTAAAGTGAGGACGGCCTGTCAGGAGCAGCGCACCGGCACTGTGGGATTTAAAATCTCAAAGGTCATTGTTGTGGGTGAtCTGGCGGTGGGGAAAACCTGTCTGATTAATAGATTTTGCAAAGATGCTTTTGATAAAAACTACAAGGCAACGATCGGTGTTGACTTTGAGATGGAGCGCTTCGAAGTGCTGGGCGTTCCTTTCAGCCTTCAGATCTGGGACACTGCAGGCCAAGAGAGGTTCAAGTGCATTGCCTCCACGTACTACAGAGGAGCCCAGGTTGTGATTATCGCGTTTGATGTAAACAACGTGGCCTCTTTGGGCCATGTGAGACAGTGGCTCGAAGACGCCCTGAAAGAGAAtGACCCCACtGCGGTGCAGCTGTTCCTTGTTGGCACAAAGAAAGACCTGAGCTCTCCTGCACAGTATTCTCAGATCGAACAAGATGCCCTCAAAATAGCACAAGAGATCAGtGCAGAGTATTGGGCTGTGTCGTCGCTGACTGGGGAAAACGTCAAAGAGTTTTTCTTTCGAGTTGCATCAGTGGCCTTTGAGACCAACGTTCTTGCTGAGTTGGAGAAAAGTGGATCGAGGCAAATTGGGGGCGTCGTCAGAATTAACAGCACTTCAAACAATGTGCATGCTTCATCAAAGAAGAAGCAGACAAACTGCTGCCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0031985	Cellular Component	Golgi cisterna	Interproscan
GO:0043001	Biological Process	Golgi to plasma membrane protein transport	Interproscan
GO:0045335	Cellular Component	phagocytic vesicle	Interproscan
GO:0090385	Biological Process	phagosome-lysosome fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-