Gene detail

Detailed information of HS17674 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17674	UNCHARACTERIZED	chr20	17135642	17139285	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17674

ATGTTTAATGAAGATGATGACTGGAGTGACGAACAAGACGCTCAGACGCAAAACACAACTGTGCTCCGAAGCACTAAGAAGGCGAACAGCAGCACGAATGTCAAGGTAAATGTGCGAGTGGTTTTAAGTCCAGGTGTATTCCCATATGATCTATACTCATGTCTGGAGTCCAACATACAGAGCATACGATGGTGGAACCATTACGAAGGTCACATGATAGTCAGGAAATCTGTAGATTGATTTGTATTTGTTTTTAATTGATTAATACGTTCTGTTCTGGGAGAAAGTCAAGCAGGGAGACAATGTATATGCTATATATTGGACACGAAGAAATAGAAAATTGATGAAAAAACAATAGCTTACAAGTGTATACAAACACACACACACGTCCTAACTAAGTCAGGTATtTTAAAAGGTGTATTATTACTTCTTCACTCTTCCTTTaAAAAAAAAAAGACCAAATGTAATTTGTAACACAAGAAGCCATTACATATGTGAGTTCCCACCTCTACCAAGAAAAGGTGACACtTTTTAGATTGGACAGTCTAACATGTGGTTGCACGTTTCAGTTAAATAACTTATTGAATGTATTATTGTATTCACTGAATGTATCTCCGCATCAGTCCAATGTGGTTGGGAAGAAGAGCCTGATGCGGACCCTGCAGACACTGGGGTCAGTACCAGAGTGGAAGAATGACGATCATCAGCAGGACAGCGACAGTGAGGCCGATGTGGCCCCAACACACAGCAAGAGAAAGAAGAAAAAGAGGAAGAAGCGAAAGAAAGTTGAGACAACAGGAGAGCAGCAAGAGAGTGGAGACTTGGACCAGACCACTAATGGGCAGGCACTTGCATCAAAAAAGAGGAAGAAAGACGACACATTTGGTGAGTAAATAACTGCTTCAAGGCTTGTATTTTATTATTTTATTAACGGATGAGTGTTTATTGATAAAGAACAATGTTGATGTTTACATTACTTGCCTGTGCGATAATAGCCATATGTTTTTTATCTTCCCTTAAGTGGCGGCTCTGAAGTTAAAAACCTCATCCGTGAAGAAAACATCAGATAACGATATTATCAAATCCAAACCAGAGAACATGGAGGGACTGAACAGACAACAGTGGAAAAACAAAATGAAGAACAAGAGGAAATGTACAAATAAATACAGTCAGAATGAGCCAGAGAGGAAAATCAATAAAGCTGAATCTGCGGAGCAACATGAGCCAAAAGAGGAAGTCAAAATAGATTCATATAGcaacaacaacaacaacaGTCAGACCCCAGCCAAGAAAAAGCAAAGTAAACCACAGAAAATAAAAAAGATCAAAGTGGACACTGACGTATCTGTTCCCACAGACACACGGCCCCTCAGAGAGGAAAAGCAGCGAATTGTTCTCAAAGTTGGAAAAGACACAACTGAAAGTTCTGCAAAACAGGAAGCAGCTGTACCGCGGGTGGAGAACGGAGGTGAGCAGCACCAGTCGCCTTTGAAAAGACCCAAACCcGAGATGAGCAGAGAACAGATTCTGAAAAGAGAGAAGCTACGGAAATTGCTCCACCGACGGGAACCAGTCCAACGGGAGAGTCCCGCTGAGACGGAAGACACGCCTTTGAGCCCAGAGGAGGAGCTGAAACCGGACCGCTCCGCCTCCCTGAGGTCCCGCATGGAGCAGCGGCTGGAGTCGGCGCGTTTTCGGTACATtAATGAAGTTTTGTACAGCACGTCCAGCGGCGAGGCGAAGCGCATGTTCAAACAGGATCCGCAGGCCTTCgaGATCTACCACAGAGGATACACGGCGCAGGTTCAGCGGTGGCCCGCCAACCCAGTGGATGCCATCATCTCTTACATCCAACAGAAGTGAGATATTCTCATCAATGTTTATGACCCATCTCCGGCACAAGTGGGCCAATGAGCCGAGTTTATTTAGTTGCACACTTTGCAGCGGGGGCAACACACATTTCTGTTTGTGATTTTACgTCATAGTTTAGCCCTTTTGGAAAAAACACGGGTTGCTTCCTTCCATTGAAGTTTGTTGGACAACCAAACGAAAGTTACAAAGATTATGAATGTATAATATCCCAGTAGATGCAAAGACAAGCGATTCCTTATTTCGGCTCAACATCTGCAACAATTAACtCATGTCGGAACaGTGTTTAATTTGAGTCACCCCGTGTACTGAATTAAGATCCCTGCGTTAATCAATactgcatcatagatagatagatatatactttattaatccccaaggggaaatttgtcaaaaaggcataaagggcattgttacagacacacGTCTTTAGCTCAGCTTTTTCTaCTAACATTACCAGGGCCGCCTCGCTACACCGCCACAACAGAAGAAACATGATTTAATGTGCTTCACATTTCTTGCTGGGCGTCCAAAACTCCCATTATCTACATCAGTTATCTGCCGTCCACAGTAAATACCtCCATCCCTCTGCTGAACACTGTCAGCGAGGAGTAATGCAGGACATGATGCTGCACTGCGGGACTTGAAGCGATGCTTCATTCGGCTGCTGTGAGaAGACGGCTTTGTTGATGTCCGCAGTTTGGGAGAGGATCAACTGTTTCGACTcTTATGACATATTCTAATGTTCTCAAGTTGTAAACGCATCAATTGTGCCATTTCCCTCCAGACCTCCCTCTCTGGTGGTTGCAGACTTTGGTTGTGGCGACTGTAAGATCGCGCGCAGCGTGAAGAACAAAGTGCACAGCTTCGACCTGGCAGCTGCCTGCAAAGATGTCACGATCTGTGACATGGCCAACGTGAgtGTGTCGGTGTTTTCTGCAGGCCTGTTGCCAATCCTCTggcggtccacgcGGttgttggaagacataacgtattcttgttggaagacacaacgtattctCTGCGCAGGTCCCGCTTCGTGACGGCTGTGTGGACGTCGCCGTGTTCTGCCTcTCTCTCATGGGAACCAACCTGGCCGATTTTCTAGCAGAGGCCAACCGTGTGTTAAAGAAGGGGTAAGGGgtgtcacacacacacacacacactgtggaaatcagtacacgcacacagtgtgtgtgtgtgtgtgtgtaCTGATTTCCACAATTCTTGTAGGGGTGTCCTGAAGATAGCGGAAGTGGCGAGCAGGTTCGAGAATGTGCGGAACTTTATCAGCGCGCTGGCAGGACTGGGATTTAAGcTGGTGAACCAGGTGAGACGAGAACTCATCGGGGACAGGGAAACACTTTAAACACTTCCTTATTCGTCTAcTTTCTCATATTTTAAATGCATGTaGATGAAATGAAATTGTAAGCTCATCCTGCGATCAGGTTTGAGGTTATGGtGCTGTGGGCGGGAACCCTCAGGtCCGAAGTATATTCAGTAAATTGGTTTATTGCTGTcAaCACATTAATTAAAGTTAGCTATACATAACTTAAACAGCTCAGTCTGAAGATTTTAACCAACAGCCTTTCTGTAAACCATCTATCTAgTGAGTGAATATGTAAAGAGTGATTTGTGTTATGATTCTTTTGTTCTTCCTACAGGACACCAAGAGCACTCATTTCTACTCCTTTGAATTaCTGAAGACGGGAGACACTCCAGAAAATATCAAGAAATTTGGACTTCAGTTGAGGCCCTGCCTCTACAAGAAAAGAATGTTTAATGAAGATGATGACTGGAGTGACGAACAAGACGCTCAGACGCAAAACACAACTGTGCTCCGAAGCACTAAGAAGGCGAACAGCAGCACGAATGTCAAGTCCAATGTGGTTGGGAAGAAGAGCCTGATGCGGACCCTGCAGACACTGGGGTCAGTACCAGAGTGGAAGAATGACGATCATCAGCAGGACAGCGACAGTGAGGCCGATGTGGCCCCAACACACAGCAAGAGAAAGAAGAAAAAGAGGAAGAAGCGAAAGAAAGTTGAGACAACAGGAGAGCAGCAAGAGAGTGGAGACTTGGACCAGACCACTAATGGGCAGGCACTTGCATCAAAAAAGAGGAAGAAAGACGACACATTTGTGGCGGCTCTGAAGTTAAAAACCTCATCCGTGAAGAAAACATCAGATAACGATATTATCAAATCCAAACCAGAGAACATGGAGGGACTGAACAGACAACAGTGGAAAAACAAAATGAAGAACAAGAGGAAATGTACAAATAAATACAGTCAGAATGAGCCAGAGAGGAAAATCAATAAAGCTGAATCTGCGGAGCAACATGAGCCAAAAGAGGAAGTCAAAATAGATTCATATAGcaacaacaacaacaacaGTCAGACCCCAGCCAAGAAAAAGCAAAGTAAACCACAGAAAATAAAAAAGATCAAAGTGGACACTGACGTATCTGTTCCCACAGACACACGGCCCCTCAGAGAGGAAAAGCAGCGAATTGTTCTCAAAGTTGGAAAAGACACAACTGAAAGTTCTGCAAAACAGGAAGCAGCTGTACCGCGGGTGGAGAACGGAGGTGAGCAGCACCAGTCGCCTTTGAAAAGACCCAAACCcGAGATGAGCAGAGAACAGATTCTGAAAAGAGAGAAGCTACGGAAATTGCTCCACCGACGGGAACCAGTCCAACGGGAGAGTCCCGCTGAGACGGAAGACACGCCTTTGAGCCCAGAGGAGGAGCTGAAACCGGACCGCTCCGCCTCCCTGAGGTCCCGCATGGAGCAGCGGCTGGAGTCGGCGCGTTTTCGGTACATtAATGAAGTTTTGTACAGCACGTCCAGCGGCGAGGCGAAGCGCATGTTCAAACAGGATCCGCAGGCCTTCgaGATCTACCACAGAGGATACACGGCGCAGGTTCAGCGGTGGCCCGCCAACCCAGTGGATGCCATCATCTCTTACATCCAACAGAAACCTCCCTCTCTGGTGGTTGCAGACTTTGGTTGTGGCGACTGTAAGATCGCGCGCAGCGTGAAGAACAAAGTGCACAGCTTCGACCTGGCAGCTGCCTGCAAAGATGTCACGATCTGTGACATGGCCAACGTCCCGCTTCGTGACGGCTGTGTGGACGTCGCCGTGTTCTGCCTcTCTCTCATGGGAACCAACCTGGCCGATTTTCTAGCAGAGGCCAACCGTGTGTTAAAGAAGGGGGGTGTCCTGAAGATAGCGGAAGTGGCGAGCAGGTTCGAGAATGTGCGGAACTTTATCAGCGCGCTGGCAGGACTGGGATTTAAGcTGGTGAACCAGGACACCAAGAGCACTCATTTCTACTCCTTTGAATTaCTGAAGACGGGAGACACTCCAGAAAATATCAAGAAATTTGGACTTCAGTTGAGGCCCTGCCTCTACAAGAAAAGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05148	Methyltransf_8	Hypothetical methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007823	Family	Ribosomal RNA processing protein 8	Interproscan
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR042036	Homologous_superfamily	Ribosomal RNA-processing protein 8, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12787	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000183	Biological Process	rDNA heterochromatin formation	Interproscan
GO:0005677	Cellular Component	chromatin silencing complex	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0008168	Molecular Function	methyltransferase activity	Interproscan
GO:0033553	Cellular Component	rDNA heterochromatin	Interproscan
GO:0035064	Molecular Function	methylated histone binding	Interproscan
GO:0042149	Biological Process	cellular response to glucose starvation	Interproscan
GO:0046015	Biological Process	regulation of transcription by glucose	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-