Gene detail

Detailed information of HS17367 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17367	RNA BINDING MOTIF RBM PROTEIN -RELATED	chr20	6644462	6649260	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17367

ATGGGAATAGAGGAGGAAACAGACCGGACACTATTCATAAGGAATTTGGATACAAGAGTAACGGAGGAGCTTTTGTTCGAACTGTTTGTTCAGGTACAGTTGTCGCTAAcGGTCAGACGTAGCTAGCGCTAGCTCGCAAgTATGAAGtaAACAGATAGCATTTCATTGCACAGTATGCTTGCTAACACATGTCGGAGTTAAAGTGGACACCATCATaTACACGTATTAGCTGGTCGGCTCTCTTACAATAGCTGCAGACATTTcatagtgccactatgTGTTAGAGAGAAGTTTAAGTGATTGTTCTTCAAAAGAGTTAGCTTAGCTTTAGCTAGTCGTTGTCCGTGTAACGTTAGCTACCGTGTGTGTGTGTttTTTTTCTGCAGGCGGGACCTCTCATCAAAACTAAAATTCCAAAAGACCCAGATGGGAAACAGAAAACATTTGGTTTTGCCGTTTACAAGAACGAAGTGTCTGTACCaTACGCCATGCAGCTAATCGACGGGACATCGCTGTACGGGAGAACCATTCACGTGCAGTTCCGATCAGGTACGTTCAACAGGTGTGCACTCTTGAGACGCtTTagcgttgctcGGAACATATCGGCGGTATTTGCACTGCAGGACGTTTCTCAACAAGATAACTAACTTTATTTCAGACACATGGGTTCGTACGAAACcACAAATGCcTACAATACAcagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatggtcatttccaggcctggaaaagtcatggaaaaaaacttaaatcataaaagttttgaaaaagtcatggaaatgtgttatcatatgtttattcacgcagagtttgaaatgactatgtttttttaaagaaagatgctcaaaatataagccggcgtactctctcaatacgcaacattttctaaattgttcatgtttataccgagatttcagtttggtcatggaaatttggtttaaagtcctggaaatccattggtcaaaatgtgtaagaaccctgAATACACATGcATAGTCATCGCAGTTGCAAATTCAACAGTGGTTAAAAGACACTTGATCCAATGTTTCACAACCCCTGTTGTGGAGTTTTTTAATGACCTTCTGGGTAAATTCAGAAAATAAAAATGGTTACTTCTGTGAACCAAATGTATGTTAATATaCAAAGGGTCCAAAGTGGGGCTGATATAGAATAGATAAACGTTAATGTGTCACGACGTATTATTTTATTTTCAAGTAACGTTCAAAGCAGAGTTTATACTTAATAATAAAAAAAGGAGCACTTCTTTTCTTAGGGTGAACTCAAGCTGCTAAGACAGTTCAGTTGGACAAGAATATGCATtAAGTTTGTTGCTTGAACAGTTTGTATCAATTTTGATTTTAAATTAAATTtGCAATTAGCATTGTGTAGCTTGTCAGAATCTTTTCGTGGTGAGCTtGCTTTTAGTAATATATAATTAATAATATGAGTTAATGAATTGCCCTCACAAAGGaCTATCATCCCTGTTAtAATCAACTAAAGTCCCAGAAGCACACTTGTGTGTTTACCTGtgTCTCTACGTGACCCTGTTGACATTCTGTCTGAAAACTGCACCGTTTGCATATAAAGGACAACGTGTCATGCaTCAATTCTCGCTGAATCAATACCAAACAGCGCTTTTAGTTTTTTAGCATATAAATTCAAACCAAAGATTGATTTGACATGTTTTCATGCCTTGTGAAAATAAAATGTAAGGGGACTAAAAGAAAAGAAAACAATTATCGTACTTGCACAGTATGTTGTAGTTATTTTCCAACTGGAATTGATTTGCCCTTCACCAAGAGACTTTTATTCTGTTTGCCTCATCACAGGTAGCAGTCACAGCAGCAGTCCAGGGAACTCGCAGAATACAAATCCTGCAAATATCCCAAATCCGCATGGCCAGAGGTAAGTCTCATTGACAGTTTGTCCAGCAGTGGCAGAAACTAAATCTGGTTACCTGCACTCTCCATCGCATTACAGCAGCTACTGGCTTAGCAGATGATGCTCTCATGGTGATTCCACAGCTGCATCTTAAAATGTGCCTCTAGCCCTGATTTTAAGTTACGCTAGCGACCTGTTGCTCATCAAAGAGAGAGTCCACTTTGTACATTTCATCTCAACTTTGACCTGCCAATTGGGAGTTTCTTCATGCGGTATCTCATGGAGTCAAATGCATCTATGTGGAGCTGTGGTGGCAACCGCATAACCACAGCACTGTCCGTTTCAAGCTATCTGAAGGGATGCGATGAACAGCTGCAGCAGCTGAACGCCTTTACTTTCTTTTTTTCCCCTCTATTTTGAACTACAGCGTACGGTTAATTGTGTGATCATAtTAAATGCATTTAAAGAAAAGGTtTttGAGGCAAGTCCCAGTGCATATAATGTAATATGTTACTATATTAGCAAATGGATGCCCAATGTTTGGTCTGTAAATGGAGCCTTCTAGTTGCCTCgATTGTCATTAGGTTATATTTGTTTGACAAATGGCTCTGCTGTAGATTTGTAATTGGTTCCAGCTTTTCAGTGTGTTGAATGTGTTCCCAAAGATGGATATACCTTATTGAATATGACTTGGACATGCATGTTTTTCATACTCTTGGCAGTtACCTCTGCTCTGGCCAAAGATGTGGCTTTAAATGGGATTGTTCTGGTCTGTATTTACTTGTATAGGAGACTTGTTGTGCAATCCCTTCCAGGTTTTATGCCAAATTACATGCAGCAGTGCCTGTTAGGGCAATTGCTGGGAAGAGTATTGCCCCAAGACCAGTATATATCTCTGCAGTATATatttagtttactttaatttaattgaaAGTGTAAGGAAGTTTCAAAATAACTGATCgTTCTTGTTCTAATACACATTAAAACTGAGATAACAAATTGTAAACAATGATGTAACTGACTGCCTACCACATGCTGTTCTGGATTCCATTTCAGTTTGTAATTAATGCCGATTTAACAACcTAAAAGATAGCAGGCTGACAGAAACACCAGGGGTGTGCATCACACAGAtaGGTTAACTTTgAGCtATCACTCACCTGGCTTACTCTTCACCGGGGGCGATCAGCGTGGCATCCTttgctCCGTGGTAGAGGGGTTTCCCTCCgGTCAGCTCGAGTTTCATTACAATGCATTAATATTGGTAATCAATATATTCTTCAACACAAACTTACTTAAAAAAACGAAACGAACTCCTTCAACTTAAAAGAAAAGTTTTGGCTGCACTTTGCGATCTTTATCTCCACAAAAATAAGGAGTTaAAAAAAAAATGTTTTGcAGGAACATTTCCTCAAGATAAAGATAACTTCTGCAATCTTGTTTCGATAACCTTCTCAAAGCGTGTCTGTTGGAAACAAACCAAAGCAGACGGCTGTGACTGTCGAGTTGATTTTAACTGCCATTGATGCATCAAaGTCGGGCACAGGTGCAAACAATCCACTGATTGCGACACTCCTTTCGGGTTAATCCAGTTCCTCTGAAATGGAgGCGTCAGACTCGGCTTTGTGTCGGTGCTGATGCACTTCCACATCATCCATTCCATGTCTTTCTTTACCGGTGACAAATAATTTTGTAGTACATCTAATAAAACTATTATCTCGAGCATATTCCCAGTTGATGGTAACGTCGCTGACGTGGTAGGATAGATACATTGTGTGTCAATAAATTATGTGCTGGACTAGATACTGACTGCTATTGGCTTGAAGTCTTAGTTTGCCTAAGCAGGATCTTGTTTACATCATGCTTCATCGAGGGGTTGGACTCTGCTCGAGATACTCGGAAATGTTTGTCCATCCTTATCACGGTTGACTATTGTCCGGTTAGATCACACATATATTCAAAACGCTGTGAAACCACTGAAGCATGGGGCTTGTCTTAACGAATTCTCCCTGAGGCGATCCTCTAAAATGTTGAAACACAGGACCTATCCTAATGCCTAAGAGGCAGAATAAGGTCAAAGCACGaGTGAAAACATCCCCCAAATAtAGATTATTCTTCTCCTCAAATTTGACATGGATTTGTTGGTAGTCAATGTGTTGAATGTGCACCACCCGACACTATATTGTTCTTTTCCCTTTTGAGATGAAATGCGTGACAGTGGTTTGTTTAACTCTTCCAGGACCCCAGGACAGTTCAGTTCTCCTCCTCCCACCCTGATGCAGAGGTCTTTTTCATCTCCCGATAATCTGCAGAAGCATGTCATGGTAATCTTTTAAAATGTTTTACCTATGTTTATTATAATTCGTAGTGCTTATTCAGACCTgCTCTGTGCGTGTTTTAGCTGAAATGTGCCAGTGTTGCGAATATATACATTTCGACAATGTCATTTGACAGCAATAGAAACAACtTTGTTCTCAACTAACCATTTGACACGCAGGTCACGTTAACTGTTCTTTTCATGAATCCGCAGATGAACAACATGATGTGGCTCCACATGCCGCAGCTCGAGCAGGCGAACGACGGCTTCTCCAAGCCTCTGCAGAGGCAGCAACCCACAGGGGGGAACTCTGGCGGAGGAGGCTCGAGGCAACACGACGGCGCCCCCTACCGGCAGTCGAACAGCGGTGGCAGGAACCAGCGCTACCCAGAAGAGCCAGCTCCTGGCCGCCAAGGCCGGgacagttaccaccatcagaacgacagttatcaccatcagaacgacagGAGTGGCAACCGTCACCACGGCAACAGAGGTGGCAACAGACACCACGACGATAAGGGAGGCAACCGTGACCACCAAGATAATAGGTGGCGGCGGTACATGGGAATAGAGGAGGAAACAGACCGGACACTATTCATAAGGAATTTGGATACAAGAGTAACGGAGGAGCTTTTGTTCGAACTGTTTGTTCAGCAGGCGGGACCTCTCATCAAAACTAAAATTCCAAAAGACCCAGATGGGAAACAGAAAACATTTGGTTTTGCCGTTTACAAGAACGAAGTGTCTGTACCaTACGCCATGCAGCTAATCGACGGGACATCGCTGTACGGGAGAACCATTCACGTGCAGTTCCGATCAGGTAGCAGTCACAGCAGCAGTCCAGGGAACTCGCAGAATACAAATCCTGCAAATATCCCAAATCCGCATGGCCAGAGGACCCCAGGACAGTTCAGTTCTCCTCCTCCCACCCTGATGCAGAGGTCTTTTTCATCTCCCGATAATCTGCAGAAGCATGTCATGATGAACAACATGATGTGGCTCCACATGCCGCAGCTCGAGCAGGCGAACGACGGCTTCTCCAAGCCTCTGCAGAGGCAGCAACCCACAGGGGGGAACTCTGGCGGAGGAGGCTCGAGGCAACACGACGGCGCCCCCTACCGGCAGTCGAACAGCGGTGGCAGGAACCAGCGCTACCCAGAAGAGCCAGCTCCTGGCCGCCAAGGCCGGgacagttaccaccatcagaacgacagttatcaccatcagaacgacagGAGTGGCAACCGTCACCACGGCAACAGAGGTGGCAACAGACACCACGACGATAAGGGAGGCAACCGTGACCACCAAGATAATAGGTGGCGGCGGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052285	Family	Nuclear exosome targeting complex subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13798	RNA BINDING MOTIF RBM PROTEIN -RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-