Gene detail

Detailed information of HS17364 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17364	SOMATOTROPIN,PROLACTIN	chr20	6166138	6170679	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17364

ATGCAGCaGGGTGTGTGGGCTGTGATGCTCTGGCATaACCTCCTCGCATCGAGCATCCCTCTAGACTGCAGGGAAGAGCAGGGTATCCTCTCCCGCTGCCCTTCCATCTCCCAAGAGAAACTTCTAGACCGAGTCATCCAGCACGCTGAGCTCATCTACCGTGTCTCGAAAGAATCGTGCTCTTTGTATGTGAGTAACACCGTCCGCTACCCTCAAACGAACCTCCTGTGGTGAATGGAGGGAATCATATTCGTACATTCAGCCATGAAGGCATATATTtagattagattagattagatattactttattcatccccagggggaaagatattgaagcagcagcaaacatgtttacaatatatacaaaacaaaacaataaaatagcagggcgtattacatttaagaatttaaataataaaggaaatagaaaaatctaataaatatagtgtagtgtgtgtgtgtataGCCTCAGGAGAAACTGAATCACTCTTCACACATGAGCATCACATGAGAACATGTTTTCATTGAGCTTAAAACGAGAAGATTCAACTGAAACATAATCAAAGAAAGtacatgatattcagattcaacatctaatttaatttaatttagctgacacttttatcccaagcgacttacaatcataaacctgtctatatgggcagcaattcagggtgaagtgtcttgctTTTGGCCTAATTTTTGGGAATTTGTAATCTGCATTTTTTTTAAAGCAGTAGGGAAAACGCCACAGTGACAACAATGTCGATTTTTGCATGTGAGAAGCTGAATATTTATTTTTAGATATAACAACAACAAAAAAGAGGTGATGGAATTATGTTGTTTTCTCTCATGTCAACTCTACAAAATTAATAAAAAATACAATGCACAGCTGTTGTAATTCCCGAGCTGCGTTATTGTGTATCAAAAATGGCCAAATCTAATTTTTCCCACAATCCGCCGGACCCAAAAAGCTCTGACACTTCCCTTTAGACACTCTTGTGTTATTTGCTTTTGACTCTGACATGATCATCGCCTCGCTGCCGGGCTTCAAAGTAATCTTCCATCTCTCCTCTGAGCCAAAGATGTTTTATTGAAGAAGCAGGCCCACGGTGGAGTCACACGGATGTGATAATGATACACCGCCGCAGCCAGAGCACAGGGTTTTTTTTTGCCGCCTGTTGAATCCCCCTTCACTCGGTGGCTCGGGATCCAAAGTGCTCTTTGAAATGGGATGATGTAGGATGTGTTACTGAGGAGACGCTGCGTGCGGTCCTCCAGATGAGAACACGCCGCCGAAAAACAAAATGAATCTCATCTGTGTCCCCGGTGGCCGAGATCGGTGAAGCGGGTGTCATTGTTTCTCTGTCTTTTTGAGTGTCGCTGTGTAACTGTGAGAAAGGAAGGTTTTCAAAACAATTCAAGAAATCAGCTAAAGCATTGTTTTTTTAATCATTTAAACATACTGCTTGTAAATTGAATATGGAGAGTAAACTAAAGCATAACCTTAATGAGGGGTGAGGATAAATGGGTCAGTATTCACTGTAATATAAATATGTATGCTGTGCACTTTATTGGTGTGTGTGTGTATTTTTATGTTTTTAaattcaattcagtttattttatatcgcccaatatcagaaattactaatttgcctcagcgggatttacaatcggtacacatacgacatcatctgacctttgacctctcacatcggatgaggaaaaaaaatatatatagaggaaaaaaacatgtaaaaaagggaagaaGAcattttttattgaatgcttatcatttggctgtatttagtttgattgtttggtccttccctctctcctcattgggtcctactcttggagggtagatgtataagtataaacatgtgggaggggatgggtgggaatgtttggcaggtgagtatgtggatatggatggatttggatgtgtgctgattttattttgttgtatatatatatattctttttcttttcttttttctcgatgtcaagggttaatctgtttgtggaaaatgcaaaataaaaagtaaaaaaataataataaaagggaagaaactattcatgagagcaacatcctctccaggatggacagaagaatagatgtcatgtgtacagaaggaagcatgacagtgttataacatattcaatgagtatgacagtgttataacatattcaatgagtatgacagAGTGATTATTCTACTTGCTTGTTTGGTTTGCAGGAGGTAATGTTCATCCCGCTGCCTTTGCAGTTCCAGAGGAACCGAGCTGGCTCCGCGTGCATCACCAAAACCTTACCCGTCCCCAGCTCCAAAAATGAAATCCAACAGATATCTGTGAGTACATGGCGATGCTGATGGCGACAGAATCTTTTTTTCAATTCCAATTTGAAGGGCGTTGATCTTTTTTTCCGTTCACAATGACAGTCGGGGAGTGTGTGCAGTTCCTCTTCTATTTTTTTTGAGGGGGGGAATTTATGCCATTGCGTCTGTATTTGCGAGGCATGTTTCAGAGCAAAGGAAATGCAAGTAAAGGTGGTTGTATGTGTTTATGGATTTGTGTTGTGTGTCTGTTTGCATCCGAGTGGAGTCGTAATCATTTCtGTGCATTTGCGTTTGCAGCTGTCTGCTATATTAATGCACACACTGCTCTGCTCACAAATCACTGCGAAGCTGCAGAGCCCAAGCTTCTTCTTCTtTTTTAAACGATGCTTAGCGTGcAAGTGTACCTCCCCTTCTTCTAAACTCCCCTCCCCCCCcGTCCGCTACCGAATGATTAGTCGTTTGCACTAATTACCATGAAtGGTCCTTCAATCTTTtAAATGTACTCGCCTGtACAACATTTCATTTCTCCTTCGCCCGTGCCCACCGAGGTTTAGGAAGCCGTCCGACGTAGGCCgCGACCTTTGAGGCCAAACGTCAGCTTCATCATCAGTGGCGTGGCAACTGGATCGAACCACTTAGCGAAGGGCTGATGTGAACCGTAATCCGGCAAGTTCCAcGATCATCCTCCTCCACGTAACAAAGGCCAAGTGTATATGACGAAGACGACATCCGCAAGGTTCTAAAGTGaAGCCgAATTGAAAACGATGTCATCGGCATAATGTTGAATGTGATCTTTGAAACCGCGTGTCCTGCATATACTGCTAATAATTCATCCTCTGCCCTTTCTGCTGAAATATTGCCCGTTCTGCGGTTTAATGACCATTTGTCTAGTGGTCATTTGCACTTGCTTTTGGAATCTGGAGAATTTAAGCCGACTTAACTGCTTCACCCATGACATTTCAGCCCACTGTTGTTGCTGAATGTTTTGTCGCTGTCGGGGCaCTCGATCAAAAGCCAtGCTTTTTATTGAGGTCGTCTGTCTTTTTTTATCACTTCTGTTCATAACTATCTTACAATAATTGTGAAGGGCACATCGCTGCCATTAATTAAAGACATAAATGTTCCCACAGAGACACGAATaGAGAAGTCACTCCTGCTGCCGCTCTGTcACGTCTTGTaGTGGATTGtTCCTCATCGGCTTTGTGTGTAAACACgACGTTATGTTTGtTGTACTGTTTGAATTTGAATTTCGCGAATAATTCATTCAATTCTTTGTATTCAAACGTCACCTGCTGTGTGCCCCCCCCCCCCGCAGGACAAATGGCTGCTCCACTCGGTGCTGATGCTGGTCCAGTCCTGGATCGAGCCTCTGGACTACCTGCAGACCTCGCTGGATCGCTACGACGACAcTCCCGAAACGCTCCTCAACAAGACCAAGTGGGTGTCTGAGAAACTGATCAGTCTGGAGCAAGGGGTGGTGGTCCTCATCAGGAAGGTGGGTCATATCCCGTGTTTTATTACCCACACATGAACCCACACTAGTTGAATTAGAATAATTGACTGGACACTAGAAACTGACTCCTCCCACCCGACTTTACTTTGAAAACTAAACTAAACACACCGTCTATGCCTGTTTTGTTGCCGTTAATCcaggggtgtcaaactcatgttccccgtgggccaaatcggcatcatggccgccctcttaaagggccgggaacactttataaactcctcgaacatgttgttaaataactctctgtgcatttgattattgtttatttgagtgtagaaatattgtacatcagaaaatgtctctaatatttcaacatgaatccatttaatctaaaaccttcaaaataaaagcacgggatatttttctccaatttctttaagaaaaggtttctttaaagccgccaggggccgcataaagcgatgcgacaggccggattcggcccgcgggccttgtgtttcacacctgtgGGTTAATCCATCCGTCGTGTTTTCCGAATGTCTCCATCCAGATGTTGGACGAGGGCATGTTGACCATCAACcACAGCGAGCAAGGCCTCCTCCCGAATGACGTGCAGCCGCAGATGCTGGAGTCGGTGATGtGGGACTACGCCTTACTCAGCTGCTTCAAGAAAGACGCCCACAAGATGGAAACTTTCCTCAAGCTCCTCAAGTGTCGACAAACCGACATGCAGCaGGGTGTGTGGGCTGTGATGCTCTGGCATaACCTCCTCGCATCGAGCATCCCTCTAGACTGCAGGGAAGAGCAGGGTATCCTCTCCCGCTGCCCTTCCATCTCCCAAGAGAAACTTCTAGACCGAGTCATCCAGCACGCTGAGCTCATCTACCGTGTCTCGAAAGAATCGTGCTCTTTGTATGAGGTAATGTTCATCCCGCTGCCTTTGCAGTTCCAGAGGAACCGAGCTGGCTCCGCGTGCATCACCAAAACCTTACCCGTCCCCAGCTCCAAAAATGAAATCCAACAGATATCTGACAAATGGCTGCTCCACTCGGTGCTGATGCTGGTCCAGTCCTGGATCGAGCCTCTGGACTACCTGCAGACCTCGCTGGATCGCTACGACGACAcTCCCGAAACGCTCCTCAACAAGACCAAGTGGGTGTCTGAGAAACTGATCAGTCTGGAGCAAGGGGTGGTGGTCCTCATCAGGAAGATGTTGGACGAGGGCATGTTGACCATCAACcACAGCGAGCAAGGCCTCCTCCCGAATGACGTGCAGCCGCAGATGCTGGAGTCGGTGATGtGGGACTACGCCTTACTCAGCTGCTTCAAGAAAGACGCCCACAAGATGGAAACTTTCCTCAAGCTCCTCAAGTGTCGACAAACCGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00103	Hormone_1	Somatotropin hormone family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001400	Family	Somatotropin/prolactin	Interproscan
IPR009079	Homologous_superfamily	Four-helical cytokine-like, core	Interproscan
IPR018116	Conserved_site	Somatotropin hormone, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11417	SOMATOTROPIN,PROLACTIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005131	Molecular Function	growth hormone receptor binding	Interproscan
GO:0005179	Molecular Function	hormone activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0031667	Biological Process	response to nutrient levels	Interproscan
GO:0042531	Biological Process	positive regulation of tyrosine phosphorylation of STAT protein	Interproscan
GO:0045927	Biological Process	positive regulation of growth	Interproscan
GO:0046427	Biological Process	positive regulation of receptor signaling pathway via JAK-STAT	Interproscan
GO:0048513	Biological Process	animal organ development	Interproscan
GO:0060396	Biological Process	growth hormone receptor signaling pathway	Interproscan
GO:0070186	Molecular Function	growth hormone activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-