Gene detail

Detailed information of HS17099 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17099	NF-KAPPA-B INHIBITOR ALPHA	chr19	27856957	27864766	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17099

CTGCTGGCGGCGCAACGGCAGCTGATGGCGGCGCAGGACGAGGACGGAGACACGTCAGTCAGACCCTCGTCTTCGCTCTCGAGGACGCACCTTCAGCGCTCTGACCGTCCTCCTCTCTCCTCCTAGGGGCCTCCACCTGGCAGTCCTCCACAGCCAGCAGGAGGCGCTGAAGAGTCTGACGCAGGTGGTCTCCGCTCTGCCCGGAGAGGAGGTGCTCAACATGAGAAACCACCTCTACCAGGTACTcgcctcctaaagctccgccccctaaagctccgccccctGCAGCGCCGAGCAGGAAATCAGCATTTCTTCTACCCGCGTTGTGTTCTTTTGTTCAGCGTAGTTTCCTAGCAGCGAGGATGCATCCTACTTCCTACTCCAAGGGCAAGAAGAAAAAACGATAGATGAACCTCTCTGTTTGAGAGGGAGGAGGAGCACTTAGGAAGCTAGGAGCCAAGATGTTTCCAGTTTAACAACAAGGGAACGACCTTGCTGAGGAGAGGGGTTGCTTCCTTGTCTgggtgtaagaaaggcgtctttctgttacaggagataagaaggaagcaagtgagcgagggtggacaaaaggcagctttctgttaagggagataagaaggaaacgagtgagAGAAGGTGCAAGAGACCTACTTAGGAAGCAGGAGGcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggattgtagcaggcctgaggccgccacccgtgggtttccccccccagcaccaaggatccgccagacagcacgagggtttgttcaacgacatatttattggcacacacacgacaccgagcagaccgcaaaacacgtgcctctgctcacctcccttctccactctcgagtgggagcttttataagggtggcctcggctgctgagtgattgccaatcaccagcagccgaggccaaatcagacacagctgccacagggatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagggatcaatgaagtgtactagttagagatcaatgaagtttactagttagggatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggattaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactagttagggatcaatgaagtgtactatttagggattaatgaagtgttctagttagggatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgacatgtactagttagggatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgacgtgtactagttagggatcaatgaagtgtactagttagggattaatgaagtgttctagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagagatcaatgacgtgtactagttaggaatcaatgaagtgtactagttagagatcaatgaagtgtactagttagggatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttagagatcaatgaagtgtactagttaggaatcaaggaagCGTCCTACTATGAGAGGAAGCATGAATAAAGCTCCTCCTGCATGTATCCCAGACTCCTTTGCACCTGGCCGTGATCACCCAGCAGAGGGAGGCGGTGGAAGCGCTGCTATTGGCCGGCGCCGACCCGACTCTGACGGACCGCCACGGCAACACGGCGCTCCACCTGGCGTCCCGGCTGGAaggaggaggaggaggaggaggaggGATAGTCCAGTTTCTACTGCAGCACAGAGAGATGAGTGAGCTGCTGGACcacaccaacacagcaggtacacacacacacacacaccaacacagcagctacacacacacacaccaacacagcagctacacacacacacacaccaacacagcagctacacacacacacacacacacacaccaacacagcagctacacacacacacaccaacacagcaggtacacacacacacacaccaacacagcagctacacacacacacaGAAAGCGTGTACAAAACGTCCGTGGCGTCTCCGCAGGTCTGTGTGCGATCCACCTGGCCGTCCTGGCCAATCAGCTGTCTTCTCTCAGGGAGCTGCTGGTGGGCGGGGCTAACGTGGAGGCTCAGGAGCGCGGCTGTGGACGCACCGCGCTCCACCTCGCCACCGAGAGGGACAACGTGTCGCTGGCCGGCTGCCTGCTGCTGGAGGTACAGGCACTGGTTCCTCtggtctcactggtcaggtggtctccctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctctctggtcaggtggtctctctggtcaggtggtctcactggtcaggtggtctctctggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctctctggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctctctggtcaggtggttccactggtcaggtggtctccctggtcaggtggtctccctggtcaggtggtctccctggtcacgtggttccactggtcaggtggttccactggtcaggtggtctcactggtcaggtggtctccctggtcaggtggtctccctggtcacgtggtctcactggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctcactggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggttccactggtcaggtggttccactggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctccctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctccctggtcaggtggtctccctggtcacgtggttccactggtcaggtggttccactggtcaggtggtctcactggtcacgtggttccactggtcaggtggtctcactggtcacgtggttccactggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctcactggtcacgtggttccactggtcaggtggtctctctggtcaggtggtctccctggtcacgtggttccactggtcaggtggtctctctggtcaggtggtctctggtcaggtggtctccctggtcaggtggtctctctggtcaggtggtctccctggtcaggtggtctcAGGTGGTTCCCCAGTAAGATCTGACTGATGCCTCCCGTCTCCAGGGAAACGCTCAGGTGGACTGCTTCACCTTCAACGGCTCCACCCCCCTCCACATCGCCGCAGGCCGAGGCTCCGTCAAGCTGACGGCTCTCCTGATGGCTGCAGGTAAACACACACCTGGAGATGCTAACCTTAGCTTAGCATAGAGACCGTATTGTTATCTGTCTCACTGTTGTTGCAGTGAGACAGACACTGCAGATTgtgggttggttagttgtttggttggttagttagttatggttagttagttggtaggttggttgattagttagttggttggttatggttagttggttagtcggttatggttagttaattagttggtttgttagttatttagttggctatggttagttggttatggctagttgattatggttagttggttatggttagttggttatggctagctggttggttagttggttagttagttgttgttgttTAACCAACAGAGCGTGTGTGTGTTTCAGGAGCGAACCCTCAGAAGGAGAACTTTGAGCCACTCTTCTTCAGggaggaggactgtgatgaagagagggaggatgaggatgaagatgaAGGCTACATCCCAGGAACCACTCCTCTCAACATGGCCGCCACCACTCAGGTACAGCTGTAACTAAAGAGACACGGTTTTCAAAATAAGAGCCTAACCTAAACAGTTTAACAGGTTCAACAGCAGATGAACTGCAGTGAtctctctctctctctctctctctctatatatatatatatatattagggctgtcaatcgattaaaaaaaattaactaattaatcgcatattttgaaattcattaatcgcgattaatcgcaattaaaagttaaaagttcattctttttaaagaccaaacttcacacagagctgtgttttcaaagaggctcctacctataaagtgccagcgaggtatttaatattgtggatgataaattgtttcttcagtgaaacatccagattagtaaaaaaaatgaagtatattgagaccccattggtcctgtcatctttaacactgaacagcagcagaaccagtggccttggtaactgactgacattcacatatgtcacgttcaccctctggaggctgggggcattttatacattttacaaaaaaatgtaaattcacctttttaaggcgtttgcatatgacacacccccacgtgttatacatcaaacattccagaacaatctcagctctattcaatgaggctcattgtcctcgcgccgtgttctctggttctctgactgacaggctgctaatgagcctcacctgtgaggtgggaggtcctttgtgatttactgagtgttcattggttgtttttttcccaaaatgttaacagacaaacggattgaccaatcacggtgaaggtttcgtgtgacgagttctttccgcgccgcgtcccccgacacgtcgcccctccgttcctctgtgtatcagagggggagacgggaggaaggaggagcaggaggaaacccgactgattcatccacgagtttaaactcatttctgctccttattttcgcggagaaataattgttttaaaaacggaaacagtgttaaaccgcaatgccgcggtttgacactcggtttgagtgtaaaaacttcaatgaacaccggaagtaaacaaagttgcgttaattgcgttaaaatattttagtgcgttaacacggccaaattaatcgcatagattaacgcgttaacgctgacagccctaatatatatacatatgtatatatatatatatgtatatatatataatgtaatataatataatatatataccttttttatatatttccacaacaaaacaaAAAAatatatatattattttatatatattttatttaatAAAAATAAAAAATCTATTATtattttatataaataaatttaatataaatatattatatatatatatatatataatatatatatatttaataaattttatataaattgaaaacatgcagtgcatttttatgacggcgcgtgtgtgtgtgtgtttgtgtgtttgcaggtgtTGGAGCTTCTGAATGGAAAAGAATATGAAACAAAATGTCCACAAAAAGCCTTCACCCCTTCTCAAGGTGAGTCTCCAATCTGAGGCCATTTAATATTTACACACTAACGTGTAGTTAAAACTTTTGTTTTTAAAGTTTCATTGAATGACGTTTAATCAACGGGGTCATTAAAGTGTATTTGTATCTGTGCATGAAGAAATAGAGACGTACACACAAATGTACTAAACAGGGTAATTATACATAATGACAGTGAGACATCAACAGAAACATATAGTTATAATGACTCTATAACAtattattattattattcttaattatAAATCCAACTTAATGCCATGGCAATTAATGAAAACAGTAACTATTAAAAAAATATGTAAATTCTTGAAAACATATATTCTGATCATTATGTGaataaagaaatcgaaaaaaattaaatagataatattaaataaatatttagataattacgtgattgaataaataacaaaaatataaaacgtaaacaatttaaaaaatcatcgaataaatacataaaatataaaacattgattacataataaaaatataaagcatcataaggtgaataataaaatagaaaatcctgattaaataaataatatatacatttaattaattaataaaAATAACATTGAACATGTGTGTAATAATGTCCACAAGGAGGGAAAGCTCAACTAAAGTTGTGTGACCTCTAACCTTTCTTCTTAAATTtggggagggagtgaagtgagtcagctgttttcaagtgtgtgtgtgtctgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtaggcgacTTGGCGATCCTGGACCTGGAGGTGAAGCAGCAGGTGTGTCGCGCTCTGGAGAGTGAAGGATGCTGGGAAAACCTGGCTCACAGTCTGGGCCTCGGGATCCTCAACACGGCCTTCAGGCTGAGCCCCTCCCCCGCCAAGACACTGCTGGACAGCTACGAGGTAacacacacacacacacaTTTGATATGTCACATGAGAGATGAGCTCTTAAGAATTGTTGAGAAAGTTTAAGATATTGAAAATAAAGAAATCCAACTTTGAACTGTTTTATTTTAATGTTTTTCCTCATGTTGTCTTTAAATGCCTTTGTTTAGATTATATTTCAGTTTAAAACTCCTCATACGATTTATTTTTCGCTTCCTCTCTTAATCAATTTGGTTTTATTTGATCTAACTGGATGAATTGATTGAGTTTGACCTCTGACTTCCTGCAGGTTTCAGGCGGGACGGTCAGGGACCTGCTGGCTGGTCTCAGGTCAGTCGGCGAGTGCAGAGGGCTGAGCGTCCTGGAGGAGGCGCTGCGTCGCCGCCATgaggatgaggatgaggaggaggaggaggaggaggaggaggagCCGAGCGGTGAGCCGACCACACGAGGCGCTCGCCGTCCAGGTGTTAGGGTTCAAACCGGCGACTCACTCAGGCGTGATTCTCCCTCCGCAGGCGAGTCTCTGGCTCGGGATCCGAAGGCGGACCCTCGGGTGGACAGcggcgtggagctctcaacggcgCTGCTGGCGGCGCAACGGCAGCTGATGGCGGCGCAGGACGAGGACGGAGACACGGGCCTCCACCTGGCAGTCCTCCACAGCCAGCAGGAGGCGCTGAAGAGTCTGACGCAGGTGGTCTCCGCTCTGCCCGGAGAGGAGGTGCTCAACATGAGAAACCACCTCTACCAGACTCCTTTGCACCTGGCCGTGATCACCCAGCAGAGGGAGGCGGTGGAAGCGCTGCTATTGGCCGGCGCCGACCCGACTCTGACGGACCGCCACGGCAACACGGCGCTCCACCTGGCGTCCCGGCTGGAaggaggaggaggaggaggaggaggGATAGTCCAGTTTCTACTGCAGCACAGAGAGATGAGTGAGCTGCTGGACcacaccaacacagcagGTCTGTGTGCGATCCACCTGGCCGTCCTGGCCAATCAGCTGTCTTCTCTCAGGGAGCTGCTGGTGGGCGGGGCTAACGTGGAGGCTCAGGAGCGCGGCTGTGGACGCACCGCGCTCCACCTCGCCACCGAGAGGGACAACGTGTCGCTGGCCGGCTGCCTGCTGCTGGAGGGAAACGCTCAGGTGGACTGCTTCACCTTCAACGGCTCCACCCCCCTCCACATCGCCGCAGGCCGAGGCTCCGTCAAGCTGACGGCTCTCCTGATGGCTGCAGGAGCGAACCCTCAGAAGGAGAACTTTGAGCCACTCTTCTTCAGggaggaggactgtgatgaagagagggaggatgaggatgaagatgaAGGCTACATCCCAGGAACCACTCCTCTCAACATGGCCGCCACCACTCAGgtgtTGGAGCTTCTGAATGGAAAAGAATATGAAACAAAATGTCCACAAAAAGCCTTCACCCCTTCTCAAGgcgacTTGGCGATCCTGGACCTGGAGGTGAAGCAGCAGGTGTGTCGCGCTCTGGAGAGTGAAGGATGCTGGGAAAACCTGGCTCACAGTCTGGGCCTCGGGATCCTCAACACGGCCTTCAGGCTGAGCCCCTCCCCCGCCAAGACACTGCTGGACAGCTACGAGGTTTCAGGCGGGACGGTCAGGGACCTGCTGGCTGGTCTCAGGTCAGTCGGCGAGTGCAGAGGGCTGAGCGTCCTGGAGGAGGCGCTGCGTCGCCGCCATgaggatgaggatgaggaggaggaggaggaggaggaggaggagCCGAGCGGTGAGCCGACCACACGAGGCGCTCGCCGTCCAGGTGTTAGGGTTCAAACCGGCGACTCACTCAGGCGTGATTCTCCCTCCGCAGGCGAGTCTCTGGCTCGGGATCCGAAGGCGGACCCTCGGGTGGACAGcggcgtggagctctcaacggcg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531	Death	Death domain	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488	Domain	Death domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051070	Family	NF-kappa-B Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007253	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356	Biological Process	cellular response to tumor necrosis factor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-