Gene detail

Detailed information of HS17025 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS17025	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	chr19	23789663	23795605	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS17025

GACTGCGAGCAAAGGGTGAGGGCCgTGGAGAGTCTGGATGTGTGCTCCTCCAAGTTCAGCTCCTCCCGCTCCGCGGAGGCGGTGcGGAGCCAAGGCGGCAGGATGCTGCGCGACGTTCTCCTCGACCAGGCCGTCACGCCGGGAGTCGtCAACATCATTAAAAACaAAGCCCTGTTTGACTCGGGcCTCCATCCAGCCGTGAAGGTACGGGGAACAGATGATGATTGTGTTCAGCAGGGGAACATaCACACACACAAAGAAATCAGCATAAAGATGCAACAAAAGAAGAAGTTTAAGCTCTTGTGATTGACTGATGCGTTGCAaTGAGGaggGCGAAGCGGGGAAAAGACAAACAAGCGCATTGCGAGATGGATCTCTATTTTTCGGGAATGTATATCATCTTTATTGAGACTCAAATATTAGACGTATTCTTTTTTTCCtATGAttcttgatggttttttttcttgatggtttttaAAAAAACATTACATGAATATTTATTAGTCATGATCTGGAAATGATGTCAcGTGAAATGCTTCACGAAATATTTTAAGCAGTGTGAGTTTATGTATTTTTTgTTTgTTTTTtGTGAGCCATCCATTTCCTTGAGGAGACACTCTGCGACATGAAGACtggctttcttcaatggctcttttgctttcttttgcgttctttttatttttttttgtcttttttttttttttttttttcttttttttattttttttttttttttcttttctttttttttttttctttacttttacactcttttctactttttttttcgacacctttgttacttttgtttttgatatcgtgaggctgaacaaaacagcggggtcgtgagttttgaagcgcagcaaaagaggacgtgatctgcagctcagctctgcaggagaggactggcagctgcaggtcgggcctcagacgagggcagaagctggagctacggtgaggaggtaccatccctcggtcgcggagaagcggaagggctatgggaggggagaggcgcgggcgggctcgcgaggcggtcacggatgacgagagaacggatgtctctttgatgagctcgtgaggctctgcgctgccgagaggatcttccgcggatgaggcttcagacttcttcactgaggcgtctgagagcgggactatccagcgcgtccggacaggcgcgcgacagaggcgcgctgtgaatgtttagatgacagagcgggggcgtgagaagtgtgcgtggcgggatctgtgatgttgtgaatgagtggtgtgggccgacgcgtgatgtgcggcatccggaccgccattgcgtgaaggttggttgttagcgtcgttgcagcccgtttacgtgcggaagtgcgtgccaccatctgtcgctcgtggccagccatgatctgctgctctcatgcctgctgctctcactgctcatcacactgttcatgctctgcactggtggctgcaaccctttgctcaaaactccatctttccatcaatacaataccacattggacttgctcaaccaaataaaaacacataaccttccatactaataacatgggcaaataaaaactgcctctgcccatgaccaggcctactgactggtcaggcccttcctctggagaagagggctgctgtgactctgctgggggtgctggaggggttctgagggtctcagggctgctaggggctgctctggaggtggtctgtggtggggactggatgtgggatggagacggtgctgactggactgtgtggacatgaccgactctggggaaggaccaccacaccaggatcatcccaatccacggacttccaagtcacaccaacccatcacactccatcaacaccctggataacaggcctctgaaggctgcttaacaacaagctgagctgctctgagggaagaggaagagctgagacagagaagaggagctgaggggagaaaacaggagaggaggaggcaggagcaggagggagagggaacaaggaggaagagggcaactccaaggaaaggagggaacaaaacaaaggactggacaggagtgggagcaggaggatggctgagagggtggagggaggagacagggaggggctttcagagggcctgatgttttcaatggttttctcctccacatcacacctctcaacacaccctccccctccaccccccccctccatcccctccccacccccccctgcacagctgcacatcgagccccctcctcctctgggctcctccaccaccaggtgactctctctgagagagacagtgagaaggaagagagctgactgagagcacagcatcaggggtccagacctcggcaccagccccacccagccccctggcccccccgcctcctgtcccccgccacccagaagcccctcctgtgctgtggtgagggctgggctggtgtctgtggagtccctgtcccctggtccctgtccccccatcacctccctcacctgcctcggcacccctcacctcgagaatgtgatgaggctggtggctggtgatggaggctgctgggcgcaaatcgtggccgcaggtgctggaccctctggaccctctcctgacagcctcacagccgccatcatcacatgtggcgccatcatctctcctactgctcgcagctggatggtctcttctttgactggtgtctctgtgtcctcagtgcattgccacccatccagccactcctgccccccctgctgctgctgctggtgagcggccatgggtgccatctcatctcctggatcactcctctgccactgacacaggttgcacagaatgggcgtgtgtgctgtctgggagtgtgtgttgcggtgatgtgtggaacgaaaaactgttctgtctccttgtcactctgtcctcttcacccttcaccatccagtaccagtaccatctgcatgtccagctctgcaggtgcagtgtgtggagggatcagtgggaggagagggagggagtgtgaggagtggaggagtagtggtagtgtatgagtgtggggcggctgatgggccaagaccagagaagaggtggtggtgggtgagagagaagagatggtggtctcctcccctccctccctcctgggtctcctgggagtgtgtgtgtgggaggaggactggatgcaggaggcgtctcagccgactgaactggccgactgaactggaagctgaaacaacagcaaagctgtgaacaagaactttttgatgaagaaatttcgatccttcaacgtggtgcagggtgtgtgcagatcagtcggtccagtttgtgtgcccacttttgtgttgcttgctacactttgccatgccgggctgggtgacaccagccgccttaaccagcacaagcgtcttaaaaaactggtgctcagcggctgcttgctgccatgccactggtggtgctgggagggtgggggaggaagaactccatattgaatgaccgacaaccccaccacccccaccacctcctacagggacaggagtacagggctctccgtctcctctcgctcctcgctcacacaaggacagatacagagagaacattctgccgctggccagatgaggctctacagatcacctctttgccagatcaccctaaccttcttatattttttgtttttttattcttgtgtgttgctgctactgactcgacaaatttccccttggggattaataaagtatatatctatctatctatctatctatctattacgcaaCTGTTACCAGGGGTTGGGTTtGGCGCCGCTCGCCTATTTTTAGAAAGTATGAGATGAGGGTTCAGAAAATATAGCAAAACATTAATCTAGGGGACTTCTGGCCCCTTCATCTGGGACCTCTCTCCCTCCTCTTCATCAAGCCCCGAGATGTCCTGGAACACGTGtgtgccTGTGTGGCCTCCAAGTCTTGGAAATACACCGACTGTCATTTTCCCCCGTTGCGTCATTTTAAATCCAGTTCTTTTCGTTTGAAAATATATATATAAAAAGTTTGTTTATtTGCTTGTATTATCGATTTGCTGACTGTGAAGCCTCTCTCTCTCTCTcATATTCAGGTCCGACAGCTGACAGACGAGCAGATCCGCCACGTGGTGAAGATGACGCGCGATTTCACCCTCCTCTTCTACAAGGTTAGAAGTTTTTCTCCCATCGATACCAAAAACAAAGTGaGAGAGAGATAGTGAGACGCCTCATTTAGACTTGACTTGCAGTCGCAGATTAATTTACAATCCTGCATTGCAGAGGAAGGAGAGAAGAAgCCAAAAGCCCCGCCTCCTAGGAGTGATAAAACAAATATTCCaATCTATGCATAACAAATCCGGGAAGGTGACTgtttTTTTtCTTCTTtATCCTCATCTTTCTTTTCTTTTTTCTCTCTCTTCTCAGTGTCACAAATCTGGCTCCCCTCTCCGCAAACATGACAAAGTCTACAAGCGTCCCCGGTGCGGCGGCGTCGTCACGGTCTGTCGTCTCGGAGCCAACGGCAGGATGACTTACTTCTGCGGGAGCTGTCAGCCGGGAGATCCCAGCGGGGTCCGCGTCAGGTTCAAATCCTCACGGACATCCGGGCGCTTTGACTGAACCCGGCGTGGTCGCGCgCTTCCTGTCGCGGCGCGGCTCATTCGGGAGTTTGGTCTCGGAGATGTTTGAGGCCGATGACGGaGCAACAGCGGCGAGACCAAAAAAGACAATCCTTTTTAATATAATGTTTGTTAGGCTATTGTATTTCCcTTTTTTTTtCTTTATAATCTAGATAATTTCCTAATTTATTTATTTTTCTTCAGTAAAAAAAAAAAAtCATTTTgAAACaaAAAtAAAACCTTAAATAAAAAGTAAAACTAGAGACTACAATTGTTCCAAgATAGGAGAAAACCACCGTTCTCATTGCATTGTTCCCAAAATATATtTTTTTgTATTCAATACCAAGAAGCGACATGATGTCATTCCTTATTTTTTCATTTATTAATCCGAGTCTTTTGCAAAAAAAATTCTAGAAGCCTTTTTAGATAATACGCTCGCATTTAGCGAAGGCCATCTTTTCGCAGGCAGATGGGCTTGGCAgggagtgggaagtgttatgtggggggggggaggggggGAATTAATGCGCATATACGGCTGTGTTTGCCAGACGGGGCACCGGCTCAACACCTCCTGGGTTGTATTTGAGCAGAGCTTTGCGAGGGGTTAGAGCCTAAAGCCCTTACACCGCATTACACAGCTGATAAAGCAATCTGGGAGGAAAGTTTCCTCAAAGCCGCGGTTACTTTGCTCCTCCGCTACTTTGCGGCGGCGGATTTGCCTTCTTGTCAAACACAGTCGAAGCTTCATGTCGGGAGCGCGAGCGCGTGTGTGTGCTCGGAGCGACGGTCCTCACCCTCTGCCTCCGACTGCACGTGTTTGTCGAGTTAAAAAAAGTCGCCTGTTCTCTACAGTCTTCTGCTAACAGAgtgtgtgtgtgtgtgtgtgtCGTCTAAGCGCGGACACGCTCCCATCGCTCGCCGAGCGGCGTAAATAATTTAGGTCACATTTTCCCCcGGAATGTGAGACTCGTGCAATACTCAGTCGCCATTTATTGAGGCGCACCTCGTTAAAAGCCAATGCAGTGCGATACAAAGCCCCTCCCctGAAACCCTTCTTtCGCCAAGGTCATCATGTTTTTTACGTTTCTTGTTGTCGATTCAGCTGCGCGGaCGTTTTCGGGAGACGGTATTTTGCGGCGGtTGCgtGATTAAGACGTcGCgCCGACGTTCCtAACACTcGGCCGACGTCAACGACCGTGGACAAAAACATCAGTgtcCATTGACgGGcGTCTGTTTTTTATGTTTGTTTATTTTATTTAACTgtCGTCCCGCCCGTGTTTCTGTGTaCCAGTGAGCTGCCGGTCCGGAACAGTTTGATCGGCGGGGCCCGGCGGCGACGTGGCGAAGAGGGAGGAAGAGGACTGGGCCTGGACTGCGAGCAAAGGGTGAGGGCCgTGGAGAGTCTGGATGTGTGCTCCTCCAAGTTCAGCTCCTCCCGCTCCGCGGAGGCGGTGcGGAGCCAAGGCGGCAGGATGCTGCGCGACGTTCTCCTCGACCAGGCCGTCACGCCGGGAGTCGtCAACATCATTAAAAACaAAGCCCTGTTTGACTCGGGcCTCCATCCAGCCGTGAAGGTCCGACAGCTGACAGACGAGCAGATCCGCCACGTGGTGAAGATGACGCGCGATTTCACCCTCCTCTTCTACAAGTGTCACAAATCTGGCTCCCCTCTCCGCAAACATGACAAAGTCTACAAGCGTCCCCGGTGCGGCGGCGTCGTCACGGTCTGTCGTCTCGGAGCCAACGGCAGGATGACTTACTTCTGCGGGAGCTGTCAGCCGGGAGATCCCAGCGGGGTCCGCGTCAGTGAGCTGCCGGTCCGGAACAGTTTGATCGGCGGGGCCCGGCGGCGACGTGGCGAAGAGGGAGGAAGAGGACTGGGCCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06831	H2TH	Formamidopyrimidine-DNA glycosylase H2TH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010979	Homologous_superfamily	Small ribosomal subunit protein uS13-like, H2TH	Interproscan
IPR015886	Domain	DNA glycosylase/AP lyase, H2TH DNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22993	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0003906	Molecular Function	DNA-(apurinic or apyrimidinic site) endonuclease activity	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016799	Molecular Function	hydrolase activity, hydrolyzing N-glycosyl compounds	Interproscan
GO:0019104	Molecular Function	DNA N-glycosylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-