Gene detail

Detailed information of HS16881 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS16881	PROTEIN LIN-7 HOMOLOG	chr19	18282836	18284844	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS16881

ATGGATCAGAAAATCCCATATGATGACTACCAGCTCCCAGTGGTATTCCTGCCTTCATATGAGAACCCACCAGCGTGGATAGCCCCGCAGGAGGTATGCCGCTTAGTGTTAGAACCACACTGGGTGCTTGAATACAAATATTGTGTGAACTCGAGGTCCACAGAGGTTTTGTAGCTTTTTTTCTGAAGCTTTCAACTGCATCTTCAGGTCTTTATCAGGTGTGTATCAGTTTCTCGGTCACGGAGGTCGCTCGGATGTCATCACAGGAGCTTAGTGTGAAACTTCAGTCGCATGATGACAGGGGCTTGTATCTGGGGGTGAGATCATAACCCTTGCCATTGTGTCACGGTGGGATATAAATGGCCTTGACCGTTCTGATCTGTGGTCCCAGAGAGTCGGTGTAGTCTGTTCCCCATGTGTCCTTGTCCCTGCGCAAGAGATCTTTATTGACGATGGAGACGCGTCACATTGAGTAACAATGATCACAGCATTGACTGGAGAAAGTCCTCATTAATGTAGTTGGAAGCTTTGCAAAAAGAAAATATTTGCAACTTGAATTAAGATTGTTTGTTGTCGACCGACTGTGTTTTAAGATTCCCAATGTATCGGAACTGTATATAGATTCATAATTgAACTTTCAAACTAAGTGTATCGAGCTTTTCTGCTTATTCAGATGAATGTGTGGAACTGAGTGTGTTCCCAATTCTCTGGTTTGTTATGTCCTGTAACGTAACTGCAGGTTATCAGATGTATCTGTgAATAAATCAAGGTGTGTAAGAAGAATGAGGCTCATGGGGCTTTTATAGATATCATGCCACTGTTCTCGTTGTATTTCGCCAGCATTTCTTTTTACAATTTTTAGCGGGTTCATCACCCCGACTACAACAATGAGCTCACCCAGTTCCTGCCTCGTACCGTTGTACTGAAGAAACCTCCAGGAGCTCAGCTGGGCTTCAACATCCGTGGGGGCAAGGCATCACAGTTGGGAATCTACATATCCAAGGTGTGTGTGTTGTTAATGCTTGTGGCGCTACTGACTTCATTGTTTCCACGTTGGGATTTCTAATTTGTGTGTGATGTGCTCGCAGGTGGTTCCAGACTCAGATGCCCACCGAGCAGGTCTGCAGGAGGGAGACCAGGTTCTTTCTGTGAATGAGGTGGATTTCCAAGACATAGAGCACTCTAGAGTAAGTTGGAGCAGTACTTTCACATTGAGATCCATAGAGATGGTaTTCAACACATTATTATACACTATCTACTACATCTTCAGTGTAGTCAGAACAAGATGTCTGTTGGGAACGAGCCTttattttagaacATATTTTAGTATTTTAATTCCCATTTAAATATGTAATAAATGCCTCAATAAATTGAACAGCTTTTTATATATCGGTGATAGTctttttacctttgcattgaaaatgcggaaggttatgttttgattgccatttatttatttgtatgcgtgttcctcgcataacaaaaaaagtttaaaaccgaatcgcatgaaatttggtgggattattggttattatccggggaccatttcattagattttgggatcgattgggtcaaaggtcaaggtcatgaaaaggtcaaaatattcttgagtcgcatgaaatttggtgggatgattggttattatccggggaccatttcattagattaaatcttctttttaccatttacctttttatctaattggcatgcaactaatgccaacatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcgctctaccaagtgcccattctagttattatattgcattaagttcattccttcttCCTCTTCAGGCTGTAGACATTTTaAAGACTGCGCGAGAGATACTGATGAGGGTTCGCTTCTTTCCCTACAGTAAGTCTTACTCTGTGAAATCATATCaAGTGAAAATGACGGCGATCTCTAACTCcCATCAACcGTCTGTACTGCACTCTTAcTTTGATGACCCAATCACTTTTAATGACTATAAAATGGATCAGAAAATCCCATATGATGACTACCAGCTCCCAGTGGTATTCCTGCCTTCATATGAGAACCCACCAGCGTGGATAGCCCCGCAGGAGCGGGTTCATCACCCCGACTACAACAATGAGCTCACCCAGTTCCTGCCTCGTACCGTTGTACTGAAGAAACCTCCAGGAGCTCAGCTGGGCTTCAACATCCGTGGGGGCAAGGCATCACAGTTGGGAATCTACATATCCAAGGTGGTTCCAGACTCAGATGCCCACCGAGCAGGTCTGCAGGAGGGAGACCAGGTTCTTTCTGTGAATGAGGTGGATTTCCAAGACATAGAGCACTCTAGAGCTGTAGACATTTTaAAGACTGCGCGAGAGATACTGATGAGGGTTCGCTTCTTTCCCTACAGTAAGTCTTACTCTGTGAAATCATATCaAGTGAAAATGACGGCGATCTCTAACTCcCATCAACcGTCTGTACTGCACTCTTAcTTTGATGACCCAATCACTTTTAATGACTATAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595	PDZ	PDZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478	Domain	PDZ domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR051109	Family	Membrane-associated multiprotein complex regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14063	PROTEIN LIN-7 HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005911	Cellular Component	cell-cell junction	Interproscan
GO:0007269	Biological Process	neurotransmitter secretion	Interproscan
GO:0016323	Cellular Component	basolateral plasma membrane	Interproscan
GO:0045199	Biological Process	maintenance of epithelial cell apical/basal polarity	Interproscan
GO:0045202	Cellular Component	synapse	Interproscan
GO:1903361	Biological Process	protein localization to basolateral plasma membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-