Gene detail

Detailed information of HS16792 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS16792	ELONGATION FACTOR 1-GAMMA	chr19	16203685	16210206	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS16792

ATGTGTATTAAAGTTAAACAATTCTTGTTTTCTCCCCCTCTCCAGACTCTCTACACGTACCCAGAGAACTGGCGGGCCTTCAAGGCCCAGATTGCAGCCCAGTACAGTGGGGCTTGCCTTAAAGTCGCCAGCAATTCTCCTGCCTTCACCTTTGGGCAGACGAACCGCACTCCTGCCTTCCTCAACAACTTCCCACTGGGCAAGGTCAGTGTAGTTATGTTGGACTTTTTTAAAATGTCGGAAAAAAAATCTTaCTGCAATCAATTAATGCAAGCAATAATAAAAAGTAATCAAGTGAAAAGATTTTACCCACTTTCCCTATCTGTTGTTACCAACATTGCATTATGCATTAAACTGCTTGATTGTCTTTAAATCATTCTGAAATTCTGCTATGTTTGTAGGTACCTGCATACCAGGGAGATGATGGTTTCTGTCTGTTTGAGAGTAATGCCATTGCTCACTACTGTAAGTTTGTATTTGTAGTCATTCATGGTTAACTGATTTTCAGTTATGTGTGCATCCAATATTATTCCTATATATTGCTTGCCCTACGTTTTAAAAGGAAGCTGAGTAATTGCTACATTTAGATCAAATAATGTCTGGTGGTAGTCAATCCAAAAGGATTCAAATGCATGGGTTTCTGCTTACAAACATTTAATGCAGTCaaaagaagcaaatctaacgtggtgatccctgatcgtgtattttgcggccaatattaattgcagatcattgataatccacattcgcagatacaaatcgccgttgtttgactatagaagccgatctacacttcccacaattattttcaacctcattataaaccaaccaaacatcagtttactttgtcatagtatttTCATAAGAACAAACAATTGAAATTATTGGAAATATATTTTATGGCAGTGGGCAACCATGTTCCATAGAGAGCTAATGGTCTGCAAATTGCCAGTTTATCATTTCAGGAGATTTAAATTATTTGGCGCATTCAATGGCATATTGATCATTCAAAGGCTGTGACGGCCCTGAACAACAATCAGAAAACGTTCCTCTTTGAGAAACTGATTATTCCCTGTCTGGGCAAGGTGGTGTCCATTCATGGCACCTAGTCTTAATCTGACAGGGGAAGAGAAACTAAAGGCCATGTTCATCCCAGTCAACTCAGTTTAGTGAGTTAAAGGCTGATTCATGCTATGGGCACAGACCAGATTCAACCTCAAGAACGAAAGTTGTTATTGAGCTATTAAAACATTTCTCTATATAAGAAAAATAAatccacatttgcatatacaaatcccttttgtttggttatagaagctgatctacacacctccagacttttctttattccgtcccaaaaatATCAGTTTACTGGTTATAGTATTTTTCAGATATTTTTTTTCATAGAAGCAAATGATGGGGAAAATATAATCTTGCCATTAGTAGTTTTAAAACACTTTTCAACTATTCTCCGCTTGAAGCTGCTTTTCCATGCATGCATGAATGCTAAAATGCCTGGTTTATGCAGTCGGTGTACATAATATAGTGGTATGCCATTATGATTAAATATGTTCACCTTTCACCCACAGTGAGCAATGATGCACTGCGTGGTGCCACTGCCCAGGCGGCAGCCCAGGTGCTGCAGTGGGTGAGCTTCGCTGACTCGGAGATCATCCCTCCAGCCAGCGCATGGGTTTTCCCCACTCTGGGCATCATGCAGTTCAACAAGCAGGTTTGCAGCTCAGCATTTGCTGTTTAAGCTCAAGACTTAATAATGATTTCTTGGCTGTGGTGGAAGGCTGGTAACCGTTTCAGTTGTGTCTTGCACTGTAGTTGAGACATGACATGTAGTAGTTTATATGTTGCGTCGTTGTTATTCATAGTCATTCTTCTGTCTGGGTCTGTCCAGGCCACAGAGCAGGCCAAGGAGGACATGAAGAGGGCCCTTGCCATGCTGAACCAACACCTGAACACCCGTACCTTCCTAGTGGGAGAAAGGGTCAGCCTGGCTGACATCACTGTTGCATGCGCCATGCTCTGGGTCTACAAACAGGTCTGACATGCACACTGTTAACAATATATATTTTTCTTGGAGTAACATGTGTAATGGATGATATTTTGCATTTGAGATGCCCTCAAGGAAGACCTAACACCACTGTGTCCCCTGTAGGTCCTTGAGCCTTCTTTCCGTCAGCCATACCCCAACGTGACTCGCTGGTTTGTCACTTGTGTCAATCAGCCCCAATTCAAGACTGTCCTTGGAGAGGTCAATCTATGTGAAAAGATGGCCCAGTTTGATGGTGAGTAGTCGGCATTGAGATCAGAAGACTCCCATTGAGCATGTTGCTGGAGCAGTGTAATTTACAGGATCACATTTGATGTGTGAACTAGCCTTTCGAAAGATAATTAAAAATCTTTCAGATGAATGTGTAACACATTTTTTGAAAGGGATGTATTCTGTTTCCATGTCACCTAAAAATTAAATTAAATTTGCATTAAACTCTTCCACTTTACCCCCATTTTCGAGCAAAAACGCCTAAAATGATGTAACGAAATTAAAAAACAGGCGTGTAATTGCACTAGTACTAAACACCAGCTTCAAATTTGAAGAGGATAGGACAAAGTATGACCATCCTACATTGTTTTTCGTGAAAAGATCCAGGCGGAGTGCCAAAAAGGACATTTGCAGACTCCAAATGCACACATGGTACCCAAATGATATTATGAGACACTAAAGGAGTTTTCCTTTACATGTTGATATGGTTCAACATATACCAATGTATAGAACTGTAATAACCcCTAATATCACTGCAAAATATAACtgactccaagtggagcagatgtattgcgaaataatatatatacggacatatacacacagacatagatatgtagtatatatacacacacaaatatatgtatcaacatatatatttataaacatgtacatctatattctgtaagggttacgcgtgactcaatttgcatatgCAACACGTCGTTAGAAAGCCAGAAGTCTCCTCTAGAGTAGACGAAGGGATTGACAGTCTAAcctaactgttactaataaaatgtagtcaaacaaaaaacggagcaaatcaccgtgttcatggcccggcaaagatagcgcggtctcctggcttcaacatgttactgtcagTGAAGACACAACGCACCAAACAAAAAGTTgctaacttccgctaacacctccgctaatacatctacttataaagtgtattctgtaggttttctccgtcgaaatgttgcaagacccgacttgcagcatttatcgcgactttagatattgtgtgtttgggctcctcttgtgagaaatgtatacgaaataaaagaatattgatattttctttgcaaagatgaggTGACTAAAGGTTTGCACCCAAAGACCTTGCATTTGAAAATGCATCCATTTGCTTATTTTTAAAGTGTTACAATTCTGTAAATTAATGAATGAATTTTAGTGACAGAAAATGACCCTTTTAATAACAAAGCTAACATCTAGCAATATTTCAGTTAATCTGCAAAGACGGAAAGAAACAAAGGCCAACTCTTTAAACAGGtGGTGTCCATTCATGGCAcCtAGTCTTAATCTGACAGGGGAAGAGAAACTAAAGGCCATGTTCATCCCAGTCAACTCagTTtagTGAGTTAAAGGCTGATTCATGCTATGGGCACAGAAAAGAGACTCACTGTAGTTCATTTAAATATTTTTTATTTATTTTTACTGGTTGAGTCCAAAATTGAAGCCAAATATTTGCCAAATTTAACAGAAAACATGTTTCGATGTTTTGTTTCTCAGCCAAGAAGTTTGCTGAAATGCAGCCCAAGAAAGAGGCACCACCTAAGAAAGAGAAGGGAGGAAAAGAGGCTGCCAAACCCCAGGAAAAGAAGAAAAAGGAAGAGAAGAAGCCGGCCCCAGCAGAGGAGGAGCTTGATGAATGTGAGGCTGCTTTGGCTGCTGAACCCAAAAGCAAGGACCCCTATGCACTCATGGCAAAGAGGTAGAATAATCTTACTGATGTTCTTCTCAAGCATTAGTTAGCATTTTATTTTATGCATTTTTTTTCTTGCATGTTGGCCAATACAGCAGTGGCCAACtGTATTCTATGGAGAGCCAATAGTCTGCAAGTTGCCAGTTGATCATTTCAGGAGATTATTTGGCGCATCCAATGGCATATTGAACATTAAATCCAAAGGCTGACGGCCCTgAAAACTCGTCCGTAAGAAACCGTTTATCCCCTGTCTaaGCAAGGCGGTGTTCATTCATGGCACTAAGTCATAAGCTGTTGCGATTAGTCgGCGTAATCAATCGGGTCAATGCTGAAAATCCGTGGAGCTGCTCAATAAACTAAAAGCCATAAAGTCGTCTGCTACGTTGGAAATTCCATGAAATTTGAAGTGAAACCTGCAGCTCATTTGAAAGTATGGCTTTATCAGAATAGCACTGGCCCAAAATAAGCTTCTCCATTTGCTAGTATCAGCCTGTTGGGAGCTTTAAATCAGACACTATTATGACAACGCCCATTTATGGGAGCAGCTGACCAGGAACTCACAGAATGTTGCTGGCAGGTGCTTCTTGCTCTAATCTTTTGGCTGTCAAACTGCAGTGACGAGCCTATCCATACAACATTGAAAGGCAAGCATCCGTTTGGTGCTCATCGTAAGAAAAGAACATGTCAAACAAATGGATAATACAATTCAACTGGGCAATGTTAGTCTATCACACGCCACTGGTTGAAGTGTAGATGTCATTGAAAGATTAAAAAAGCATTCAGAACTCTTAACATGGAAGGCTGTATGACCTAGGTTTAAGGCTATGTCTTAACAAGGGCCCGAATGCCGTTTTTAACTCCTTTTGAAAATATTGGTGGCCTATATTGATAAAATAACTTCAATTCATGTGCAGAAGTGGTTTTGTTGTCTGATACAGAATTTTTTTACATTTTTTGTAATGGATATATATGACTAATATCATTTTCCCTTTTCTTTTCTAGCTCATTCGTCATGGATGAGTTCAAGAGAAAGTATTCCAACGAAGACACCCTCAAAGTAGCCATTCCCCACTTCTGGGAGAACTTTGACCACGAGGGTTACTCCATCTGGTACTCCGAGTACAAATATCCTGAGGAGCTTACACAGGTCTTCAAGAGCTGCAACCTGATCTCAGGTGAGACTGCAGCAGCCCATTAACCAAACGCCATGAATAAAAGTCAAACATGTTTTTTTAAGGGTTATACTATGTTACCAGTTGTACTTTATTGGTGTAAACATTTTCAATTTTATCAGTGAAGACTGGTTCACATGTTTCTAAATAATTAATAAGCAAATGGTTCCCTGTCTGGGCAAGGcGGTGTCCATTCCTGGCACTATGTCTTAATCTGACGGGGGCAGAGAAACTAAAGGCCATGTTCATCCCAGTCAACTCCGTTTAGTGAGTTAAAAGGCTGATTCATGCTATGGGCACAGAAAAATATATATTTTATGAAGTGTATATGTGTATCGGATGGATGACATCACTGTTTATATCAAATGTTATGTTTGATTTATTTCTAATTAATAAAATGTCTAAAACCCTCCATGTTCTTCACAGGTATGTTCCAGCGTCTGGAAAAACTCAGAAAGACTGCCTTTGCTAGTGTCGCCTTGTTTGGCGTCAACAACAGCAGCAGCATCTCTGGCATCTGGGTCTTCAGAGGCCAGGAGCTGGCCTTCCCTGTAAGTTTTGATGGGGTTGAACAGTTTCCATAATGTCCTGACCGGTTGACGCCCTCATGCATGCAGTGTTTGACAAACTGATTTGGGCTGTTTACGTGTCACGTTGTAAAAGAATACTGCTGCAGCGAAACATGAAACCAGTGTTTCCTGAATGACGCCATGTTTGATTCTGAGAAGTGCCTTGTCTGGGCAAGGCGGTGTgCATTCATGGCACCTAGTCTTAATCTGACGGGGGGAGAGAAACTAAAGGCCATGTTCATCCCAGTCAACTCCGTTTAGTGAGTTAAAGGCTGATTCATGCTATGGGCACAGATTGTTACAATATCTAAATATTGGATGTTTATGGTTGATGGATTTCTTTAATGCTTTTGCCTTGGCTAAGTCACATGACTAAGTTCAACTGCAGCGCACAATTGCACATATTGCATGAGACTTAAGTCAGGCTTTGTTTTAAATGTTGAATAGCTTGACATTATTACATTTGTTAAAGCATGCACTGACAATTTTCAATGCGCACCATGTGATGGTCTAATTATTCTTTACTGGATAAGCATCTGATCCTTAGTTGTGGTTATGCATTATCAATTCGTCAGACTCTTATTAAAAATATATTTTCTATTCCCCTCCTAGCTATTTCCAGACTGGCAGATCGACTACGAATCATATGACTGGCGCAAGCTGGATTCAAAAAGCGAGGAGTGCAAGACCTTGGTGAAGGAGTACCTGGCCTGGGAGGGTGACTTTAAGCACGTGGGTAAAGCCTTCAATGAGGGCAGGATCTTAAAGTGAATGTGTATTAAAGTTAAACAATTCTTGTTTTCTCCCCCTCTCCAGACTCTCTACACGTACCCAGAGAACTGGCGGGCCTTCAAGGCCCAGATTGCAGCCCAGTACAGTGGGGCTTGCCTTAAAGTCGCCAGCAATTCTCCTGCCTTCACCTTTGGGCAGACGAACCGCACTCCTGCCTTCCTCAACAACTTCCCACTGGGCAAGGTACCTGCATACCAGGGAGATGATGGTTTCTGTCTGTTTGAGAGTAATGCCATTGCTCACTACTTGAGCAATGATGCACTGCGTGGTGCCACTGCCCAGGCGGCAGCCCAGGTGCTGCAGTGGGTGAGCTTCGCTGACTCGGAGATCATCCCTCCAGCCAGCGCATGGGTTTTCCCCACTCTGGGCATCATGCAGTTCAACAAGCAGGCCACAGAGCAGGCCAAGGAGGACATGAAGAGGGCCCTTGCCATGCTGAACCAACACCTGAACACCCGTACCTTCCTAGTGGGAGAAAGGGTCAGCCTGGCTGACATCACTGTTGCATGCGCCATGCTCTGGGTCTACAAACAGGTCCTTGAGCCTTCTTTCCGTCAGCCATACCCCAACGTGACTCGCTGGTTTGTCACTTGTGTCAATCAGCCCCAATTCAAGACTGTCCTTGGAGAGGTCAATCTATGTGAAAAGATGGCCCAGTTTGATGCCAAGAAGTTTGCTGAAATGCAGCCCAAGAAAGAGGCACCACCTAAGAAAGAGAAGGGAGGAAAAGAGGCTGCCAAACCCCAGGAAAAGAAGAAAAAGGAAGAGAAGAAGCCGGCCCCAGCAGAGGAGGAGCTTGATGAATGTGAGGCTGCTTTGGCTGCTGAACCCAAAAGCAAGGACCCCTATGCACTCATGGCAAAGAGCTCATTCGTCATGGATGAGTTCAAGAGAAAGTATTCCAACGAAGACACCCTCAAAGTAGCCATTCCCCACTTCTGGGAGAACTTTGACCACGAGGGTTACTCCATCTGGTACTCCGAGTACAAATATCCTGAGGAGCTTACACAGGTCTTCAAGAGCTGCAACCTGATCTCAGGTATGTTCCAGCGTCTGGAAAAACTCAGAAAGACTGCCTTTGCTAGTGTCGCCTTGTTTGGCGTCAACAACAGCAGCAGCATCTCTGGCATCTGGGTCTTCAGAGGCCAGGAGCTGGCCTTCCCTCTATTTCCAGACTGGCAGATCGACTACGAATCATATGACTGGCGCAAGCTGGATTCAAAAAGCGAGGAGTGCAAGACCTTGGTGAAGGAGTACCTGGCCTGGGAGGGTGACTTTAAGCACGTGGGTAAAGCCTTCAATGAGGGCAGGATCTTAAAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00043	GST_C	Glutathione S-transferase, C-terminal domain	Domain	Interproscan
PF00647	EF1G	Elongation factor 1 gamma, conserved domain	Domain	Interproscan
PF02798	GST_N	Glutathione S-transferase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001662	Domain	Elongation factor 1B gamma, C-terminal	Interproscan
IPR004045	Domain	Glutathione S-transferase, N-terminal	Interproscan
IPR004046	Domain	Glutathione S-transferase, C-terminal	Interproscan
IPR010987	Domain	Glutathione S-transferase, C-terminal-like	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR036282	Homologous_superfamily	Glutathione S-transferase, C-terminal domain superfamily	Interproscan
IPR036433	Homologous_superfamily	Elongation factor EF1B gamma, C-terminal domain superfamily	Interproscan
IPR040079	Family	Glutathione transferase family	Interproscan
IPR050802	Family	Elongation Factors and Glutathione S-transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43986	ELONGATION FACTOR 1-GAMMA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003746	Molecular Function	translation elongation factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006414	Biological Process	translational elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-