Gene detail

Detailed information of HS16222 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS16222	PROTEIN EIGER	chr19	459383	469237	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS16222

ATGGCCTGCGACGCGTCCCCCGCGGAGGACTTCCGGGACACCGCGATGCCCGGAGCCGCCGCGTGCACGTGCGCCAAGAAGTGCCGGAGCCGCAGCGGCAGCGGCAGCGCGCTGTTCCTGGGCTTCTTCCTGCTGTCGCTGTCGCTGCACGCCGCCACGCTGCTCTGCTACCTGGACCTGCGCTCCGACGTCCAGCGGGAGATCAGCCACCACAAGCGGGACTCGGTGGCGCCCCTAGCGGCCAGGGAGCCGGCCGACCCGGCCGCGCTGCTCGCGCCCGGACGCCCGCGACAGGACTCCGGCTTCAGCCGCGGCGGCGCGCAGGCCCCTGAGGTAAGACATGTGTGGAGTTATGAGTATTACAGatgatgaagaggagctcatcatggccacattgtgactgaatgatgaagaggagctcatcatggccacattgtgactgaatgatgaagaggagctcatcatggccacttcgttactgaatgatgaagaggagctcatcatggccacattgtgactgaatgatgaagaggagctcatcatggccacattgtgactgaatgatgaagaggagctcatcatggccacttcgttactgaatgatgaagaggagttcatcatggccacattgtgactggatgatgaagagcagctcatcatgTGGGGGACCTGAACGGGACCAGCAGCAGGTGCAGAGCCCAAGGGCCGATGTCGATGCAGCAGGACTCTCACAAGTGGTCCTCTAGTGGCAGCgaaggtcctccgtgaaggtcctctgaaggtcctctgaaggtcctccgtgaaggtctcctgaaggtcctctgaaggtcctctgaaggtcctccgtgGGGGGCATTGGCCGGTCCGGCAGTCAGCTGGGGGCGGGGCCTGAGGACCACAGGCCACCTGCTGGTGTTGCCTTCTGCTGGtTGGGAGCCGGCCGTAGTGGTCTCTGGGTCCTCAGTGGGTCCCCGTTGGGGGGGGTCTGTAGTGGATCCAGATGGGGCGCTCCGCGAGGTGAAGGGTGCAGCTGCCTCCACTCAGGGCCACATGCTCCAAACAACTCTGATTACACAGCCGGCGTTTACACGGCAACGGGAGCATGTGGCCCCGGCACGCCGCCGCCGCACGCGTTAGCGCTCTGGCATTTCCTTTGAAGAATCTCTCTTGTTGAGCTACAAGTTGTTTGTTAGACTTTtcacacacgtcttcatcacacacgtcttcatcacacacgtcttcatcaGAGGCTCCTGTCAGGAGCGTGAAGCGTGACCGCTGTGGGCCGCCCTCGTCTTCCTCTCCCTCTCCTAACAGCGGCTCTGTGCACCAATTAGTGTTTTATTTAGTTTTCAGCCGTCTGCTCAGCGTCACGTCAAACTCGGTTTGTTTAGCGGAGGAATAACTTCTAAAAGATGAAAGACTTCGTCTGGATGTTGGATCTTCTCGTGCGTCGGGATCGCTTCATGGAAACTCCTCCTGTGTCTATTCTGAACTTCTATTGTGGATCCCGTAATGTTCTAGTGTGTTCCTCCTCCAGGAGTGTCTGTCAGCGTCTCCTTGTGTTCCTCCTGCTGGACTCATGAGTTAACATggagcagagaggaggagcagagaggaggagcagagaggagaaatagagaggaggaatagagagccggagcagagaggaggaggagagaggaggaatagagaggaggagcagagaggaggaatagagaggaggagcagagaggcggagcagagaggcggagcagagaggaggaatagagaggaggagcagagaggaggaatagagaggaggagcagagaggaggcgcagagaggaggaatagagaggcggagcagagaggaggaatagagaggcggagcagagaggaggaatagagaggaggagcagagaggaggagcagagaggaggagcagagGTCAGAGATGACCCTTCTCACTCTCCAAACCCAGCTTGTAGCTCCTGCTGAGCCAGTCTGGCGCTCAGCAGTCCCGGTCTGCCCTTGAGCAAGGCAGTGCAGCCCATCTGTCCTGCAGAGCGGCGGAGGTCCCAGGTGTGAAGCGGGGCGTTCCCGCATGAGAGCAAGTGTTGCTCGCCCCTCGCTCACCTGACCCGAGTGGCACGTCGTAAAGGCCGGGGTATTTAATGGCGTTGGCTCTGATAGCGTTTTATTCTTCAGACtaacatttttcttataaccattatatgaaataatgttctcctctgatgtttgccttcaaagtccctcggagaacagatgctgaaacatctggagtctacttagcggctattaaaaaaagtcagtttgatGGGACACGAGGTCCTCGGCTCCGGGGGCCCGGGTGGGCCGGCCCACTTCTCCTGTAACGGTGACCGGAGGAGGTCTGAGGCCGGAGgaggtcagagccgccctgaggtcagagcggccctgaggtcagagcggccctgaggtcagagccgccctgaggtcagagccgccctgaggtcagagcggtctgaggtcagagccgccctgaggtcagagccgccctgaggtcagagcggccctgaggtcagagcggtctgaggtcagagcggccctgaggtcagagcggtctgaggtcagagcggtctgaggtcagagcggtctgaggtcagagccgccctgaggtcagagcggtctgaggtcagagcggtctgaggtcagagccgccctgaggtcagagccgccctgaggtcagagcggccctgaggtcagagcggccctgaggtcagagcggtctgaggtcagagcggccctgaggccagagcggccctgaggtcagagcggtctgaggtcCCGGAGCTTCATCCTGGGGGCTGCAGTGAGTCACATCCTCGCGCAGCAGCGGGGGTCCAAGTGCAGCCGCACTCCCACGCTTTGAAGCTCTGAGGCCTCATTAAAGCCTTTCCCCTGAGCACCAGAGGAGGCGTGACTCAACAGTTGGCACTCGGCAGACATACCAACACGTTGTCCTCCTGATTTACTGTAAGCCGCGTTGCTTTGAAGGCCACGAGGCTGTGAATGTTGTCATGAAGTGAAATGAAGCAAACAAACCATCATCACTTCCTCTTCTGAGAGTCACGCTGTGGAGCGTAACTCATGTTTGTCTGAACAGAGGAACGTAGAACATGCACCCACAATCCTTAGAGGGAGAAGCCCCGATACGCCATGTGGAGACACCTGTTCACCAAAGGAGCCGCCAGCACccccaacgccagctccaacgcttagccccaacgccgcccaacgcctagccccaacgcctagccccaacgcctagccccaacgcctagccccaacgcctagcccccaacgcctagccccaacgcctagcccccaacgcctagccccaacgcctagccccaacgcctagcccccaacgcctagccccaacgcctagccccaacgcgcctcagcctggcctcaacgcctagccccaacgcctagccccaacgcctagccccaacgcctagccccaacgcctagccccccacgccagccccaacgcttggccccaacgcttggccccaacgcctggcccccaacgcctggccccaacgcttagccccaacgctagccccaacgccagccccaacgcctggccccaacgccagccccaacggccccaacgcctagccccaacgcctagccccaacgccagcccccaacgcctggccccaacgcctgccccagcccccaacgccagccccaacgcctggccccaacgcctgccccaacgcagccacgcctggccccaacgcctagccccaacgcctagcctcaacgcctagccccaacgcctagcccccaacgcctagcccccaacgcctagccccaacgcccagcctccaacgcctagccTGCCGCGCTCAGAGCTGGTCAGAGTGTTGGACATGATAGCGCTCCTCCCTGACCATGGGGGGGTCCCACATCTGAGACGAGGTCTAGCAGAAGAAACTGGAAACACAACCCTTCCTGTCTTCTCCTGGTGTTCCCGTGGCTCTGCCTGGAAACCACACGAGGCACCGGGAGTTCACGGCTCTCTGCCGGAGATTTCTCGCCGCCGGGTTTGAAGTGAACATAACCACGATGTTTATTTGAGCCTCACGGCTTGTGCCCAACTGGGATGAGCCCCATGAAGGAGGGAGGTCAGAGTGTCTGTCAGGGAGATCGTCTGACTCGGGCCCAACGGAGACATGAGCCAACGTTATTTATTATCTTTTGATCCTGCAGTTCTCCAACCGAACTCCAAGCAGTCCGGCACAATTCCCCGTGTCTGGTCGTCTGTCGGCGGCTGTCGGCGCCCGCGGCCTCACACTCGCACCATTATTCATGCTGACACTCCAAAGTGTGACCGAAGGCTCGGGGTGGTTTCTGTTGTGTTTCCAACGTGGACTTTTCTTTGTCTGTCGGGTTCTGGGTCTCCTCCAAGGATGTGCTGACAAACGGCTGCTCTCACCGATCTGCTGGTCCCGCTGGTCTCCGGCGGGCCGCGGCGGGGTCAGCGCCGGGTCAGCGCGCCCCACAGAGTTCATGTGAATGTAGGCCGGCCACAACACAGGCGTGCGGTGAGCCCCCCCATGGGAACACCCCGCCGCTAGCAGAGCCGTTCCTGTTTTAGGGATGAGCTCAGATCCTTTTCTTTTTTTGACTTATTCATCTCCCGCTGAATAGGCTGAGACCAGGTGCCCCATGAATGGGTCCTGCTCTCAGATTAACGTGATTCACGTCCTCCTTTTGTACAAAAGGTGACTTTTAGAGCCTCTTGTCGAGGTCTCAACCGGCAGGAAGCAGACAAAGGTGACTTGGGTTACAGGATGTGTTGCAGCCCCGACGGCAGACAATGGCTCGGCTCTCCTCTTTTCAACTGACCCAAGTTGTCTCTGTGCAAACATTATCACCCCACAACAGAAACGGCCACTTGTAACTTGGGTTTCGCCGGTGAATGCGTGTCTCACTCCTTCCTTTTGTCTGACCCACAGAATCAATACGCGGTGTCCGTGTTGGGAGGAGAGGCTCGCTGTGTGCAGCAAGTGGCCCTCCTTGAGTTCCCATGCTCACCTTGTTCCTTTGTCTCCAGGAGAGGCTCCACCGACACGCCGAGGACCACCGAGGGGGCGCCACGCAGCGGGCCAAGAGGAGTCCGGGGAGGCCGCCAGAAACGGGTTCGTTGGGATTCCTCATAAGTCAGTACTACGTCAGGTCCTTCACCTGAACCAGGACGGGGTCTGGTTCAGGTCTTCCTTAGACCTCGGTACAGGACGGGGTCTGGTTCAGGTCTTCCTTAGACCTTGATACCGTGGTGGTTTATTGTCTCTCCTCGGTCCCCGAATGACTTGTCTTTGTTTTCTGGtgcaccTGCACCgtctggtccgggtctggtccgggtctggtccgggtctggtGGGCTGTACTTGTGAGTCTCTTGGTCGGTGTGAAAAGCCTTCGGGGTCTTCAGGTTTTTAGGTTTTGAAAAGCGTTTTCTGGTTTGACTCTTTTAAAGCTTTGTGCTTAACAAAGCGGCTCCACCGCATAATGTTACAGAGTTTATAGAGCAAAGGATTAAATGGCCTGGCAGTGATTATTACTTGGACAGCAAACGAGCACAATATGGAGCTCGGGAGGGTTTCACCAATTTGAACCAGACATCGAAGCCCGTGTTGATTTCACCGTCTCGGAATAATATCAGGCCCCCGAAATATCTCTACTGTCCATCAAATATGCAGAAGGAGAAGTTCAGGCCGGCTGGAGAACAACCCAGACCTCTTCATGGCCCTGCAGTGGTCTCTAGGAAGGCCTGAGAGAGGCCATCATCTGAGACGTGGTGGCTTTCAAGTGTTCCAAGTGTTTTCATCATCATCAATGAGAGAACACATGGCCATAGGAGCAGCGCCAGGCAGTTTGTGTTTAGAATGTGAGCGATGCAAATAAAACGAGGCTTTGAAGTTTGATGTCTGAGTGGAACAAGTGCAGCATGATCACAAGGCATTCCAACGTCTGTGGCATGACACTGAATACTgGGGGGGGGGGGGGTGATTGTGTTTAAATTAGAAGAAAAAACTCACCTTGAGACTTTCTACATAAATCAGTCCCTCACTAATCATTCCCAGCTCTCTGCTCAGCGCAGACAAAAGCTTttgtaatctcagccttagatgtgtgtgtgtgtgttgtgtttgcacgtgtgtatgtgtgtgtgtacacattcacacatacacacacatacacatatatacacatacatacatatatacatatacacacacatggttgtcaaggggagacgcacacacacactttcatctgcattctccatctgggcttcattgAGAGGCTGTTGGCAGCTGCAGTGTCTCTAATGATGGTCTCCAGGTCCACGGCCGTGGAGGCTTCAGGCACTTGTTGATCCAGAGGAGGTGCAACCACACAGCCCTCAGAGGAGGAGGTGCACTAGAGGAGACCAGCTTCATCCCACTGCTTTGTTCCTACAGAATCCACTGGGAGGGAAAGGAGGAGAGAGAAGAAGAAAGGTGAGCCTGCTTCCTCCTtcctgtagcgtcctgtagcgccctgtagcatcctctagcgtcctgtagcatcttctagcatcatgtagcatcctgtagcatcctgtagcgccctgtagcatcctctagcgtcctgtagcatcttctagcgtcctgtagcgtcctgtagcgccctgtagcatcctctagcgtcctgtagcatcatgtagcgtcatgtagcatcctgtagcgccctgtagcatcctctagcgtcctgtagcatcttctagcatcctgtagcatcctgtagcgtcctgtagcatcctgtagcgtcctgtagcgccctgtagcatcctgtagcatcttgtagcgtcctgtagcatcctctagcgtcctgtagcatcatgtagcgtcctgtagcgccctgtagcatcttctagcatcctgtagcatcctgtagcgtcctctagcgtcctgtagcatcttctagcatcctgtagcgtcctgtagcaacctgtagcatcctctagcgtcctgtagcatcatgtacggccctgtagcgtcctgtagcgtcctgtagcgtcctctaacgtcctgtagcgccctgtagcgtcctgtagcgtcctctagcgccctgtagcgccctgtagcgtcctctagcgccctgtagcgtcctgtagcgtcctctagcgtcctgtagcgtcctgtagcgccctgtagcgccctgtagcgtcctctaacgtcctgtagcgtcctctagcaccctgtagcgtcctgtagcgtcctctaacgtcctgtagcatcctgtagcgccctgtagcatcctgtagcgtcctctagcgccctctagcaccctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcatgtagcgccctgtagcgtcctgtagcatcttgtactctcctgtagcgtcctgtagcatcctgtagcgccctgtagcgtcctgtagcatcctctagcgccctgtagcgtcctgtagcgtcctgtagcATCATGTTACAGGATGCTTCCTGTGCTCCTCTAGGTCTCGGCCCTGAGCAGCTGCTCTGCACATGTGCAGCTCTATGATCCGACTCACCTGCTCAGTGCTCTGTGTTTACCATTGAGCTCTCTTCACAGGGAGGAAGCGGTCTGTGCCGGGGccccctggtccccctggtccccctggCCCACAGGGGCCACCGGGCATCCCTGGAATCCCCGGTATTCCAGGAAGCAACGCTGTGGGGCCTGCAGGACCCCCTGGGCCACAGGGGCCTCCGGGCACTCCAGGTCCAGCAGGTATTACAACTTAAAATATAAATAACGCGATAAGAGCcaggcctgggggccagaggcctggaaccagaggcctggaaccagaggcctggggacaagaggcctggaaccagaggcctgggggccagaggcctggaatcaaaggcctggaatcaaaggcctgtaaccagaggcctgggggccagaggcctggaaccagaggcctggaatcaaaggcctgtaaccagaggcctggaaccagaggcctgggggccagaggcctgggggccagaggcctggGGcctcatgtcttgtgtcctcatgtctcgtgtcctcatgtctcatatcctcatgtttcgtgtccttttgccctcatgactcgtgtcctcatgccctcatgtcatatgcctcgtgtcctcatgccctcatgtcatatgcctcgtgtccttttgccctcatgtcatatgcctcgtgtccttttgccctcatgccttatgtctcatgtcctcatgtcttgtgtcctcatgtctcgtgtcctcatgtctcatccctcatgtattatgtcctcatgcctcgtatcctcatgtctcgtgtcctcatgtcttatgtcctcatgtctcatgtctcgtatcctcatgtcttatgtcctcatgtctcatccctcatgtctcgtgtcctcatgtcttatgtcctcatgtctcatccctcatgtctcatgtcctcatgtcctcatgtctcatccctcatgtcctcatgtcttatgtcctcatgtctcatccctcatgtctcatccctcatgtctcgtatcctcatgtcttatgtcctcatgtcttatgtcctcatgtctaatccctcctgtcctcatgtctcgtatcctcatgtctcgtgtcctcatgtctcatccctcatgtcctcatgtctcatccctcatgtcttatgtcctcatgtctcgtatcctcatgtcctcatgcctcatccctcatgtcctcatgtctcgtatcctcatgtcctcatgtctcatgtcctcatgtctcgtatcctcatgtcttatgtcctcatgtctcatccctcatgtcttatgtcctcatgtcttatgtcctcatgtctcgtgtcctcatgtctcTTGACTCTCTCCCTTATCGTTCCAGGTGTTCCCGATAAGACCAAAACCAAAGAATTCCAGGTAGAGCTTGTGATTGAAGACGGATGACCAGCGGTGTCTTGTTGACTGACTCACTCAtgttgttgttgttgttgttCCTCAGCCGGCAGTGGTCCATCTCCAAGGCCAGGAGACCACCATCCAAGTGAGAGAAGGTGGGACGGACCCCAATGAGCTGATGTTATGTGACCTCCGTCAACAACAGCTGTTGTTTACCGTGTACCTGTGTCTATGAgtttgtttgctgttgtttgttgactgttgtttgtGGCTCAGATCTGTCTGAAGGCATCCTGAGGAACTGGAAGATGGTGTCCATCCACCACCGCGTGTTTAAGATGCACTCGCGCTCCGGGGAGCTGGAGGTGCTGCTGGACGGGGTCTACTTCATCTATAGCCAGGTAGAAGTGAGTACGCCGCTCGGTCCTCTGCTGGGTCGGTGGGGAGACGCCCTCTCAGACCCTGTGGTGTGTCCCCAGGTGTACTACCTCAACTTCACCGACATCGCCAGCTACGAGGTGATGGTGGACTCCACCCCCTTCCTGCGCTGCACCTGCAGCATCGAGGCCGGCCAGCGCAAGTTCAACACGTGCTACACGGCCGGGGTCAGCCTGCTGCGCGCCGGCCAGAGGATCTCCATCCGCATCGTGTACGAGGACACGCTCATCAGCATGACCAACCACACCACCTTCCTGGGCAGCGTCCGGCTGGGAGAGGCGCCCTCTGCTGGACAGAACATGGCCTGCGACGCGTCCCCCGCGGAGGACTTCCGGGACACCGCGATGCCCGGAGCCGCCGCGTGCACGTGCGCCAAGAAGTGCCGGAGCCGCAGCGGCAGCGGCAGCGCGCTGTTCCTGGGCTTCTTCCTGCTGTCGCTGTCGCTGCACGCCGCCACGCTGCTCTGCTACCTGGACCTGCGCTCCGACGTCCAGCGGGAGATCAGCCACCACAAGCGGGACTCGGTGGCGCCCCTAGCGGCCAGGGAGCCGGCCGACCCGGCCGCGCTGCTCGCGCCCGGACGCCCGCGACAGGACTCCGGCTTCAGCCGCGGCGGCGCGCAGGCCCCTGAGGAGAGGCTCCACCGACACGCCGAGGACCACCGAGGGGGCGCCACGCAGCGGGCCAAGAGGAGTCCGGGGAGGCCGCCAGAAACGGAATCCACTGGGAGGGAAAGGAGGAGAGAGAAGAAGAAAGGGAGGAAGCGGTCTGTGCCGGGGccccctggtccccctggtccccctggCCCACAGGGGCCACCGGGCATCCCTGGAATCCCCGGTATTCCAGGAAGCAACGCTGTGGGGCCTGCAGGACCCCCTGGGCCACAGGGGCCTCCGGGCACTCCAGGTCCAGCAGGTGTTCCCGATAAGACCAAAACCAAAGAATTCCAGCCGGCAGTGGTCCATCTCCAAGGCCAGGAGACCACCATCCAAGTGAGAGAAGATCTGTCTGAAGGCATCCTGAGGAACTGGAAGATGGTGTCCATCCACCACCGCGTGTTTAAGATGCACTCGCGCTCCGGGGAGCTGGAGGTGCTGCTGGACGGGGTCTACTTCATCTATAGCCAGGTAGAAGTGAGTACGCCGCTCGGTCCTCTGCTGGGTCGGTGGGGAGACGCCCTCTCAGACCCTGTGGTGTGTCCCCAGGTGTACTACCTCAACTTCACCGACATCGCCAGCTACGAGGTGATGGTGGACTCCACCCCCTTCCTGCGCTGCACCTGCAGCATCGAGGCCGGCCAGCGCAAGTTCAACACGTGCTACACGGCCGGGGTCAGCCTGCTGCGCGCCGGCCAGAGGATCTCCATCCGCATCGTGTACGAGGACACGCTCATCAGCATGACCAACCACACCACCTTCCTGGGCAGCGTCCGGCTGGGAGAGGCGCCCTCTGCTGGACAGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00229	TNF	TNF(Tumour Necrosis Factor) family	Domain	Interproscan
PF01391	Collagen	Collagen triple helix repeat (20 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006052	Domain	Tumour necrosis factor domain	Interproscan
IPR008160	Repeat	Collagen triple helix repeat	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR051748	Family	Tumor Necrosis Factor Ligand Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15151	PROTEIN EIGER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005123	Molecular Function	death receptor binding	Interproscan
GO:0005164	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0006955	Biological Process	immune response	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038177	Molecular Function	death receptor agonist activity	Interproscan
GO:0048018	Molecular Function	receptor ligand activity	Interproscan
GO:0048513	Biological Process	animal organ development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-