Gene detail

Detailed information of HS16112 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS16112	DYNAMIN	chr18	27802591	27805746	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS16112

atggtggtggacttcaggaggaaggcgacagctcctacacctctgagtgtcctgggagtggacgtggacatggtggaggagtacaagtacctgggcgtctccatcgacagccgactgaactggaaggccaacatcaacgctgtgtacaagaaggggatgagtcgactttttcctgagaaagcttcgatccttcaacgtgcagcaagatgctggagttattctaccagtcggttgtggccagtgtgctgcactttgccattgtctgctggggagcagcatcgagccggtgacaccagccgccttaacaaactggttaggaaggctggctccatcatcggctgccagctggagcacctggaacaggtggtggagaggaggacgttgaagaaactggtgtccatattggacaacccggaccaccatccaccacctcctacagggacagaggagtactttctccagacgtctcctcacgctccgctgccacaaggagagatacaggagaacattcctgccgacggctatgaggctctacaacagttcacctcttgccagatcaccctaacccttcttataatttttttttttttttttttttttttttttttttaaattcttgtgtgttgctgctactgactcgacaaatttccccttggggattaataaagtatatatctatctatctatctTTGCCACGCTCAGAGAACGGTTTGCGGCTTGGAAAAAGATCATCGAGGACCACGGAATACAATGTGAGTGCATCAAGAACCTGGTTCTTACGCcGAGTGTTGGATGTGGTTTCCGTACTATCTTTCACACATTCGTCCCCATTGCAGTCAACCTGAACATCGAGAAGGAGGTGAGTGAGTATGAACGGAGGTACCGCGGAAGAGAACTGCCGGGGTTCATAAACTACAAGACCTTTGAGGACATGGTGAAGGAGCAGATCAGACAGCTGGAGGGGCCCGCCATCCTGACACTCAAGGAAGTGGCAGGTATGTCTTgggttggggaccgaaaaccggggccaatatgttacaggtgactgtaggctacgaccggtgccgaccggaccgaaacgcaacgcacgcttcggtgcttcctttcggtgccagagccgattgaaattgaaaaaatatattattgtgaacttctttggtgagcaggttacgatagcctagcatttaacaccagcatgcacctgtttgattgtttgcgttaaccctgccgagcacattagcggtcaggctgggcgcgatggggagacggtatccttaaaaatgggggtgaccgatgatgacaagagcagctttaactcagattagtactttaatgttgattgcaagtcttgcattcataaaagtaggccaacaaatgagaaattagccatgataaccatgtttaagctagtgcgagctatgagctagcgcgagctacgagcgcgacattctgatatccgtttgttgtcagtgctccatgagaacggcttttacagggaatctggccgaagaggtttttaatgtcgtcattgtccatcgtcgttttgtgcttcttcttttttaaccatcggttcaggcaccgtttaggaaccggtatctttttaaaagtaggctaccggtttagcaccggtatcgaaaaagaaaagaaaaaaacgatagtcctacccatccctggGTATGTCATACGTTGACGCTACAATGATATGTGTACCACTTTGAGGTTCATTTAGATCTTGTATTGTCTGATTTGTTCTCTGTTTAGACGTTGTGGCCAAAGAGCTGTCGAAGTTGGCTGAGAGCAGCTTGGTTGGATTTCCTAcTCATCAAAACAGCCCAGGTATAATCTGCTTTCCTTTATTTGCATACATCACTAAACATCGTTGAATATTgACCTGATCATTTTATATTTCCTTTAGATGAAGATTGAAGCCATCAGAAAGGAGAAGGAGATCGCAGCAGAGTCCATGCTGAGGACTCAGTTTAAGATGGAGCTGCTTGTTTACACTCAGGACAGCACGTACAGCAAGAAGTTAGGGAAGAGGAAGAGGGAAGAGATGCAGAATTATACtccgacttctcctccatacagttcgacttcaccttcatacagtccgacttcaccttcatacagtccgacttcTCTTCCATTCAATCGAAGCACTTTGATCAATGACAGCGGGGGCACCCTGAGAGAGATGGTCAAACACCTGAAGACCTACTACAAAGTAAGTGTAATCGACATGCAGGATGTTTTATTTCTCTTCCTCACATCATGTTttacatcgcacattttatacaatgtaaaaaaagatcagaaagaaaaggtttattttaatccgcacctcctcctactccattagaacttattggacgtggattggcttaattgtacatcactcattatctttgatcagtaataggctaaactgtttcttagccccgcctcttttgggccaaaacgattcggccccagtgcagcggagacatgcaggaaaagcatatattttccgaagatatcctatttaaagaatattactgggtatattccatatctccaaaacatacatattgacaatttgtataatttatgaatataattataataatcgttgtttttctggactcaaggtgggtggggcaaggccccgtggctctctattggccagccgccactGAGTAGAATACATTTTCATATTCAAAATGCAGCAGAGTAAATAATTTCTAACAACCTCCGGTACGAACCATGTGTGCTAACGGTGTAAACCAAACACAGGTGTTCTTGTCACAGTGACGGGTAACAGCATGACGGCCCGACTTCTCCTTTTCTgAACCGCAGATCGCCGGCCGGCGCCTCGCCGACCAGATCCCGCTGGTGATCCGCTACCAGGTGCTGCAGCAGTCTGTCAACCAGCTGCAGAGGGAGATGCTGCAGTTGTTTCAAGACAAGAAGATAACAGAGTGTCTCCTTCAAGAGGACCCTGGCATAAAGAACCAGAGAATCCACCTTCAGACTCGCCTCAAGCGGCTGTCAGCGGCACGCAATCTGTTGACTGAATTCAGTTTGAACACGTACAACTTCAACAAAGGCCGAAAGACAGAACCCAACGCAGGAAAGAACACAACAGCACAGCCACTCCCCCCCCACACACATCCCTGAatggtggtggacttcaggaggaaggcgacagctcctacacctctgagtgtcctgggagtggacgtggacatggtggaggagtacaagtacctgggcgtctccatcgacagccgactgaactggaaggccaacatcaacgctgtgtacaagaaggggatgagtcgactttttcctgagaaagcttcgatccttcaacgtgcagcaagatgctggagttattctaccagtcggttgtggccagtgtgctgcactttgccattgtctgctggggagcagcatcgagccggtgacaccagccgccttaacaaactggttaggaaggctggctccatcatcggctgccagctggagcacctggaacaggtggtggagaggaggacgttgaagaaactggtgtccatattggacaacccggaccaccatccaccacctcctacagggacagaggagtactttctccagacgtctcctcacgctccgctgccacaaggagagatacaggagaacattcctgccgacggctatgaggctctacaacaAGAACGGTTTGCGGCTTGGAAAAAGATCATCGAGGACCACGGAATACAATGTGAGTGCATCAAGAACCTGGTTCTTACGCcGAGTGTTGGATGTGGTTTCCGTACTATCTTTCACACATTCGTCCCCATTGCAGTCAACCTGAACATCGAGAAGGAGGTGAGTGAGTATGAACGGAGGTACCGCGGAAGAGAACTGCCGGGGTTCATAAACTACAAGACCTTTGAGGACATGGTGAAGGAGCAGATCAGACAGCTGGAGGGGCCCGCCATCCTGACACTCAAGGAAGTGGCAGACGTTGTGGCCAAAGAGCTGTCGAAGTTGGCTGAGAGCAGCTTGATGAAGATTGAAGCCATCAGAAAGGAGAAGGAGATCGCAGCAGAGTCCATGCTGAGGACTCAGTTTAAGATGGAGCTGCTTGTTTACACTCAGGACAGCACGTACAGCAAGAAGTTAGGGAAGAGGAAGAGGGAAGAGATGCAGAATTATACtccgacttctcctccatacagttcgacttcaccttcatacagtccgacttcaccttcatacagtccgacttcTCTTCCATTCAATCGAAGCACTTTGATCAATGACAGCGGGGGCACCCTGAGAGAGATGGTCAAACACCTGAAGACCTACTACAAAATCGCCGGCCGGCGCCTCGCCGACCAGATCCCGCTGGTGATCCGCTACCAGGTGCTGCAGCAGTCTGTCAACCAGCTGCAGAGGGAGATGCTGCAGTTGTTTCAAGACAAGAAGATAACAGAGTGTCTCCTTCAAGAGGACCCTGGCATAAAGAACCAGAGAATCCACCTTCAGACTCGCCTCAAGCGGCTGTCAGCGGCACGCAATCTGTTGACTGAATTCAGTTTGAACACGTACAACTTCAACAAAGGCCGAAAGACAGAACCCAACGCAGGAAAGAACACAACAGCACAGCCACTCCCCCCCCACACACATCCCTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01031	Dynamin_M	Dynamin central region	Family	Interproscan
PF02212	GED	Dynamin GTPase effector domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000375	Domain	Dynamin stalk domain	Interproscan
IPR000684	Repeat	RNA polymerase II, heptapeptide repeat, eukaryotic	Interproscan
IPR003130	Domain	Dynamin GTPase effector	Interproscan
IPR020850	Domain	GTPase effector domain	Interproscan
IPR022812	Family	Dynamin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566	DYNAMIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0051607	Biological Process	defense response to virus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-