Gene detail

Detailed information of HS16064 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS16064	MRNA EXPORT FACTOR AND BUB3	chr18	26400430	26403810	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS16064

ATGATGAGTTTATTTGGGGCGACCTCTGGGTTCGGAGCAGCGGGGGCCGGTGTCTTTGGAAACGCAACAACAGACAGCCACAATCCCATGAAGGTAAAACCAGCATTCGACAGAGACGTGTCTAAACTCCCACAGACGGTTCTCTGTGAACTCTCTTCTGCGCTGTTCTCCGTTTCCATTTGTTGTTTGTGTTCCTCCAGGATGTGGAAGTGACTTCCCCTCCAGATGACAGCATCAGCTGTCTGGCTTTCAGCCCCCCCTCCATGCCGGGGAACTTCCTCATCGGAGGATCCTGGGCCAACGATGTGAGTTATGTATTCAATCATATTCACGGTGTCCAGGAGAATATTTGGTTTCAGTGAAATGTCACGGATgAGCATTTTAATACgAGATTTGACATGAATGACTACATCTACACCGGATAGCGAGCCGGTTATCCATGTGGTATCATCTGACCTCAGGTCCGGTGCTGGGAGGTTCAGGACAATGGGCAGACGGTCCCCAAAGCCCAgCAGATGCACACGGGTCCAGTGCTGGATGTATGCTGGAGTGACGTAAGTCTCATCATGTGAAGTAGTTGAAGCCATGGGGCTGATGCTCTCTGCAGGGCCGCGCAATCATTTAAGATGTACTcagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatggtaatttccagacctggaaaagtcatggtaaatacttaaatcacaaaagttttggaaaagtcatggaaatttgttatattcacatgttcatttacgtcgagtttaaaataattcatatgtttctgaaaggaagactctcaaattataagccggcgtacgccaagtccaaacagatgagtttgcacataaaggataatagtttgatttaaagaataaacatttatataagtgtttctaagaataaacatgtatcgtaatgtttattcttttaatcaaactattgtctctcattcatttgtttcatttaaggtatattgtatgctttgtaattctcattgtttgaatactacatcttcaaaaagttttcatgtacacaccgagatttcagtttggtcgtggaaatttggtttaaagtcatggaaaagtcctggaattccattggtcaacatgtgtacgaaccctgTGTACTATTCCTTTTCTTTTTACCAGGATGGGAGTAAAGTCTTCACTGCTTCCTCTGACAAAACAGCCAAGATGTGGGATCTTAACAGCAATCAAGCTATGCAGATTGCACAGGTCGGATACCAGTGTATACATTAACTACGTTGTCATGACAATGAAGCGCAATCATCTGACGCCTCTCGCCATTTCTCCTCCCAGCATGATGGTCCGATTAAGTCAATCCACTGGATCAAAGCCCCGAACTACAGCTGCATCATGACCGGCAGTTGGGACAAAACACTGAAGGTACAACAGCACTCTGAACATTTCCACACATTTTTTAAATATAGGATCCCAATGATATaTAAAAAACACAAGACCATGAATTATGATTGTCCATTCTGCTTCGAGAGGAGCCGTCTGTCCAACTTTATTTCAGTCACCTCTGGACCGCCAGCATTTGAGTAACCATATGAATCACTTGTCGTAGCCCAATTTGATAGTTGGCATATTTAACTTTGTAGAAACATGACACAAAGCTCTTCTGTTTCATCTCTTCAGTTCTGGGACACCCGGTCTCCCAACCCCATGATGTCTCTGCAGATGCCAGAGAGATGCTACTGTGCAGATGTTGTAAGTGGTTTATGAGAGCTACTGCACGCATTGTAATCCCTGGTGAGTAGATCATTAAATATGTGACTTTTTGTGTTGTTTTCCCCCTCCACCTCCCTGGCTCTTAAATGTAGGTGTACCCCATGGCTGTGGTTGCCACGGCGGACAGAGGCCTCATCGTGTACCAGCTGGAGAACCAGCCCTCTGAGTTTCGCAgAATAGACTCTCCTCTCAAACATCAGGTGACTTTAATCTCCCAGGGAATGTGTTCTACCTCTCTGTAAACATCGAGCCACTTGTTCTGCTAACTTCATGTACAGCCAGATTATTTTCATTTATACACTTGATCAAACGCACATTTCTGCCCCGGTCCTGCAGCAcCGATGTGTTGCCATATTCAAGGACAAGCAGAACAAGCCCACTGGCTTTGCCCTGGGGAGCATTGAGGGCCGAGTGGCCATCCACTACATCAACCCTCCAAACCCGTGAGTGTCTAAAGCGGTCACATTCCTACAAGTGAATGGATTTTTGGATGTCTTGCTGCAGGTGCTTCTTTAATCCGGTGACGTGCAAGCATAGTATGACATGAATGTGTTCCCTGTTCCCACTCAGAGCCAAAGACAACTTCACCTTCAAGTGCCACCGGTCGAATGGAACCAACACAGCCACTCCACAGGACATCTACGCTGTAAGTTCTGCAGAATTTCTCAGACGACGTGAAATAATTGTATCTTCTGTGCTCTTAAATTAGATTGTATGAACGCGTTCTGTTGGAACGGAGACAGTCGACCAGTTTATGTGAcTATTGTCAACCGGTTTGATGCAAATTCTTTTAATAATCCTTTTTGCACAAAGTAGGAACACCTGAGGACTCAGGACAATAGTGATgCATGCCTGGGAATGGGCTAACCAACAATTTAAATACATATAATTTAATGACACTTGTGTCACATCTGCAGCGAAGGAGGTCTGTTAATCGTGTTTCATTTGAGCACAGTcTTCTGAGATCAATATTAATGTGATTCTCATTTTTAAATACACCCAATTATTGTATAATTGTGGCATCCCTTGAATAGCGGCATGATTCCCACTCAAATCTCAGTTGCATTTGTCATATCCACTGATTACAGCTcTTaAAAAATGTTTTTCTACTTCTGTAATTATTCCTCCAGACTCCATCGTTGCAATATAGTGACACtataaatatatatatatatataAAACAAACCGGTTTCCTCAAGTCTCACCaAATGATTTCCCACTGTCCTCCCtTCAGGTCAACGCCATCTCTTTCCATCCCGTCCACGGCACACTGGCGACCGTGGGCTCAGACGGACGCTTCAGCTTCTGGGACAAAGACGCCCGCACCAAGCTGAAGACCTCGGAGCAGCTCGACCAGCCAATCACAGCCTGCTGCTTCAACAGCAACGGCAACATCTTCGCATACGCCTCCAGCTACGACTGGTCAAAGGTAGGCGTCGCACCTTTTCGGTTTTGCCGCCTCACGCCAGCCCGTCTCTCCTTCGTAATAACACCGGGCCCTCGTCTGAATTCGCCAGGGCCACGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCTTGAGGAACGCTGCCGAGGAGCTGAAGCCTCGGAACAAGAAAATGATGAGTTTATTTGGGGCGACCTCTGGGTTCGGAGCAGCGGGGGCCGGTGTCTTTGGAAACGCAACAACAGACAGCCACAATCCCATGAAGGATGTGGAAGTGACTTCCCCTCCAGATGACAGCATCAGCTGTCTGGCTTTCAGCCCCCCCTCCATGCCGGGGAACTTCCTCATCGGAGGATCCTGGGCCAACGATGTCCGGTGCTGGGAGGTTCAGGACAATGGGCAGACGGTCCCCAAAGCCCAgCAGATGCACACGGGTCCAGTGCTGGATGTATGCTGGAGTGACGATGGGAGTAAAGTCTTCACTGCTTCCTCTGACAAAACAGCCAAGATGTGGGATCTTAACAGCAATCAAGCTATGCAGATTGCACAGCATGATGGTCCGATTAAGTCAATCCACTGGATCAAAGCCCCGAACTACAGCTGCATCATGACCGGCAGTTGGGACAAAACACTGAAGTTCTGGGACACCCGGTCTCCCAACCCCATGATGTCTCTGCAGATGCCAGAGAGATGCTACTGTGCAGATGTTGTGTACCCCATGGCTGTGGTTGCCACGGCGGACAGAGGCCTCATCGTGTACCAGCTGGAGAACCAGCCCTCTGAGTTTCGCAgAATAGACTCTCCTCTCAAACATCAGCAcCGATGTGTTGCCATATTCAAGGACAAGCAGAACAAGCCCACTGGCTTTGCCCTGGGGAGCATTGAGGGCCGAGTGGCCATCCACTACATCAACCCTCCAAACCCAGCCAAAGACAACTTCACCTTCAAGTGCCACCGGTCGAATGGAACCAACACAGCCACTCCACAGGACATCTACGCTGTCAACGCCATCTCTTTCCATCCCGTCCACGGCACACTGGCGACCGTGGGCTCAGACGGACGCTTCAGCTTCTGGGACAAAGACGCCCGCACCAAGCTGAAGACCTCGGAGCAGCTCGACCAGCCAATCACAGCCTGCTGCTTCAACAGCAACGGCAACATCTTCGCATACGCCTCCAGCTACGACTGGTCAAAGGGCCACGAGTACTACAACCCCCAGAAAAAGAACTACATCTTCTTGAGGAACGCTGCCGAGGAGCTGAAGCCTCGGAACAAGAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10971	MRNA EXPORT FACTOR AND BUB3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-