Gene detail

Detailed information of HS15542 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS15542	30S RIBOSOMAL PROTEIN S16	chr18	13128023	13130840	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS15542

ATGGTTCATTTATGTGAGTATAAGATGCGAACACTAGAGGCATATCCTGACTGTTcTGATGCTTGAATAAACCTTTGATTTAGagtatgtgtattttgtgaaggttatcacatacaggactgtctcagaaaattagaatattgtgatgaagttctttattttctgtaatgcaattagatattgtgatgaagttctttttttctgttgtatgcaaaaaaaacaaaatgtcatgcattcatcacattacaaatcaactgaaatattgcaagccttttattctgatttattgctgattatggttttacagcaagaaaactcaaatatcctatctctaaatattagaatatcatgaaaagtatactagtagggtattaaacaaatcacttgaattgtctaattaactcgaaacacctgcaagggtttcctgagccttgacaaacactcagctgttataaatttttttttacttggtctgaggaaatattaaaattttatgagatagattttagagttttctttttgcttaagccataatcagcaatattaaagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgttttttaaattgcattacagaaaataaagaactttatcacaatattctaattttctgagacagtcctgtataGCAGAAGCAGCCAGGACTGCTTCCTTACTTAACTTGTATTGCTTCATTGGCAGTGAACAGATTTAGCTTCTCATATGAAGTTAACAATCAACTTCAATTCTTCTCcATTTCACATTGATCAGTCGATGAACACTTAATTTAGAAAATGCCAaagatagtgaaacaatgcccatcacaagagaacacgtctttaaatgtcttgttttatccaacaacagttgaaaatgcaacaatatacaatAAATAACAACACTTTTTTCCCCCTTAATGCTGCAGGTGTAATTGATAAAATTATTGCTAATTATTGTTGATTTATCAACCACATTTTATTTGGGTCTATAATGTACATATACATTCAGTTTACAATGTACATCTAGCAAAAGAAAATTTAAGGGATTAGCTGATTTAATAACTCTGGTAATTTGACAAGAGGCAGTTTCAGGTGTTTTTGATTTTATTTTTATTTCTGTATAGTGAAAATAAAATTAAAATAAATAAGGGTAGACAAAATAATAGAATCTCTCTTAACAGTGTTGCCAAAAATTTAACATTAGAAATAAATATAAACATTTTACAATAAAAGAGAAAAGCAGAATACAAATTTATACATAAAATATGAATACAAAACATAAGGAAGAAGTGAACGTTTCACAACTGCTGCTCCCTTCACTTATTTTCCTTCCATCTTGTTCAAGAAAGTAACTGATTGAACATGGAATCAGAAATTGATGAAACATATGGTTGACAAACAAGATATCAGTCTGTGGTTTCATTTCATGATAAGAATTATGCTTTACTGGAAATTACTTAAACAAGATGGTCAAGATCTCGAAAGTAACAGCTTTTACTGAAGATTGTGCATTTTCAACATTAACAATTACAAGAAACTAATCTAATTTTACATTTAACAATGCTGACTGTGCTCGTTTCCTTCCGCAGCATCACTCCTGCTTAAGAACTACCACGGAGGTTACGTTGTCATCCGATTTGCTCTTGCAGGCCACAAACAAGCTAACAGACCTTTTTATCGAATCGTGGCAGCGTACAACAAAAGGGCAAGAGATGGTAAATATTTAGAGCAGCTTGGTACCTACGACCCCCTGCCCAACATCTACAATGAGAAACTTGTCAGTTTCAACTTCGACCGAATCAAGTACTGGATCGGTTGTGGCGCACATCCTACAAAGCCAGTGGCCAAACTTCTAGGTATGTATTCACTAAATGGCATATTTATTTTAAGGTGGATAATTTTGCTCTTGTCTGCCGTCCTCATAGATGACATGTGCCGTTTACGTTCAGAACGAACATCtacaggactgtctcagaaaattagaatattgtgataaagttctttattttctgtaatgcaattaaaaaaccaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactctaaaatcctatctcacaaaattttaatatttcctcagaccaagtaaaaaaaaaagatttataacagctgagtgtttgtcaaggctcaggaaacccttgcaggtgtttcgagttaattagacaattcaagtgatttgtttaataccctactagtatactttttcatgatattctaatatttagagataggatatttgagttttcttaagctgtaagccataatcagcaataaatcagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttatttatttattgcattacagaaaataaagaacttcatcacaatattctaattttctgagacaatcctgtaATGTATCATTCGGTTCTCCAGAATTCGGCAATGAGGAATTCAAATTAAAAAATGAAGTATCGGTCCAAAAAGATTTTGGCATCTACTGCACAATGTTTCTGCAATAGTTAGTTTGAAAAGTGTGTAAAAGATATTGTCTTCCTCTCtCCCCTGTCTCATTCTGCAGGGTTGGCAGGATTTTTCCCTCTGCACCCAATGACGATAACAGAGTCAGAGCGTCAGAGAGCACAGACAGAGCTGATGGCAACAGAAGATGTTCTGCAGGAGGGACAGAAGGAGGCGGAAGTGATGGTTCATTTATCATCACTCCTGCTTAAGAACTACCACGGAGGTTACGTTGTCATCCGATTTGCTCTTGCAGGCCACAAACAAGCTAACAGACCTTTTTATCGAATCGTGGCAGCGTACAACAAAAGGGCAAGAGATGGTAAATATTTAGAGCAGCTTGGTACCTACGACCCCCTGCCCAACATCTACAATGAGAAACTTGTCAGTTTCAACTTCGACCGAATCAAGTACTGGATCGGTTGTGGCGCACATCCTACAAAGCCAGTGGCCAAACTTCTAGGGTTGGCAGGATTTTTCCCTCTGCACCCAATGACGATAACAGAGTCAGAGCGTCAGAGAGCACAGACAGAGCTGATGGCAACAGAAGATGTTCTGCAGGAGGGACAGAAGGAGGCGGAAGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00886	Ribosomal_S16	Ribosomal protein S16	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000307	Family	Small ribosomal subunit protein bS16	Interproscan
IPR023803	Homologous_superfamily	Small ribosomal subunit protein bS16 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12919	30S RIBOSOMAL PROTEIN S16	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005763	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0015935	Cellular Component	small ribosomal subunit	Interproscan
GO:0032543	Biological Process	mitochondrial translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-