Gene detail

Detailed information of HS15350 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS15350	MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED	chr18	7302029	7306386	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS15350

ATGACCTCTTCAGGCATCACCTCTCCAAGGACGGGTAAGCAGGATCGCCTCAGGAAGTCCTCGCCGTCGTCTCGGGGACATCGAGTCACCGAATACTTCTCTTCTCTCAACAGAAAGGGGCTGTCGTTGTTTAAAGAGATGCTGGCGGGTTGCGGCGCCGGCATGTGCCAGGTCGTCGTCACCACCCCCATGGAGATGCTCAAGATCCAGCTCCAGGACGCAGGCCGAGTCGGTGAGAATCGTGCAACATCCATGTTGTGGAATCCTCCATGTGTGCGACTCAAATCAGTGTTGTGtagggatgagaattgataagattttaacaattcagatgccttatcgattcctgcttatcgattcgattccttattgggcaaggggtgaacaaaagagcacaaacgggtttatttacattaattttctataatgctgcacacaccatatacagtatgtatacatacTAcactgcgcagcgctaacagagagtggcgttaagtggcggaAAAATATAACAGTATCGTTTTTATGGTATTGTATCATGattagggctgtcagcgttaacgcgttaatctatgcgattaatttggccgcgttaacgcactaaaatattttaacgcaattaacgcaagtttttttaaagtttttttacattttttttaaaaaccgcggtattacggtttgacactgtttccgtttttaaaacaatcatttctccgcgaaaataaggagcagaaatcagtttaaactcgtggatgaatcagtcgggtttcctcctgctcctccttcctcccgtctccccctctgatacacagaggaacggaggggcgacgtgtcgggtgacgcggcgcggaaagaacgcgacacacgaaaccttcaacgtgattggtcaatccgtttgtctgtcaacatttcggggggaaaaaaaccaatgaacactcagtaaatcacaaaggacctcccacctcacaggttaggctcatttagcagcctgtcagtcagagaaccagaggacacggcgcgaggacaatgaggctcatttcagagctgagattgttctggaatgtttgatgtataacacgtgggggtgtgtcacatgcaaaagactttaaaaggtgaatttaatttatttagtaaaatgtataaaatgcccccagcctccagagggttaacgtgacatatgtgaatgtcagtcagttaccaaggccactggttctgctgctgttcaatgttaaagatgacaggaccaatggggtttcaatatactttttttttttttactaatctgatgtttcactgaagaaacaatttatcatccacgatattaaatacctcgctggcactttatatgtaggatcctctttgaaaacacagctctgtgtgaagttttgtctttaaaaagaagggaaacacttttaacccttgtgttgccttcgggtcattttgacccgattaaatatttaaccctccccccgcctttgggtcattttgacccgattcaatgtttcaccctcctgttacctttatatttactaacatattttaccctttgggttcaatttgacgccagcaattaaaacctccagaaaattattagaattaatattgttttccaagtttaagtgtgaggcactttatgtttgtttgttgactaccgaaagaacaccgacattaaacattgaatggggtcaaattaacccgaaggcggcaggagggtgtaatattgattcgggtcaaaatgacccgaaggcaacataagggttaaacggtgacatttttttgtttttgtaaaatgtataaaatgagcccagcctccagagggttaacgtgacatatttgaatgtcagtcagttaccaaggccactggttctgctgtttagtgttaaagatgacaggaccaatggggtctcaatatatatatattttttactaatctgatgtttcactgaagaaacaatttatcatccacgatattaaatacctcgctggcactttataggtaggagcctctttgaaaacacagctctgtgtgaagttttgtctttaaaaagaatgaacttttaacttttaattgcgattaattaatcgcaatttcaaaaggtgcgattaattagttaattttttttaatcgattgacagccctaatcatgatatttatggcaggtatggtatagaagatcgtgacaaccaggtagaggcagaacagactcgaggaacagcagagcacaagactgaaagacttgttcacgccaacaacaaaaaaaggaagttggttgacaatattatacacaatattactattattatagtattatagggcccgatcactgacttggtgtcagaatggaggacctatagattatcatacaacgtccaacatcgatgttcgtggaagtcaccacccccgcgcgctcacgctcacctttttcatctctgacccgttttcatgcctgataagcatgtctgctttctccgggaggatacgcgatctctcaggacttattgtgtctccagccgtggagaacactctctcagatggggtggaggatgaacacaaagatatgaggaggtgtacaagacgtgctgtatcctgtgacccagacagactaccagcctctgaaccggtctgactgaacgtcatcagctaaattggatggacattatttatatagtgaaagctggttgacacaatgaaacaaatttggctgacgatcccaaacaatcggttcactgggaaccggttctaaaacagaaccggttctcgatgcccatccctagTGTTGTGTATATTGACTTTTTTTcTTCTTTTTCTTTTAAAAGCAGCCCAGCAGCAGAAGCCGGTCATGATGTCTCCCACCAAGCTCGCGGCCGCCAACGCCGTGCTCCGGCGCGCCTACAACTCCGACGCGGTGGTCTCGGCCCCTCGAGCAGTTTCGGCCACACAGATTGCGAAAGAGCTGTTCCACAAGAAAGGCATCATGGGGCTCTACAAAGGGCTCGGGGCCACGCTGATAAGGTGAACCCGCTGCTCCCTCACGGTCTACTGGGTCGACCAGTTACGACCAAGAACCAGTCAGTCGGGTGTCCAGTCTGACgGGTTTTCTTCTCCCCTTTTTCTTCTTCTAGAGATGTCCCCTTCTCCGTCATCTACTTCCCGTTGTTTGCCAACCTGAACAGCCTCGGCAAACCCAGCGCCGAGGAGGCGTCGCCCGTCTACTGGGCTTTCGTCTCCGGCTGTGCGGCGGGCTCCACtGCCGCGGTGGCTGTGAACCCCTGTGACGGTGAGTTTGAGAGCCAGCTTAAAAGTCCAGGAAAATCTAGCTTTGTCCTGAAAACTGTAGTTCAACATttttattttcctttcttttatttttattttTAAAAGCTCCCCGAAACATAAAACATTGCTTTCTTAAAGGGCTGCGTTGTGTTCAGGGTCATGTGGCATCTAAAATGCTGGTTTATGGACCGGAGCATTTTGACTATTCACAACGTTCTTATCTTCCCAAATTGTTGAATAATGTTCTCGGCATGTTTTGTTTCACTTCCACAAATAACTTCTGAGATCCAACTGGATTAGTTGAGTTATAGCCATTTACTAGTCTTTgTAAAATCTGACTTCCACAGAGATGAATATTTTGTTTTATGGCAATATTTATcagggttcgtacggtcatggaaaacctggaaaagtcatggaattttaaaatgttcatttccaggcctggaaaagtcatggaaaaaacttaaatcataaaagtttgggaagagtcatggaaatgtgttatcacattttaatttaccctgagtttgaaataattaatatgtatttttaaagaaagacgctcaaaatagaagccacattttcatgtttataccgagatttcagtttggtgatggaaatttggtttaaagtcatggaaaaatccattggtcaaaatgtgtaagaactctgATTTATGAATTTGTCAATTTGCTGGGTAGTGAATTAAATATATATTTTTTCATTTTTTtCTCCAGTGGTGAAGACGAGGCTGCAGACGCTGAACAAGGGGCCCAGTGAGGAGACTTACAACGGGGTTGTGGATTGTGTGAGGTAAGACGGCTCGCCCACTCTtcCATAACTACATGTTTATTTATTTATTTTTtTGTGCATGCGTGTGAGAGACTTCAAACACAAACTCCTCCCTCTGCTTCTCCACAGTAAAATAATGCGAAAGGAGGGGCCCGCTGCCTTCCTGAAAGGCGCCGGCTGCCGGGCTCTGGTCATCGCGCCTCTGTTCGGCATCGCTCAGGTCATGTACTTTGCCGGAGTTGGCGAATACATCGTGGACAACACTCCTCTGAACCGCCTGTCGGCGATGACCTCTTCAGGCATCACCTCTCCAAGGACGGGTAAGCAGGATCGCCTCAGGAAGTCCTCGCCGTCGTCTCGGGGACATCGAGTCACCGAATACTTCTCTTCTCTCAACAGAAAGGGGCTGTCGTTGTTTAAAGAGATGCTGGCGGGTTGCGGCGCCGGCATGTGCCAGGTCGTCGTCACCACCCCCATGGAGATGCTCAAGATCCAGCTCCAGGACGCAGGCCGAGTCGAAGCAGCCCAGCAGCAGAAGCCGGTCATGATGTCTCCCACCAAGCTCGCGGCCGCCAACGCCGTGCTCCGGCGCGCCTACAACTCCGACGCGGTGGTCTCGGCCCCTCGAGCAGTTTCGGCCACACAGATTGCGAAAGAGCTGTTCCACAAGAAAGGCATCATGGGGCTCTACAAAGGGCTCGGGGCCACGCTGATAAGAGATGTCCCCTTCTCCGTCATCTACTTCCCGTTGTTTGCCAACCTGAACAGCCTCGGCAAACCCAGCGCCGAGGAGGCGTCGCCCGTCTACTGGGCTTTCGTCTCCGGCTGTGCGGCGGGCTCCACtGCCGCGGTGGCTGTGAACCCCTGTGACGTGGTGAAGACGAGGCTGCAGACGCTGAACAAGGGGCCCAGTGAGGAGACTTACAACGGGGTTGTGGATTGTGTGAGTAAAATAATGCGAAAGGAGGGGCCCGCTGCCTTCCTGAAAGGCGCCGGCTGCCGGGCTCTGGTCATCGCGCCTCTGTTCGGCATCGCTCAGGTCATGTACTTTGCCGGAGTTGGCGAATACATCGTGGACAACACTCCTCTGAACCGCCTGTCGGCG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR051028	Family	Mitochondrial Solute Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45678	MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005313	Molecular Function	L-glutamate transmembrane transporter activity	Interproscan
GO:0006810	Biological Process	transport	Interproscan
GO:0015183	Molecular Function	L-aspartate transmembrane transporter activity	Interproscan
GO:0015810	Biological Process	aspartate transmembrane transport	Interproscan
GO:0015813	Biological Process	L-glutamate transmembrane transport	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:0043490	Biological Process	malate-aspartate shuttle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-