Gene detail

Detailed information of HS14224 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS14224	TRANSCRIPTION FACTOR CP2	chr16	22936091	22945232	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS14224

CACCACTCCCCTAGCAAACGGCTGGTGGTGGTGGTGCCCAACGACGTGATGGCGCCCTCCCGCAGAGGGCTGAGCAGCGAGGACGAGGCcTGGAGGagcTACCTGGAGAACCCGCTGACgGCcGCCACCAAGGCCATGATGAGCATCAACGGGGACGAaGACAGCGCCgcgGCaCTGGGgCTGCTgTACGACTACTACAAGGTCGGTGGGGGGGGGAAGCGGCGCGTTCACAAAATCGTGCTATGATGAAGACGATTTTTTGCATTAATGTGTTTTTTTCCCCCGATTTCAACCTTGTCAGGTTCCCAGAGAGAGAAGATGCTCCTCAAGTGGCGTCAAACCCACAGAGCCCTCCTCCATCGGGCCCGAGAACTGCGGTAGCCTGGAGATGCTGGATTACCACCTCCAGGCACTCAGATCCATGCCCGTCAACCTCTCCCGAaacaacaacaacaacaacaGCGCTGCAGAACATCAGGGCTCCAAGTATGGTGTTGTCAGCCAGGCAGGAGACACCAgaggaggagagggtaataaaggaggaggaggaggaggtggagggggGGCGGCTCGGGCTCTGGTCAAGACCGAGGGCCAGGCGTCCATGGGCGTGTCCTGCTCTGTGGGGGCCTACCGGGAGGAGCCCCGGGAGGAGATGAGGATGGCGTACGAGCAGAACCACTACGACTTGTCCCGCGTCGGCTACCTGAAAGACGAACAGAGGGGAACGCCAGGAAGCACGTACGAGGACGCcggagacggagaggtgagaccgggacgaggggagcccgagactacgggagcccgagactacgggagcccgagactacgggagcccgagactacgggagccctagtctacgtgagcccgggactacgtgagcccgggactacgtgagcccgggactacgggagcccgagactacgggagcccgagactacgggagcccgagactacgggaaccctagtctacgtgagcccgggactacgggagcAGTATCATGATGTATGACGTGTGTTCTTCTTCTTCTTCTCCCACAGACGTACCACAGGAGTCCGTCCTCAGGAGTTGATGAATTCCGTCACAGCCCGCCAACGTAAGTACACAAAATAAATCTAAGACATTAAAGGATAAATTAGGCtttatttttatttatttatttctacatttTGGTCGTTGTTGACACTTTTCAAACCGAGTCTCATGACGGCCCGTTCCTCACTGAACAAGAACTCTCTTCTCACCCCGGCTCACATGCACACACATTCATTTAAAGACTAACATAGCTGGGCTCTGTAGTGTGTTTGATAGGAAAGGGTCAGTGTGTTTGTTGGGGACTATTTTCCGTtgtgtgtgtgtgtgtgtTCATAGAAATGAAGGCacaacggagctttatggcacagaggaaaaagatgtatcaCACATAACAAGTGTCAGTAGATTCACTGATTGTTGGTTATGGTATTTAATAATAATAATAAGAAACATGAAATCAGGCTTTTCATTTAGAAAGTTTTGATAAATAAAAAATGTTTTTAAACAGTTTGTTTCGAGACATTTAAACCCCGTTATTCAGTCTTCTTCTTATGTTCAATTTACTTTAAAAAAAATATAACATTACTTGATATTTacttacaatcatgttacattcacacaccgtagactcagctacagggagcaactcagggttaagtgtcttgctcaaggacacatcgactagggcggggattgaaccaccaaccccctgattgaaagacagacctgctgacctctgacccaGTAGTTTTGAGAAGTAAATAAAAGACAAAACCAGTTTGTTTGGAGCCATTATAACCTCTTCTTGCTGCATCAGTCTTCTTCTCAAAATTCAATATACTTAAAAAATAAATAAAatacctgcatatatatatatatatatatatatatatataatgttctcacagtggcagcttccagtaCTGTCTGGAGGCCCCCATGTCTCTGCGGCCATGGCAGGGAGAAGGACCCATGGCGTACCTGAACCGGGGCCAGTTCTACGCTCTGACCCTGTCCAAGGCCGGCTTCAGGTCCACCCAGCGTCAGCCCAGAGGCAAAGTGCGGGTGAGTGGGCCGACGCCGCCGCGGGGGCCCGATGGGCGTCCATCCGGCGGCTATGAGCAATGCACCATGGGAGGCTCTGAGCTGCAGCGGGACGGTATTGTGCAGGTGAGGGAGGGGCCGAAGTTCACATGGAGGAGGGGAGCGTGGAGCTAGAGGGTTCTACGTTTAGATGGTTGTCGTGTTGCATGAACCCCTCTTGTAATATTGTTTTTTACCGTAACATATCGGGTATGTCTTCGGCTCCCGCTTCAGAGCGTCATCATGGTCGTCTTCGGGGAGGACAAGTGCAGAGACGAGCAGCTGAAGaAtTGGAAaTACTGGCACTCCCGGCAGCACACGGCCAAACAGAGAGTCcTgGACATCGGTGAGAGGAGCGCTCCATTCGCGGTGCCTCCTTGATGGGGTGTTATTTTGAAGGCGGGAAAAACAGGAATAACCCCAGATAGATAGAAAACTTTGCTATTAAATATCACACGTAGAAACAGATATTTAGACGCCTATAAGCTCCATGAGTGAAGAAAGAAAAAAAAAAGGGCGAGAGAGGAACCAGTTGTCAAACCTGGCAGGGGCCTCCAGGAGGATCCTGTCGCGTATCCCGAGGTGTGGAACCCGACTGGATTTGAATAACTGTCGATCCCTTCGGATTCCCACAGGAGCGTCTGTGAACAGTCAGCCAATGGGGTTCATTTGCATAGACGTTGACGGGGAGGAATGGGCGGAGGCCTGGACGGGAGCCACATCCTGTAGCGGCGGCAGCCGACAGGCCTCAACCTGCGGCCGCCAAGAGTCAGAGGAATGAGGCAGCGGGCGTCAGGCGGGTGGGACGGTCTGGGAGCCGGTTCACGGCGGCTCCGTCTCTACGCTCGCGTAGAGCGGAGGATATTTCATCTCCTCATATTTTGCCATTAGAGCCCCTCGaggcagatttgtgtctttattacgccaaaaaaagcttttttaaagttaattcaatgttagattttgctcatgaaactagaattttttgatgggaatcaaaaatatttgccctcaaaAAAACAACCTGCGCTCGTAgaatcggccccttcttttaaaatcacttcttgaaacccgtttttttatagaactgtttttaaatgatgtcgtcctttcatgcCAGATGTGTCTCTGATGATAATAAAATGATAATGTAATGTAGTCTtatatatatatctatatatctatatatatatCTGTGTTGTGTTAAAAACACTCTTCTCTGGTCTCCAGCCGACTACAAGGAGAGCTTCAACACcATCGGCAACgTgGAgGAAATCGCCTACAACGCCgTCTCcTTCACgTGGGACGTCAGCGAAGAAGCTCAGGTACGACCCGGAGGAAGCACTTCCTGTTTCCAGGCCGAGCAGGAAAtcttcttcttcttctttttcttctttctcctccttcttcttctttttcctccttctcatcatcctcctccacctccttcatcttctttctcctcctcctccaccttcttcttcttcgtttgtcttcttcctcccctccctacttcttcttcttcttcttcttcgttcATACGAAACTCAAAGCCACTCGTGAGGAAGATGGCTACCCCCCCCCCCCTTCTCCTCTCTCTTATTGGCTCGTTATCTCAAATGGTGGACACACAGAACTGCGTTAGAGCTACTCAGATTTCACCTTTTGGTTAAGGTGGCCGGTTGGATAAAGACGATTGGcaaacgaggtgtaaacacacacacacacacacacacacacagtgttttgGGCCCAGGAGGCGGTCGAGATGAGAACGATGTAATTGACGTTTCGTGGCTGTTGTGGATAAATATTGACTGTCGGGCGTAAAACTCCATTCCACTGTTTAATTGTTTCTCGTGTGCTCGGTGAGAGACGCTCAGGCAGCgggcggtggcggtggcgggggcggtggcggtggcACTAGGTCATTCCGGTATCACGTGACTCTATTCTATGAATGACTATTCAAACAAAATGTATTTATTTGTTATTATTTTGATTTTACAAAGTGAGAAAAGTGGCCTCAGCCAACAGAATCAGCTGGTGGTCCACCTGTTGGAATTTAGCAGCTTCTGGTAAACGTGAACTTAAACACACACACACAGAGCACTTTGAGCCTACACTTCCCAGAATGCACTCTGCATCCTCTCAGTCGAGACCCTCTTTTCTTCTTCATGTCTTTTCACCTGTAGACGAGCGTCCAGTTCCCCTCGGTTATCGATATCTCGAGTCCTCCTGACGTGGAATCAGGCGCCACCGTTTGTATTTGTGGTGCCAATTATTATTTTTTCGGCCTGGCTCGGCTGTTGCCAAGCAACAGTCCTCCTCCTCGTTGTGATGGGAGACGAGCTGCTTCCGGCTGCACGGCGGAACtgttgctttgtttgtttgtttgttGAGCGGACGGCACCGAACGTACTGGTGTTACGACCTCTTTTTAGGAAGACATCCGAAAGCTCtatgtgcacaacaagtctacacacacacacacacacacgcacatgcacgcgcgcacacacaaaacacacaagcacacacccacctgcacgtgtacacagacacacacacacacacacaagtacacacatgcgcacacataattatgtgcatgcatgcacacacacacacacacaaacacaagcacacacacacacgcacccactcacatgcgcactcctacacacacaagtacacacacacataagttcacgcacacacacaacacttatcctacatacacaacaaacctactacacacactcacactagcagcaacgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgtgtgcgtgtgcgtgtgtgtgtgtcacaggcctcgggctctgcaggctgaggcacgatgccgtTGACGCCGCTCAGTGGGAAAATGAGCTGCTGAGGAATCTCGACCGTTATCCGTCTCGGCCGACCGGTTGCTCGGGCCGTCCGACCCGTTTAACGGGAACCGCCGTCGCAGCTCACGCCGGTCCCGATATTTTGGCACTGCGACGAGTCATGGCGGGAATCTGTTCCaTCATGCAGCCACGAATGTGTGAAGATAACCACGTCACCGCGAGAGCGGTGACACGAGTTCACGCCGCGGTTTAGAAAGACTGAGCAGACCAGAACGGACGTTCTGTTCTCACCCTCAAGAGCTTtTTATGATTTATGATTTATTTATTTTCTCATTATTTAACTCCGGCACAGAGTGATGTGTAGTTCAGCATgtcacatgacatctgttcttccttctggtcacatgacatctgttcttccttctggtcacatgacatctgttcttccttctggtcacatgacatctgttcttccttctggtcacatgacatctgttcttccttctggtcacatgacaCCTGAGTGGAAGCTCATTAGCCGGTGTGTATGATGCGGTGCAGAGAGGTGACGATGGGATGGATTCGTGCTGCTTCTGGCCCGTGAACCGCTGCTGTGGTGACCCGGTGACAAAAGTTATTAATCAATAATACAATTTAATTATCAGTATTTGGCTTCTGTACCAATCCCACTTAAATAAACTCAGTATTTCAACTTTCTTTAAATAATTAGGGGCTGTACTGTATGTTTCTTAGTTTTAGAAAACTAATTCAACCATGTATTCAAAATGTAATCATAAAGTAAGTGATATTCTATATTCCTTATTACCCCACGAGTTTGAGCTTGCATGCTAATTCTGGGTCATGAGCTCAATGTCTCGTGATACAGCTGATTCAATGTAATTATAATAATCCATTATTTCTCATGAAATCATAATTGGATTTTCTTTCAAATTAGTCGAGCTTCTCTCGAAGCCTCGTGGCCGGGAGTCCCTGAtctttctttctttctttctttGGGCAGGCAGTCTCACTGAGGTTAACGTCTCTCTTCCACAAGAGGCCCGAGAACACCGTTAGCTAAACGGAAGGAAAACGCAAATACATCATGAACAGGAATTGAAAAAAATGACAATCATAAAAAAAACCACGAGATAGCGAAGCTTTAAAATCCCGTTTGCAGGCCGTTCCTCGTGAAGGTCACACGCACCGTGACGCGCCGTCGTTCACACTGCTCGCTTTAGGCCCCGCCCTCTAAATAATATGTGTTTTTTAGGTCTTCGTCTCGGCGAACTGTCTGAGCACCGACTTCTCCTCGCAGAAGGGCGTGAAGGGAACGCCGCTGATCATCCAGATCGACACCTACAGCTACAACAGCTGCAGCAGCCGGCCGATCCACAGGGCCTTCACCCAGATCAAGGTCTTCTGCgacaaggtgacgccccagagacacattagatatgtatgtgtgtgtgtgtatatatatgtatgtatatatatgtgtgtatatatacacacatatatatatatatacacacatatatatatatgtgtgtgtatatgtatatatatatatatgtgtgtgtgtatatatatgtatatatacacacatatatatacatgtgtgtgtatatgtatatatatatgtgtgtatatatatatacagtatatatatgtgtgtatgtatatatatatatatgtgtgtatacacacatatatatacacacacatatatatatatatgtgtgtatatatatgtatgtgtgtgtatatatatatatgtgtgtttgtatgtatatatatatacatgtgtgtgtatatatatatgtgtgtgtgtatatatatatatatattatatgtgtgtatgtatatatatgaacggttgtgtatatatatatatatatatgtgtgtgtgtatatatatatatattatatgtgtgtatgtatatatatgaacggttgtgtatatatatatatttctcttcatcctcttgtcttttctgtccctttaactccttccTGTATCTTTGCAGGGCGCTGAGAGGAAGCTTCGCGATGAGGAGAAGAAGCAGCTCAGGAAGAAGATGAAAGGTAAACAAAAAAACATTCTTTTCTTTTTCTTACTTCTTCAGTTTTGCTTAATAATGAAGGATTAACCACATGTCATCTCACCTGGTTAAATAAAGGTTTTTTTTTTAAAAAAGCCAGGGAAAAGTTGTCTTAAAGTCGTGTTGAATCTGCAGCAGATGCTGAGTTCAGGCTCTCTCTCTCCGGTTCAGGGAAACACGGCAGCTTAGGGCAGACGTCTCCCTGCCAGAAGGCTGAGAACACGCTGTTCAAGAGCATGGCGGACCTGGACGCCCAGCCGGTCCTCTTCATTCCCGACGTCTACTTTGGGAACATGCAGAGAGCCGGGCAGGTGAGGGACAGGGACCCCACGTTGacacacaaacaaacacacacacacaGAATGGAGGGGGGTTAACGTCTCCAGTGTCCTTCACGTTGCATTTTCTTCTTCAGGTTTTTGCTTTCAACACCGAGGAGGGCAACAGAGACGGGTGAGTGTCGCACTGTTCTGCCCCCGGTTAAAGTTGAAGTCTTTTTCCCTTTTTGATTGATGATGATGATGAATTGTGTGTGTGTGTCAGAAGTGTTCTGGTGAAGAGGATGTCGTCGTGTGCTGCGGAGGAAGACGTCTGTCCACCTCAACCCAAGAAGTCCAAAGAGGAACTGGAAAGGAAAGGTTGGTAAATGTTGCTTTTGGTCTCCTCCattattattattattattatGAGACTGAATATAATGCCGTGTCTCTTCTGTTGCCTCATCAGTTCTGCTGTATGTGAGGAAGGAGTGTGACGAAGTGTTTGACGCCTTAATGCTGCGCACCCCGACCATGAAGGCATtgatggaggcagtgagtattaaccaagtgttactacacacacacacacacacacacacacccgggtcattaatacaagtggtttagatgGTTTCGATGGTGATGATACGTCTTCACCGCGCGTTGAACATGTTCCGTTTTCTCCACAGATCTCAGAGAAATATGCAGTACCCATTGACAAGATCACCAAAGTTTATGGAAAAAGCAAAAAAGGGTGAGTGAACCAAACTCACGAAGCCCGACTGCCGCCTTCAGCCCTGTGAGGCGCTACAGAGGCACCTCAGGTTTACTCTAGACACGACGTACAGCGGAGGCCGACGGGACCGGGATTAGTTTAGCAGGTGTTTGGTAAGAAGCCGAGGTAAATCTCTCTAAATTTATCCCGTGGGAGACGTGAATGTCTGGTTCTCGTTCACCGGCAGACGTTTTCCACCCCAAACCACACATTTGGAGCTCACAAAGCCACCAAACTTCATGACAAGCCGTCAAAATAGTTTGTaagagccatttagtttgttttggttttgttggacctcccaccaccagggggcgtagtgccactgtcatttaagacagaggccagtataatcaggcggaccactagggccaggtgttgctcgatttgcaggaggaccgttttttggaccttgggagaacaggcgacgatgtgttgtgatttcttttcatattttgggaacagacgaagacaaggaacgcatcttttggtttgtgttggcagccataacatttagaaataaaaaacctttcacatgacaaactggacattgcatctgtttagtacactaaacttctaagcaaccgcagtgaccttAGACAACGGGGTCACTACAACATTGTTGAGGCACTAAAACCGTAAACGACGCGGGATCACCTTAGGGTTCACCCTCTGGGGACCATGCATATGTGTGTACAAATGTAAATGGAAAACACCAAAGAAAACAGATAACGTTATATTACCAATAGATCCCCTAAACGCTACACAATGGCCCTGAGTTATGCTAGCAGCTATCGCGGCTAACGTAACATGCAGATGAACAAACGCCTTCTTAAAGTGTTCCCGTGTGTGGTCTCCTTCAGGATCCTGGTGAACATGGACGACAACgTCATCcAGCAcTACTCCAACGAgGACACCTTCATCCTGGCCATCGAGAGCTCGGCAGAATCTTGGCGCGTCACTCTGTCCGAAATCCACCACTCCCCTAGCAAACGGCTGGTGGTGGTGGTGCCCAACGACGTGATGGCGCCCTCCCGCAGAGGGCTGAGCAGCGAGGACGAGGCcTGGAGGagcTACCTGGAGAACCCGCTGACgGCcGCCACCAAGGCCATGATGAGCATCAACGGGGACGAaGACAGCGCCgcgGCaCTGGGgCTGCTgTACGACTACTACAAGGTTCCCAGAGAGAGAAGATGCTCCTCAAGTGGCGTCAAACCCACAGAGCCCTCCTCCATCGGGCCCGAGAACTGCGGTAGCCTGGAGATGCTGGATTACCACCTCCAGGCACTCAGATCCATGCCCGTCAACCTCTCCCGAaacaacaacaacaacaacaGCGCTGCAGAACATCAGGGCTCCAAGTATGGTGTTGTCAGCCAGGCAGGAGACACCAgaggaggagagggtaataaaggaggaggaggaggaggtggagggggGGCGGCTCGGGCTCTGGTCAAGACCGAGGGCCAGGCGTCCATGGGCGTGTCCTGCTCTGTGGGGGCCTACCGGGAGGAGCCCCGGGAGGAGATGAGGATGGCGTACGAGCAGAACCACTACGACTTGTCCCGCGTCGGCTACCTGAAAGACGAACAGAGGGGAACGCCAGGAAGCACGTACGAGGACGCcggagacggagagACGTACCACAGGAGTCCGTCCTCAGGAGTTGATGAATTCCGTCACAGCCCGCCAACtggcagcttccagtaCTGTCTGGAGGCCCCCATGTCTCTGCGGCCATGGCAGGGAGAAGGACCCATGGCGTACCTGAACCGGGGCCAGTTCTACGCTCTGACCCTGTCCAAGGCCGGCTTCAGGTCCACCCAGCGTCAGCCCAGAGGCAAAGTGCGGGTGAGTGGGCCGACGCCGCCGCGGGGGCCCGATGGGCGTCCATCCGGCGGCTATGAGCAATGCACCATGGGAGGCTCTGAGCTGCAGCGGGACGGTATTGTGCAGAGCGTCATCATGGTCGTCTTCGGGGAGGACAAGTGCAGAGACGAGCAGCTGAAGaAtTGGAAaTACTGGCACTCCCGGCAGCACACGGCCAAACAGAGAGTCcTgGACATCGCCGACTACAAGGAGAGCTTCAACACcATCGGCAACgTgGAgGAAATCGCCTACAACGCCgTCTCcTTCACgTGGGACGTCAGCGAAGAAGCTCAGGTCTTCGTCTCGGCGAACTGTCTGAGCACCGACTTCTCCTCGCAGAAGGGCGTGAAGGGAACGCCGCTGATCATCCAGATCGACACCTACAGCTACAACAGCTGCAGCAGCCGGCCGATCCACAGGGCCTTCACCCAGATCAAGGTCTTCTGCgacaagGGCGCTGAGAGGAAGCTTCGCGATGAGGAGAAGAAGCAGCTCAGGAAGAAGATGAAAGGGAAACACGGCAGCTTAGGGCAGACGTCTCCCTGCCAGAAGGCTGAGAACACGCTGTTCAAGAGCATGGCGGACCTGGACGCCCAGCCGGTCCTCTTCATTCCCGACGTCTACTTTGGGAACATGCAGAGAGCCGGGCAGGTTTTTGCTTTCAACACCGAGGAGGGCAACAGAGACGGAAGTGTTCTGGTGAAGAGGATGTCGTCGTGTGCTGCGGAGGAAGACGTCTGTCCACCTCAACCCAAGAAGTCCAAAGAGGAACTGGAAAGGAAAGTTCTGCTGTATGTGAGGAAGGAGTGTGACGAAGTGTTTGACGCCTTAATGCTGCGCACCCCGACCATGAAGGCATtgatggaggcaATCTCAGAGAAATATGCAGTACCCATTGACAAGATCACCAAAGTTTATGGAAAAAGCAAAAAAGGGATCCTGGTGAACATGGACGACAACgTCATCcAGCAcTACTCCAACGAgGACACCTTCATCCTGGCCATCGAGAGCTCGGCAGAATCTTGGCGCGTCACTCTGTCCGAAATC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04516	CP2	CP2 transcription factor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007604	Domain	CP2 transcription factor	Interproscan
IPR040167	Family	Transcription factor CP2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11037	TRANSCRIPTION FACTOR CP2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007420	Biological Process	brain development	Interproscan
GO:0021915	Biological Process	neural tube development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-