Gene detail

Detailed information of HS13744 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13744	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1	chr16	6058911	6064947	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13744

ATGGTTAGCTCCCCGGCTAACTCCCGTAGACTTAGCGTTAGCGGCGGTGTGACTGCgCGTCCTGTGGGCTCGGCTCCGTCTGACAACGCCCGCCCGGCTCAGAGCAAACAGGCACGGCTCTGCTTCTCTTTTTTTTGTTGGTGCGTGTGAATGTAAACACCAATTTCTGACTTATAAAACATAATAATAATGACGTGATTTCATAAATAAGTTTGCAGCTTGGGTTGAACATTAAATACCAGGTTTGAGGGCAATACTATTTATTTATTGGCGTATCcGCATAACTGTTGGCACGTTTGTTCAGGTGCAGACTATCAAGTCCGCAAGAGTGACTTTCAGGAGCAATGTAATGTTGGTTTAAAACGTGTGTGTATATATTAAACAAATAACAAACGAAATCCAGATTATATTCTACGTTAAAATGGAAGAAACTGTAATATTACAAATGTAAGGGTGTGGATGTTGTAGTTTTTAACGGCTGTTTTtTCTCCTTTCGCAGGCTTTAGTCATGGAGTCCATCATCTCCAAGCTGCACTTAAAATTTGCAGAGAAAACGTGGAATGAAACCTTTCAGCTCGTCCGAAGATGCATGGTAAAAAAAATAAcAAAAtTCCACATGAACACCACCTCTGTTTTCATCAGCCCCCCTCCCTTTTCTTTTCTTTTTCtTTcTAAATACCACAATGCAATTCATGAATATCACATGAAAGTCCTGAGGTTATTTGAAGGTATGTCCATGTGTTAGTTATATGCAGGGGAAGGGTGATGTTTGCTTAAAGTTATTAGACCAATTACTGGATGACTTCTCTTATTATGATGCTGTGCTGCAAACCAGGAACTGGTGTGGTAATGCACTAGGCATGAGATCATCTAACCCGCAACACACTATGTCTTTGTTGTTGGACCATTTTgAGCACGGACGGTAACTTGGACTCTtTTCAACCACTTGGTACATTGTATAAATCGAGAGCCTTATTGAAAGAAAACAAGGTTTTTAGTTTTTTTCATcGTTGCCTTCTGGCCTTGGCTTTATTGCTATAATACGTTTGACACTGTCTTGTTTTTGGCAAGACAATCACCATTTGTCCTTTCAGAAAGATGCTCCATCAGCAGATGTGTCAAGCTACAAGATGAGGGCCAAAACACGCATAAAGCTTCACATATTCCCACGTCTGCTCCGCTCCAACAAAAGGCTGCGAAGTGTAATAATGTGTATTTAGCGCAGCGATAATAACGTGTGTGCTCGAGGCTGTGAGAGGGTGTGTTCGTTTTCTTTAGATTTGCCATGGGTGGAGCGGCCGGATAGATAATGCTTTTGGATTAATACAAAGTGGAGCTCGGCAGTGGTCAGTCTCTGGAGTCTCTCGAAGAAGCGTGATtagcTAGTGGTCTGAAGTGATGTGTGGTCCAGAGGGGGGACGAGGCAGCGAGGGCTGTGGACCATGCTGGACTATGCGGATGTATCTTCACATTCCTGCAGGTTGTCTTTTTTAAAAACACATCGATTCCAAAGTTCAAAGCAACCAAATGTCCCTCTATTCCATTGCACTGCAGTGGTGTAATGGGATGGGCTGGGAGGACCAACGACTGTTTACACAAGGGTGACTTTGCCACACAACCGGTCCATTGTTTGCTTGTTTCGTCCCTTTGTATAGGACAAACCCAAAGATAAATCCAAACCCTGTATGCCGCTGGTTCGATCACTGGAAAGGCTCCAGGAAGTGGTTCATGGTAACCCAACGACATCGTATTCAGAATGTATTTTAGTACACGTATGCCATGTAGCGTGTGAGTAAGTTGGTCTGTTGGTTTCAGTGTCCTCTATGAGCACCATGAGGTCCCGTCTGGAAGTGATTGCCAAACAACAAGGGTATAAAGTCCTTTTTTAAAATGTTTTTTTAATCAACAAGAGCCTCATTACGGAGCTTATTTTTGCTCGTCATATAACGCGGTGGCACGCATTGTCCTCCCACGTCGCCTCTCCGTCCTCCCTAGAATGGGCTTTCACGTCACCGAGGCCACGTGCTACCTGACAGGCGATCTGTTCTACCTGGAGGTGGTGCTGCTGCCGTGCGGCGGGGCGGAGGAGGTGAAGGTGGCTCCTCACGGAGGTGCCCCCGCGGTAAGAGGACTCCGTTACCGTGCACATTGCTTAGTCTCCCGTCGCTCTGCaCCATGATCACAAATGAGATTGTCTTGCAGCCCAGCGAGTCCTTCCTCCGGCTGCTGAGGTAAGCGTCTGAGCGGCGGTAAATAACACATGATGTCGTTTTGCCTGCCAGACGAAGAGGACCGTGCTATTTAAATGATTGTTTTTCATGCCGATGGGACTGCTTTGCTTTTCATTGTGCAGGGCCAAATTGTTTGTCGAGTTCTCCGTGAAGTTGGCCGACCTCTTCGCCCAGTACCACATCCCCGGGGACATGTAACCCTCCTCTTAAAACGTGTGATTCAACCCTTTATAATGTGGGGCCTCATGCAGTCATTTAACTACGTGTTTTGTTGTTGTGTTTCAGTGAAATGCAACTGAAATTGTTTGCATCTCTGCAATTTCTCGGGAAAGACTTGCAGCAAATATCACAACTGCCGAGGTAGGCGACATAAAAATACAAATGTCCCAAAAACATGTTCAAGTAAGAGCAGCAACGAACATCTCGTTTATTTATTGATTGCTTTGTGATATTAGACtccagcttgtgaaatattaggacttgctgcttgttttcatcatattatctagtaaattaaagatgtaagctttcgactgctgtggataaaatgtttatattgagttttgggaaaatgtgacgtgatattttttgactattccgactgattgagaaaataatcctcagattaataatggaaataattatttgttgctaccctaattaccttcgcattgaaaatgcggaaggttatgttttgatcgccatttatttatttgtatgcgtgttattcgcataactaaaaaagtattgaaccgaatcgcatgaaatttggtgggttgattggttattatccggggaccatttgattagattttgggatcgatcgggtcaaaggtcaaggtcatgaaaaggtcaacatcttcttttcaccatagctcggtcaaatgttacccaattggcatgcaactaatgccaaaatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcgctctaccgagtgcccgttctagtttaaaatgtgAATCAGTGCAGATTTGGTTTGTTTCTTAATTCAGCGTGCCAACGGACTCGGACCCCCGAGTGGACTTGATTAACAATGGCAGAATGGGGTATCTGATCCCTGGAAAAGAAGGTATACGTAACAAGGAGAAGCAAAAACACAAGTTATGCACACGTCTGTTTCTTCAGTTCATATCAGCCGTATCCCTTCAGATTGCCCCCTGACGATCCAGTTCTATACCACTCCCACTGATGAGATGAAGACCTCAGACATACGTAAGATGCCAAAGCTCCTGTCAAGCAAAATGAATGCATGAGCCTCATCCACCATCTTTAAAGGGCCTTAACATTTATAATTTCTCCCCTCTTCTTCTTGAAGACATGGCCGCTACAGAGGCGCTCGTCCAGGCCGCCCAGGTGGCCGTCAGCGTCAGCGAAGTGACTCGCGAGCTTCAGATGGCCTCTGTGCTCCaACAGCCTCCACAGCTGGATCCCCACGGGTGACATGTTGCTCCTTTAAAAAAAAATCTCCTACGCAACCGGATACTCTTCTCGTCTGTTTTGCATCCCCGCAGGGAAGAGTCTGTGTCGGTGCGGGTGGTGTTGACGTGGTAACACTTGTTGTCGTGTTGGTACAGTCGCCCCGTGTTCCTGCCGCCGAGCGAGGCGCCGCACGAGACGCTTCCCGCCTGCTTCCTCCTCAAACTGCAGCCGGCGATGCCGATGACGTCGTCTTTTCTGAGCAAGCTGAGTCCAATTACAGGTCGGTGAGAAGATGACAGAGAATTCCTGAAATGGTATAATGCCTGTTCAACGATGTAAATGACTTTGTTTTGGAAAGAATATTATAAATTCAGATTATTATTGTTATTTGATTGACTGTCCCATAAGCATCACCCCCTCTCATGCTCTGTTGATCCCCCTCTGGTTTATCTTCCAGATGTGGCCATACCAGATGTTGACCTGCAGTGGGCACCCTTACCCAAGCTTCTGATGGGACGTTCACCGAGTTCAAACGGCaCTGGAGAGCCACGaGATGAGCAGGATAACATTTTTACAGTGGTATGAATGTACTTGatcgttcaaaagtgtggggtcactcagacaatttcgtgttttccatgaaaactcacacttttatttataaatttaattgcaaaatgaatagaaaatatagtcaagacattgacaaggttagaaataatgatttttattttaaatattagttttgttcctcaaacttgtcgctcaaaggaaggacagttttatagcttctctcagcagcataactgttttcagctgcgctcacataaatagggttgtaaacgtttttctacccctccgttagtcttctaaggcgataacacaatgtaccacaagaacacaggagacgggcctctagacacctctgtagagacttctttaaacaccagagaatactcatttaccacattaactatgtaagagtaagagtgtatttatgaataatttaacgttttcttcattacaaaaaactgggcttttctttgaaaaattcggacatttccaagtgaccctaaacttttgaacggtagtgtATAATATGACTGACTGACTGACTCaCgtGTGTGTGAAGCtCAAGAAGAAAGCTAACTGCGTTCACTTGAAGCTAAATAATTCAAGCTGTACTCAACGACATGAAAGGAATCCCTGGTCTTCCCAGCCTCTTCCCGGTGGTGTGATGCACCGTTATGTCCTCGCCGGAGCTGCATGGGAGGGGCCCGCCCAGAGAGCCACGGTGGTGGaCAGCATCCCCTTCACCCACCCGGCCCACGTGCCGGCCCTACTGGCGCTGCTCCGGCACCAGTGTGCCATCAACGCaCTGCTGAGcAGCTGCATCGCCTCTCCGTGCGACGGAGCAGGTACAGGAGACGCTTCCTTTGAAATAAAAAAAATACAAATTGGCACGAAGTCGTGCAGAAGTTGGCGGAAAGAGAAAAAAAGCGACGTGTTGGTTTGCTGATGGATTCTGCTTCCAGGTTTGGTTTGCGACCTGCACTTGGAAGTCCTTCCGGAGTCCGAGACCAGCTTCTCCGTGACCTTCCCCCGACCCGGCACGGACTCGCTCGCTGTTTGTGAGCATTTCAGAATCCACGACAAAGGGCCTCGTTTATCCGATGGGTTTGGGATTTATTTTTTTATCCCGCGGCGCTGTATCATTTTTTAAGATAACTGCAATGTAATGACACGAAACAAAAGCTGACTCGTGTGgTTTTTTTTTTGATGCTTTCTTCTCCTTTTTTTCTCCCCTCGCCACAGTGCTGGTGAACGTCCGCGATTCTAACCGGATCACCTGCACTTTGTTCGGATCAGACACCGGGGGTGCCTCCACGGAGGAATACCTTTCCACTGTCATGCAGAGGTACGGAGGAAGACTGCTCCAGGCCTTCATCAGGGGGGAGAATCTGATTTGAGATGATGATTAGCAGCAGGACGCAGCCTGATCTCTCCCGACGCTGCCGCAGGTCCATGTCCGTCCCCGTGGCCTTGAAGGAGCTCCACGGCAAGCTGGAGGAGATGCCCGTCTCGGCTCCGCCTTCACCCGGCCGCCCGGCCGCCGCGGAGGCCGAGAGCGACCACACGGCTCCCTCGTCTCCCTCGGTCACCACCGTGACcgacggcgacggcgcgacgccgacgacggcgTTCTCCCAGAGTGCCGCTGCGCCAGAGGACGGCGTAGCTGTAACCGCGCCCGCATCCAAATCGGAGCTCCCTCCCGAAATACACCCCAGTCCCGCTGTCGACCCCGACCCGCCGGCCCCCGTGGATGTTTTCACACCGGAGGACCAAATGGTTAGCTCCCCGGCTAACTCCCGTAGACTTAGCGTTAGCGGCGGTGTGACTGCgCGTCCTGTGGGCTCGGCTCCGTCTGACAACGCCCGCCCGGCTCAGAGCAAACAGGCTTTAGTCATGGAGTCCATCATCTCCAAGCTGCACTTAAAATTTGCAGAGAAAACGTGGAATGAAACCTTTCAGCTCGTCCGAAGATGCATGGACAAACCCAAAGATAAATCCAAACCCTGTATGCCGCTGGTTCGATCACTGGAAAGGCTCCAGGAAGTGGTTCATGTGTCCTCTATGAGCACCATGAGGTCCCGTCTGGAAGTGATTGCCAAACAACAAGGAATGGGCTTTCACGTCACCGAGGCCACGTGCTACCTGACAGGCGATCTGTTCTACCTGGAGGTGGTGCTGCTGCCGTGCGGCGGGGCGGAGGAGGTGAAGGTGGCTCCTCACGGAGGTGCCCCCGCGCCCAGCGAGTCCTTCCTCCGGCTGCTGAGGGCCAAATTGTTTGTCGAGTTCTCCGTGAAGTTGGCCGACCTCTTCGCCCAGTACCACATCCCCGGGGACATTGAAATGCAACTGAAATTGTTTGCATCTCTGCAATTTCTCGGGAAAGACTTGCAGCAAATATCACAACTGCCGAGCGTGCCAACGGACTCGGACCCCCGAGTGGACTTGATTAACAATGGCAGAATGGGGTATCTGATCCCTGGAAAAGAAGATTGCCCCCTGACGATCCAGTTCTATACCACTCCCACTGATGAGATGAAGACCTCAGACATACACATGGCCGCTACAGAGGCGCTCGTCCAGGCCGCCCAGGTGGCCGTCAGCGTCAGCGAAGTGACTCGCGAGCTTCAGATGGCCTCTGTGCTCCaACAGCCTCCACAGCTGGATCCCCACGGTCGCCCCGTGTTCCTGCCGCCGAGCGAGGCGCCGCACGAGACGCTTCCCGCCTGCTTCCTCCTCAAACTGCAGCCGGCGATGCCGATGACGTCGTCTTTTCTGAGCAAGCTGAGTCCAATTACAGATGTGGCCATACCAGATGTTGACCTGCAGTGGGCACCCTTACCCAAGCTTCTGATGGGACGTTCACCGAGTTCAAACGGCaCTGGAGAGCCACGaGATGAGCAGGATAACATTTTTACAGTGCCTCTTCCCGGTGGTGTGATGCACCGTTATGTCCTCGCCGGAGCTGCATGGGAGGGGCCCGCCCAGAGAGCCACGGTGGTGGaCAGCATCCCCTTCACCCACCCGGCCCACGTGCCGGCCCTACTGGCGCTGCTCCGGCACCAGTGTGCCATCAACGCaCTGCTGAGcAGCTGCATCGCCTCTCCGTGCGACGGAGCAGGTTTGGTTTGCGACCTGCACTTGGAAGTCCTTCCGGAGTCCGAGACCAGCTTCTCCGTGACCTTCCCCCGACCCGGCACGGACTCGCTCGCTGTTTTGCTGGTGAACGTCCGCGATTCTAACCGGATCACCTGCACTTTGTTCGGATCAGACACCGGGGGTGCCTCCACGGAGGAATACCTTTCCACTGTCATGCAGAGGTCCATGTCCGTCCCCGTGGCCTTGAAGGAGCTCCACGGCAAGCTGGAGGAGATGCCCGTCTCGGCTCCGCCTTCACCCGGCCGCCCGGCCGCCGCGGAGGCCGAGAGCGACCACACGGCTCCCTCGTCTCCCTCGGTCACCACCGTGACcgacggcgacggcgcgacgccgacgacggcgTTCTCCCAGAGTGCCGCTGCGCCAGAGGACGGCGTAGCTGTAACCGCGCCCGCATCCAAATCGGAGCTCCCTCCCGAAATACACCCCAGTCCCGCTGTCGACCCCGACCCGCCGGCCCCCGTGGATGTTTTCACACCGGAGGACCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10744	Med1	Mediator of RNA polymerase II transcription subunit 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019680	Domain	Mediator complex, subunit Med1	Interproscan
IPR051999	Family	Mediator complex subunit 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12881	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan
GO:0042809	Molecular Function	nuclear vitamin D receptor binding	Interproscan
GO:0042974	Molecular Function	nuclear retinoic acid receptor binding	Interproscan
GO:0046966	Molecular Function	nuclear thyroid hormone receptor binding	Interproscan
GO:0097067	Biological Process	cellular response to thyroid hormone stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-