Gene detail

Detailed information of HS13737 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13737	DNA REPAIR PROTEIN RAD51 HOMOLOG 2	chr16	5676458	5677525	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13737

ATGAAACCGGTAAAAAAAGACGCCAACATGGCGACGATAAAACTGAAGCGAGCCGGCGTTTCAAGCGAGATGTGCGAGCAACTCAAGCGACATCGAGTAGAAAGCTGCAAGGACCTGTTGTCGCTGAGCTCCGTGGAGGTGATGCACGCCGCGGGGCTGAGCTACCGGAGAGCCTCtGAGCTGCAGCGGACGGTGAGCAGAGCCGTGGCCCCGcCCGTCACCACGGCCCTGGAGCTGTGGAGCAAACACTCCTGCTTCTCCACGTCGTTGCCCGCCCTGGACCGACTGCTGAGGGGCGGCCTGCCCCGCGGGGCCCTCACGGAGGTGGTGGGGCCCTCCGGCTGCGGGAAGACGCAGCTGTGCCTGATGCTCAGCGTCCTGGCCACTCTGCCGAAGAGCCACGGCGGCCAGGACAGCGCCGTGATCTACATCGACACCGAGTCCGCGTTCTCCGCCGAGAGGCTGGTGGAGATCGCGCAGAGCCGGTTCCCGGACCACTTCGGCTGCAAGGAGCGGGTCCTGCAGATGGCCGGGCGGGTGCACCTCTACCGGGAGCTCACCTGTCGGCATGTCCTCAACAGGCTGGAGAGACTGGAAGAGGACATCATCTCGACCGGAGCGGGGCTCGTCATCCTGGACTCCGTGGCCTCCGTGGCGAGGAAGGAGTTCGACACGACGTTGCCCGGCAACCTGATGCGCCGCAACGACATGCTGGGCCACGAGGCCTCCACCCTCAAGTACCTGGCCCACCAGTTCGACATCCCCGTGGTCCTCACCAACCAGGTGACGACGCACGTGACGGGTCAAGGGTCGGCGGGGGATTCCGCGCTCGTGACCGCGGCTCTGGGGACCGCGTGGAGTCACAGTGTCAACACGCGGCTCATCGTgCAGTACGCGGACGCGCGCCAGAGACAGATGCTGATCGCCAAGTCGCCCGTGGCTCCGCGCGCGCTGCTGAACTACACCGTTGAGAAGCAGGGCATCTGTATGGATGGAGAGGAGAGTCTGGAGGTCCTGTGCGAGGACACGGATCCAGGCCTCCAACCAATCAGGGTGCAGATGGAGTTCATGAAACCGGTAAAAAAAGACGCCAACATGGCGACGATAAAACTGAAGCGAGCCGGCGTTTCAAGCGAGATGTGCGAGCAACTCAAGCGACATCGAGTAGAAAGCTGCAAGGACCTGTTGTCGCTGAGCTCCGTGGAGGTGATGCACGCCGCGGGGCTGAGCTACCGGAGAGCCTCtGAGCTGCAGCGGACGGTGAGCAGAGCCGTGGCCCCGcCCGTCACCACGGCCCTGGAGCTGTGGAGCAAACACTCCTGCTTCTCCACGTCGTTGCCCGCCCTGGACCGACTGCTGAGGGGCGGCCTGCCCCGCGGGGCCCTCACGGAGGTGGTGGGGCCCTCCGGCTGCGGGAAGACGCAGCTGTGCCTGATGCTCAGCGTCCTGGCCACTCTGCCGAAGAGCCACGGCGGCCAGGACAGCGCCGTGATCTACATCGACACCGAGTCCGCGTTCTCCGCCGAGAGGCTGGTGGAGATCGCGCAGAGCCGGTTCCCGGACCACTTCGGCTGCAAGGAGCGGGTCCTGCAGATGGCCGGGCGGGTGCACCTCTACCGGGAGCTCACCTGTCGGCATGTCCTCAACAGGCTGGAGAGACTGGAAGAGGACATCATCTCGACCGGAGCGGGGCTCGTCATCCTGGACTCCGTGGCCTCCGTGGCGAGGAAGGAGTTCGACACGACGTTGCCCGGCAACCTGATGCGCCGCAACGACATGCTGGGCCACGAGGCCTCCACCCTCAAGTACCTGGCCCACCAGTTCGACATCCCCGTGGTCCTCACCAACCAGGTGACGACGCACGTGACGGGTCAAGGGTCGGCGGGGGATTCCGCGCTCGTGACCGCGGCTCTGGGGACCGCGTGGAGTCACAGTGTCAACACGCGGCTCATCGTgCAGTACGCGGACGCGCGCCAGAGACAGATGCTGATCGCCAAGTCGCCCGTGGCTCCGCGCGCGCTGCTGAACTACACCGTTGAGAAGCAGGGCATCTGTATGGATGGAGAGGAGAGTCTGGAGGTCCTGTGCGAGGACACGGATCCAGGCCTCCAACCAATCAGGGTGCAGATGGAGTTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08423	Rad51	Rad51	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR013632	Domain	DNA recombination and repair protein Rad51-like, C-terminal	Interproscan
IPR016467	Family	DNA recombination and repair protein, RecA-like	Interproscan
IPR020588	Domain	DNA recombination and repair protein RecA-like, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030548	Family	DNA repair protein RAD51 homologue 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46456	DNA REPAIR PROTEIN RAD51 HOMOLOG 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000400	Molecular Function	four-way junction DNA binding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005657	Cellular Component	replication fork	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0008094	Molecular Function	ATP-dependent activity, acting on DNA	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0033063	Cellular Component	Rad51B-Rad51C-Rad51D-XRCC2 complex	Interproscan
GO:0140664	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-