Gene detail

Detailed information of HS13654 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13654	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER	chr16	2616253	2623253	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13654

CCTCCCGGGGGGAAAGGGGGTATacaacaacaacaacaacaacaacaacaGGTTGACGGCAGCTGAGGTGGAGTCACCGTGAACCGTCCCTGACAGCAGGCCGGTTATAAACGGGAGGTTGTTGGGTCACGACAACGAGAAAAGCGGAGAGAAACGCGGTTAGAGGGGCATTGCCAAGCTAACCGACGAACGCTAGCTTACACCGTTACCATGACTAACTTTACATCGTAAAGCAGAACGGCTTTACGTTTGAGAAGCCAGCCGCTTCTTTTTTTAAGTGTGTTTAATTATAAGTTaAAAAAAAAAAAAAATGCGGCAGATTATATTACATGCTAAGGTACCAGAGCACCCCCCCCAAAAACAAAGGCTCACACCCCGCGGGTTTGTTATTTGCTTTACGGCTATGCGCGTGACGTTAACTGTCATGATTCTGAGCTGCGTGACCGTAGCAACgGGGGGGGGGGGGGGCTGCTAACCAGAGGGGAACCCCTAGATTATTTAGTTTTAGCTTCCGCTGCTGAAATCTCGCCGTCTCACCTCGGCGGTGCGAATCCCCACAACCCCTCTTCGACCAGGCAGCTCCGGCTCCTTCGGACATGAAGTTGCGGGTTCTATTCCGGAATCGAGAAAAGCCGACGGCAGCGGTGCACTGCCATGTTGTCGTCCGCGCGCCAGGCGAAGAGAGACCCCCCCCCCGACTGAGGCTCTAAATTAAACGGGATAACAAACCACAGCGGTCCACGGGCTTTGCGGACGCCATTTTCTGCACCGCCGTCATTTCCCTTTTGGGCGGAACTCAAGGGCGTTGTGCGGTGCAGCAAAGATCGTGTATTTGGAGAtAgATGTATCATTCGCGATCTTTTTTTGTGTAGTTTTGTAGTTTCTGTCCCGCatcagaatcagaaacgtttatttgccgagtacgttttacagacaaatttgaggtgaatgatgcataacaattcactttgccatacaataagacaatacaaatataaaaataatgaacatagtgcactgatcgagaaTAATTTAATATAATCTAGTTAAATTTCAAACCTACTGACACAATTTAAAACCATAACTACCGGTTTTTTTACAACAGAACTACAAACGACTCAACCGAACTACAGAAACGTTTGATTACGTCACTAAACAACGACAGACTTGACACGTAGAAATATATATTTCTTTACTTTTTGTTGAAAAGTAAAATATATTTAACACTTGTACTCGGAGGTTGTCTACGATTTTATGTCGGCAATAACAACATCAACTTTATTCCGTAAAATGGATTTTACTGTAAAAAATAATTGCATCAGACGTTCTGAAAGGACCCCATTGTGGGAGTCACGCGAGGAGCAAACGCCGTTTTTTCTTTTACATCTGCCAGCAAAAAAATTAATATACAACCGACATCTTGTGCTAAATATATTTGGTTTTAAACCCACACAACGCTAATTATACACAATTTAATGTTAATAACCGATTGTTGGAAAAGAGAAATAGCATTGATCAGGCATTCTCCGTGGTCGCCTTTTTCAATCCCTCTTTTCATTCAAGATGGCGGGTGACGAGTTTGGTACAACGCTTGGTCAGCCTCATcTGGCCCGACAAGACCTCCGTTCTCTTGTAAGTGTCCGTTTCACGATGTTTCGACCAAAGAAAAGAGTTGCGTGTGTTTATCTCTAGCCGTTGGTTTTGCCCAAATTACGTCACCAACGGCCAACGTTCGTGACGGTTAAcggcagccggcgccgcgccgccgcctcccggcacatgacggcaggccgcggccgcggcGGAGCGCGCACGCGACTACGGTTTTTTATtTTTTATATTTAACGTTAACGTCACGCGGATTGTCCTCGCAATTAAACGGTGTTAACGGTTCCGAACCGAACGAACCGTTTGATACGTGTGATGTGTGTATTTACGCCGACGTGATTGTCGCCATCTTTGTTCCATGTCAGTTGGCATAAAGTAAAATCTAAATAAATGAACATTTGATGAATACGTGATTATCAGTGCTGTAAATTATATTTAGAATATATTTAAAATGTTATCAGCAGATAATAAAGTAAACTATAGTGCTTATTTAAGTATCAAGTTCAAGCATGCTTCCTGtaattatttatttatttatattttcatgtaATGTAAAGCAGAGCAATGGAGATGGATGTACACATGTTTAAGCCTTTATTGTAGGAGCACAAAGACATAAAGTAAAGATGAGAAGATAATTAATACATAATAAGGTGCAGACACCTAGAATACCAATATATGTTAAAATTGAAGCTATATTAGAGCAATTAAAGGACAATGTTGGGAGGTAAAGTGGCAGTGAGTTAGTCTAGTGTTATGTGTACAAAGGAGTAATGTGGTGAGATAATATATTATAGTATTTATATGTTTAGTTTGGGTGCAAAACACAAACGACAGTGCTGGCTTTTACTTGCAGAGTCGGTCTCTACGTCGCCTGTCTTTGTTTCTATTCACCTGGTGGATTAAAGGGAtgttcagtgtgtgttcagtgtgtgttcagtgtgtgtgtTGAGCCCTAATGTGAGTCCTCTCGGCAGAACGTGTCCACCTTGACGCCTCTCTCCCGAGAGATCATCAGCAGACAGGCCACCATCAATATCGGTACGTAAGACGTCGGGCAATTATTGATCGGCAGAGGAGATTAGGCTGAGTTTTGACTCCCCCGTCTCCCCCCACCCACCCCCGTCTCCCCCCAGGCACCATCGGTCATGTGGCCCACGGGAAGTCCACGGTGGTGAAGGCCATCTCCGGCGTTCACACCGTCAGGTTCAAGAACGAGCTGGAGAGGAACATCACCATCAAGCTGGGATATGCTAACGCGAAGGTGAGAGGCACCGGGACGTCTCCCTCCCCTCAACTAGAAGGGCGAGGCCTCTTTTTACTTTTTTTAAAGTCCTTAAAAAGGACTCTATTTAAAAAAAAATCGTTTGCAATGTGCTTTTTATTTTAAAGACACTCGGTACAGAATTATTTGAAACTAAATTGAAAAAGAcaggattcgtgcggtcatggaaaacctggaaaagtcatgacgatttaaatttgtttattttcatgcctggaaaagtcctgaggaaaaaaaatccccaacgttttagaaaattcatagttatattcatatgtgcatttacgatgagttttaactcattaatatgccttaacaaatataagtcggcattcgctctttcatactcgcagcgcacatttttcgcgctgcaagtgaacgcaccttaactgaaatgacatgcatgtttattcttttattcaaactattgtgtctcattcatttgagtcatttaaggttatatactgtattcttttgaattctctttgttagtttaaagttgacatgttatcactttttcatgaatgcaccgaaatttaaaaaaatgtttgatcatgaaaatttggtttaaagtcttggaaaaAATAAACCGCAGAGAATCCTAATGGGGCTTAAACTTTTGTCATTTTTACATTCCTGTTCTCTCGTTTCATATCTGTCTCTTATTTTGAAAAACATAAAGAGGAAATGCATTCAAAGGGACTCGTCCGTGTTTCAGGTCTATAAGCTGGACGACCCCAGCTGTCCCCGGCCAGAGTGCTACCGGTCGTGTGGCAGCAGCACTCCGGACGAGTTCCTCTCCGACATCCCCGGCACCAAGGGCAACTTCAAACTGGTCCGGTgagacgagagagagaataaaagagaaagagaataaaagagagagagagaCACACGTCAGTATAGGTTTCCCTGTACAAATATATATTTTTCTCACCGATGGGActtcttctcctcctcctcctcctcctcTCAGACACGTGTCCTTCGTGGACTGCCCCGGTCACGACATTTTGATGGCGACCATGTTGAACGGCGCCGCCGTCATGGACGCCGCCCTCCTGCTCATCGGTGAGTCCGTGTCCCTCGCCGCCGCCTCCTCCGGTGTAACTCTGCCGAGGTCTGACTGTTGCTTCTCGTCTCCGCCGGCCAGCGGGTAACGAGTCGTGTCCTCAGCCCCAGACGTCGGAGCACCTGGCGGCCATCGAGATCATGAAGCTGAAGCACATCCTGATCCTGCAGAACAAGATCGACCTGGTGAAGGAGAGCCAGGCCAAGGAGCAGTACGAGCAGATCCTCGCCTTCGTGCAGGGTGAGCGCTCCCACGTCGATGCACCTCCTTTTGAAAGAGGGAAACCACAAACTGATTTGGTTTTGATGACGTCATATCTCAATAATAATTAAGCTACGGCTTCTGTTGCGTAATCTCCGTCGAGGTCGGACTGGAGTCCTCAACCACCTCTTTGAAAGATGGCTGAGGAGTGTTGGCTCTCCTCCAAcGTGTGAACTTTATAAACAGAAGACGCACGTTTTATCGTGTGATACGATGAAGCCCACGGCGAGTCGGGAGATCTCCCTCCATCCATCTGGAGCCTCGTTCAGGCTGTTCCCAGATCAGCTGTCTGACGAGAATAAGATGGAAATGAAGCGTTGCTCTATATTTTTCAAATTCCCTGAGTAATAACATTTTCGTTTTAAGTACTTCAAAATTCTTCGATTTTTTTTGTTTGTATTTTAGACGCTCTTTTTTATTTTACGCCCACGATGTAATGTGGCATTTAAATGGGTTTCGTTTTGACTCTGTAACGGTGATGCTGAAAAATAGATTTAACAAGTACTTTAAAATTCttagatattttgtaatttatttagtatttttgagtatttttttatttattatGCCCACGATGTAATGTGGCATTTAAATGGGTTTAGTTTTGAATCTAAATTGATGTGATGCAGAAAAAAGTATTTTTTCAAATTCCTTGAGTAAACACATTTTTTAAGCACTTTCAGATTCCAAGAtattttttaatttctttattattttagattttatttttattttttaCGCCACGATGTAATGTAGCATTTAAATGAATTAAATGGGTTTAGTTCTGACAGATAAGTCttattttattattattatcttattactcagttattCCATGAAACAATCAGTTACTCCTTAGTTGTTTGTATTttaactcttgtgttgccttcgggtcattttgacccgaatcaatattacaccctcccccagccttcggattaatttgaccccattcaatgtttaatgtcggtgttctttcggcagtcaacaaacaaacataaagtgcctcacacttaaacttggaaaacaatattaattctaataattttctggaggtttaaattgctggcgtcaaatttaacacaaagggtaaaatatgttagtaaatataaagttaacaggagggtgaaacattgaatcgggtcaaaatgacccataggcggggggagggtgtaatattgattcgggtcaaaatgacccgaaggcaacacaagggttaagaacaaatattgaaACCTATTTCAGCCGGGTCCCCAACGCGACTCGCGTTGCCGTCAAGGAACCCGTCTGCTCTCTGTAACTCTCGCCTCCTCGTCTtGACGCTTGTCCTCAGGCACGGTGGCCGAGGGCGCCCCCATCATTCCCATCTCCGCGCAGCTGAAGTACAACATCGAGGTGGTCTGCGAGTACATCGTGAAGAAGATCCCGGTGCCCATCAGAGACTTCATCTCCGAGCCGCGGCTCATCGGTGAGGAAGTCCCGCGCCGCTCGTCTGCTCCCCGTTTGGGTTTTTAACACGGCGCGTTTTCAGTCATCAGGTCGTTCGACGTCAACAAGCCGGGCTGCGAGGTGGACGACCTGAAAGGGGGCGTGGCCGGAGGGAGCATCCTGAAGGGCGTCCTCAAGGTGACGTGGGGCGGACAACGAGCGTTTATATTTTAAACACCAAGAGAAACAAATTGATGACATTTGGCCGATGCAATAACCTCGTCCTCTCTCTCCTCCTCCAGGTGGGCCAGGAGATCGAGGTGCGACCCGGTATCGTGTCCAAAGACAACGAGGGGAAGCTGATGTGCAAACCCATCTTCTCCAAGATCGTCTCTCTGTTCGCCGAGCACAACGACCTGCAGTACGCTGCCCCTGGTGGCCTCATAGGTACGTACagggagagggagagagaggagagagagagggagagagagggagacacagagaaagagatagagacagatgcacagagaaagggagagagatacaaggacagatggagagagataaagacacagagagagagagagatggagagagagtcaaagacagacagacagacagagggagagagacagagacaaacacacagcccccccccccctcATCGACCCCTCCTGTGTGCAGGTGTGGGCACTAAGATCGACCCCACGCTGTGCCGcGCGGACCGTATGGTCGGTCAGGTGCTGGGCGCCGTCGGCGCGCTGCCGGAGATCTTCACCGAGCTGGAGATaTCCTACTTCCTGCTGCGGCGGCTGCTGGGCGTCCGCACGGAGGGCGACAAGAAGGCCGCCAAGGTAAGGGCTCACGGCGCCGCCCACGCGTCCCCACGACGACGTGGAACACGGAGCCTGAACGCCTCGCGTCTCCCTTCAGGTCCAGAAGCTCTCCAAGAACGAGGTGCTGATGGTCAACATCGGCTCGCTGTCGACGGGCGGCCGCGTCAGCGCCGTGAAGGCCGACCTCGCCAAGATCAACCTCACCAACCCCGTCTGCACGGAGGTCGGGGAGAAGATCGCcCTGAGCCGCCGCGTtGAGAAGCACTGGCGGTGAGGAGtGGTCATTATATATTCATTAAACGTTATTATACTATTTATATATAGTCTGGGTCGAGACGTCTGTTAGGTTCATGGTATAATGGCTTGGACAAAATGATtGAAACACCTGCTGGGTATACATGGTATAATGGCTTGTCTGATTGGCTCCTCCTCTTTTTTGTTTCTCAGTCTGATTGGATGGGGGCAGATCAGGAGGGGCGTGACCATCACACCAACATTGGACGACGACCCTCCCGGGGGGAAAGGGGGTATacaacaacaacaacaacaacaacaacaGGTTGACGGCAGGATGGCGGGTGACGAGTTTGGTACAACGCTTGGTCAGCCTCATcTGGCCCGACAAGACCTCCGTTCTCTTAACGTGTCCACCTTGACGCCTCTCTCCCGAGAGATCATCAGCAGACAGGCCACCATCAATATCGGCACCATCGGTCATGTGGCCCACGGGAAGTCCACGGTGGTGAAGGCCATCTCCGGCGTTCACACCGTCAGGTTCAAGAACGAGCTGGAGAGGAACATCACCATCAAGCTGGGATATGCTAACGCGAAGGTCTATAAGCTGGACGACCCCAGCTGTCCCCGGCCAGAGTGCTACCGGTCGTGTGGCAGCAGCACTCCGGACGAGTTCCTCTCCGACATCCCCGGCACCAAGGGCAACTTCAAACTGGTCCGACACGTGTCCTTCGTGGACTGCCCCGGTCACGACATTTTGATGGCGACCATGTTGAACGGCGCCGCCGTCATGGACGCCGCCCTCCTGCTCATCGCGGGTAACGAGTCGTGTCCTCAGCCCCAGACGTCGGAGCACCTGGCGGCCATCGAGATCATGAAGCTGAAGCACATCCTGATCCTGCAGAACAAGATCGACCTGGTGAAGGAGAGCCAGGCCAAGGAGCAGTACGAGCAGATCCTCGCCTTCGTGCAGGGCACGGTGGCCGAGGGCGCCCCCATCATTCCCATCTCCGCGCAGCTGAAGTACAACATCGAGGTGGTCTGCGAGTACATCGTGAAGAAGATCCCGGTGCCCATCAGAGACTTCATCTCCGAGCCGCGGCTCATCGTCATCAGGTCGTTCGACGTCAACAAGCCGGGCTGCGAGGTGGACGACCTGAAAGGGGGCGTGGCCGGAGGGAGCATCCTGAAGGGCGTCCTCAAGGTGGGCCAGGAGATCGAGGTGCGACCCGGTATCGTGTCCAAAGACAACGAGGGGAAGCTGATGTGCAAACCCATCTTCTCCAAGATCGTCTCTCTGTTCGCCGAGCACAACGACCTGCAGTACGCTGCCCCTGGTGGCCTCATAGGTGTGGGCACTAAGATCGACCCCACGCTGTGCCGcGCGGACCGTATGGTCGGTCAGGTGCTGGGCGCCGTCGGCGCGCTGCCGGAGATCTTCACCGAGCTGGAGATaTCCTACTTCCTGCTGCGGCGGCTGCTGGGCGTCCGCACGGAGGGCGACAAGAAGGCCGCCAAGGTCCAGAAGCTCTCCAAGAACGAGGTGCTGATGGTCAACATCGGCTCGCTGTCGACGGGCGGCCGCGTCAGCGCCGTGAAGGCCGACCTCGCCAAGATCAACCTCACCAACCCCGTCTGCACGGAGGTCGGGGAGAAGATCGCcCTGAGCCGCCGCGTtGAGAAGCACTGGCGTCTGATTGGATGGGGGCAGATCAGGAGGGGCGTGACCATCACACCAACATTGGACGACGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF03144	GTP_EFTU_D2	Elongation factor Tu domain 2	Domain	Interproscan
PF09173	eIF2_C	Initiation factor eIF2 gamma, C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000795	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR004161	Domain	Translation elongation factor EFTu-like, domain 2	Interproscan
IPR009000	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR009001	Homologous_superfamily	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	Interproscan
IPR015256	Domain	Initiation factor eIF2 gamma, C-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR044127	Domain	Initiation factor eIF2 gamma, domain 2	Interproscan
IPR044128	Domain	Initiation factor eIF2 gamma, GTP-binding domain	Interproscan
IPR050543	Family	Eukaryotic Initiation Factor 2 Gamma Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42854	EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000049	Molecular Function	tRNA binding	Interproscan
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0005850	Cellular Component	eukaryotic translation initiation factor 2 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-