Gene detail

Detailed information of HS13585 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13585	GLIAL CELLS MISSING RELATED/GLIDE	chr16	660166	665022	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13585

GACACAAAGCAGTTTGACTCGTTCCAGGAGTGGACAGACGGTTACGTCCGATACATCTACAGCGGTGAGAAACAGCTTCTGTCCAACCGCCGATCACCTCACTGATTATTGATTACTGGTGACTGGTGGTTGGTGGTGACCTGTGAGTGGTGGTCTTGTGTCCCCAGCTGAGGACAAGCCGGGCCAGCGCCACCTGTCGGGCTGGGCCATGAGGAACACCAACAACCACAACTGTCAGATCCTGAAGAAGTCGTGTCTGGGCGTGGTGCTGTGCTCACGGGGCTGCAGCCCGGCGGGCCTGAGGCCGGCCATCTGCGACAAGGCCCGGGGCAAGCAGCAGAGTGAGGCCTGCACCAGATACACCGCAtacaccacgtacaccacctacaccacctacaccacctacatcacatacaccacctacaccacctacaccacatacaccacatacaccacctacatcacctacaccacatacaccacatacaccacctacaccacctacatcacatacaccacatacaccacctacaccacctacaccacatacaccacataccacctacaccacctacaccacctacacacataatacacacgtacaccacctacataccacacaccacatcacacaccacatacaccacctacaccacatactccacctacacattacctacaccacatacaccactaacacacaccacctgcatcacatacaccacatacacacatacaccacatacaccacctacaccacatacatcacatacaccacatacaccacatacaccacatacaccacatacaccacatacaccacatacatcacatacaccacctacaccacatacaccacatacaccacctacaccacatacaccacctacaccacctacatcacatacatacaccacctacatcacatacaccacctacaccacatacaccacataccaccacatacaccacctacaccaccacctacaccacatacaccacctacaccacatacaccacctacatcacatacaccacatacaccacatacaccacctacatcacatacaccacacctacaccacctacatcacatacaccacatacaccacatacaccacctacatcacatacatcacatacaccacctacatcacatacaccacctacatcacatacatcacatacaccaccaacaccacatacaccacctacatcacatacaccacctacatcacatacaccacatacaccacatacaccacatgcatcacatacaccacctgcaccacctacaccacatacaccacatacaccacatacaccacatacaccacctacaccacatacaccacatacaccacctacaccacctacaccacctacaccacatacacctacaccacatacaccacctacaccacatacaccacctacaccacctacaccacatacaccacctacaccacctacaccacctacaccacatacaccacctacaccacatacatcacatacacaccacctacatcacatacaccacctacaccacctacaccacatacaccacctacatcacctacaccacatacaccacctacaccacctacaccacatacaccacctgcaccacatacatcacctacatcacatacaccacatacaccacccacaccacgtacaccacctacatcacatacaccacctacaccacatacaccacccacaccatgcacacagcatacaccacctacaccacctacaccatacaccatacaccaccacacaccacaccaccacgtacaccacctacatcacatacaccacctacaccacatacaccacccacaccatgcacacagcatacaccacctacaccacctacaccacgtacacaccctacaccacctacatcacatacaccacctacactatctgcaccacctacatcacatataccacctacaccacatacaccacccacaccacgtacacagcatacacaaactacactacctgcaccacctataccacccgcaccacatacaccacatacaccaactacaccacccgcaccacccgcaccacatacaccacatacaccaactacaccacccgcaccgcatacaccacctacaccaactgcaccacgtacaccaactacaccacccgcaccacatacaccacctacaccacgtacaccacatacaccacctacactgcctacaccacctacaccatctgcaccacctacaccGCTTTCCACTGCCCTCCACCTGTTCCCACCCTTCACCTGTCCTCCACCCGCTCCACCTGACGGGGCTCATTGTGTTTCAGAGAAGCTGTGTCCGAGCTGCGGCGCCGGCCTGGAGCTGCTGCCGTGTCGCGGTCACAGCGGTTACCCCGTCACCAACTTCTGGAGGGTGGATGGAAAGGCCATCTTCTTCCAGGTGTGCTCCTCGACCTTcagagacatgagacaagagaccggagacaagagacaagaaacatgagacaagagacaagagactgagacaagagacaggagacaagagacagagacaagagaccagagacatgagacagagacatgagacaagagacaagcgacatgagacatgggcaagagacatgagacaagagacagaggcaagagacaagagacagagacatgagacagagacaagagacatgagacaagagacagagacaagagacatgagacaagatacatgagacagagacaagagacagagacatgagacatgagacaagagacatgagacagagacaagagacagagacagagacaagagacagatacaagagacagagacaagagacatgagacaagagacaatagacaagagacagagacaagagacagagacatgagacaagagacatgagacagagacaagagacagatacaagagacagagacaagagacatgagacaagagacatgagacaatagacaagagacaagagacagagacaagagacagatacaagagacatgagacaagagacaagagacagagacaagagacatgagacaagagacatgagacaatagacaatagacaagagacagagacatgagacatgagacaagagacaagagacagagacaagcgacagacatgagacagagacatgagacaagagacagagacaagagacagacatgagacagagacatgagacaagagacaagagacagagacaagagacagacaagagacatgagacatgagacaagagacaagagacatgagacaagagacatgagacaagagacatgagacaagagacatgagacagagacaagagacagagacaagagacatgagacaagagacatgagacaagagacatgagacaagagacatgagacaagagacatgagacaagagacagagacaagagacatgagacaagagacatgagacaagagacatgagagagaCGTGAGACAAGTGAGACGTGAGTCTTGTATTTTATTGACtgttgttgttgttgttgttgttgttgtCAGGCTAAAGGGGTCCACGATCATCCCAGACCAGAGTCCAAGTCGGAGACCGAAGCCAGAAGGAGCTCGGTGAAGAGACGAGTCAACTCGCCGCCGTTCACGCCCAAGAGACGCCTCGTGGACACGCAGGTCGACAACGTAAACAACAACAGCTGGAtgttgctgttgttgttgttgtttactgatttgtttgtttgttgttTCCGGGTTCAGGCTCTGGGCCCGGCCCTCGTCTCCTGTGTCGATCCATCAGACAGAATCTCCTTCATTGAGCCCAACTTCCCGCCGCATTACCCAGCATTCCAGAGCCCAGAGCCCTACTACAACCCCCACAATGCACTAGGAGAGGCCCCACCCACACTGCAGAAACCAGCCAATCCCAGGCTCTACATGGGCCGGCCCGGCTACGAGTTCCAGGGATACTTGACCTCGCCTTCATATCCCATGACGGCTGACCTCTGTGACCCAAGGTCAGCCTCCCGAACCAGATCCAGACCACGACAGAGCAGTCTATACCGGTCTGATCCAGATGAGGGTAAACCTTGACAGTCCAGACTGGTTTGATCTGGATCCTGGTTTCTGTGCAGGGTGGCTCCGGTCCTGGGctcctcctcatcctccacctcctcgtcggctcctttctcctccccctgcgcctcctTCGATTCCCAGACCAAGGCTCCTGCAGGCTGGAAGGAGCTTCTGAAGAGCTCCGCCCCCTACAGCGACAACCACCACTACTACAGCGCAGAGTACCCGTGCCGCTACCCCAGCAACGCTCCTGGGTCCCCTGCCGCATTGCAGACCATCATCACCACGACAACCAAGGTGAGTCCAGTTCACCAGGAGGGTCCAGACCTCCAGCTGTGATCTCAGGAGCCTGCTCGCTTCTTATTGGCTGGACTAGCAGATCGTAAGACATCTTAATGCTTCATCTGCTTCTGGTTTCTTTGTAGACTGAACATGTGGTTTGGTAGGCCAGGCGTTCTGGTCCTCCTCAGGTGTCCTACCAGCCGTGTAACACCTGTTCTGGTCCTCCTCAGGTGTCCTACCAGCCGTGTCCGAAGCCTCCTGCGGCGCTCCCTTCCTACCAGTCCTGTGCTCCTCCTAAAGCTCCAGGCCTCCCCGGTTGCTCCGCCCTGCTGGAGGATCCCTCCTCTTCCTCATACTCCACCGAGGTGAAGGTGACGGAGGAGTCGGGTGGAGTCATCAAGTCTCTGTCGTTCCAGCCCGAACCTCTGCAGACCAAAACAGAGCGGTGCGATGGCTACGACTACCGCTACCCCACCTACCCCACCTCGTACCGCTACGACGAGTACGACACAAAGCAGTTTGACTCGTTCCAGGAGTGGACAGACGGTTACGTCCGATACATCTACAGCGCTGAGGACAAGCCGGGCCAGCGCCACCTGTCGGGCTGGGCCATGAGGAACACCAACAACCACAACTGTCAGATCCTGAAGAAGTCGTGTCTGGGCGTGGTGCTGTGCTCACGGGGCTGCAGCCCGGCGGGCCTGAGGCCGGCCATCTGCGACAAGGCCCGGGGCAAGCAGCAGAAGAAGCTGTGTCCGAGCTGCGGCGCCGGCCTGGAGCTGCTGCCGTGTCGCGGTCACAGCGGTTACCCCGTCACCAACTTCTGGAGGGTGGATGGAAAGGCCATCTTCTTCCAGGCTAAAGGGGTCCACGATCATCCCAGACCAGAGTCCAAGTCGGAGACCGAAGCCAGAAGGAGCTCGGTGAAGAGACGAGTCAACTCGCCGCCGTTCACGCCCAAGAGACGCCTCGTGGACACGCAGGCTCTGGGCCCGGCCCTCGTCTCCTGTGTCGATCCATCAGACAGAATCTCCTTCATTGAGCCCAACTTCCCGCCGCATTACCCAGCATTCCAGAGCCCAGAGCCCTACTACAACCCCCACAATGCACTAGGAGAGGCCCCACCCACACTGCAGAAACCAGCCAATCCCAGGCTCTACATGGGCCGGCCCGGCTACGAGTTCCAGGGATACTTGACCTCGCCTTCATATCCCATGACGGCTGACCTCTGTGACCCAAGGGTGGCTCCGGTCCTGGGctcctcctcatcctccacctcctcgtcggctcctttctcctccccctgcgcctcctTCGATTCCCAGACCAAGGCTCCTGCAGGCTGGAAGGAGCTTCTGAAGAGCTCCGCCCCCTACAGCGACAACCACCACTACTACAGCGCAGAGTACCCGTGCCGCTACCCCAGCAACGCTCCTGGGTCCCCTGCCGCATTGCAGACCATCATCACCACGACAACCAAGGTGAGTCCAGTTCACCAGGCCAGGCGTTCTGGTCCTCCTCAGGTGTCCTACCAGCCGTGTAACACCTGTTCTGGTCCTCCTCAGGTGTCCTACCAGCCGTGTCCGAAGCCTCCTGCGGCGCTCCCTTCCTACCAGTCCTGTGCTCCTCCTAAAGCTCCAGGCCTCCCCGGTTGCTCCGCCCTGCTGGAGGATCCCTCCTCTTCCTCATACTCCACCGAGGTGAAGGTGACGGAGGAGTCGGGTGGAGTCATCAAGTCTCTGTCGTTCCAGCCCGAACCTCTGCAGACCAAAACAGAGCGGTGCGATGGCTACGACTACCGCTACCCCACCTACCCCACCTCGTACCGCTACGACGAGTAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03615	GCM	GCM motif protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003902	Domain	Transcription regulator GCM domain	Interproscan
IPR036115	Homologous_superfamily	GCM domain superfamily	Interproscan
IPR039791	Family	Chorion-specific transcription factor GCM	Interproscan
IPR043020	Homologous_superfamily	GCM domain, large subdomain	Interproscan
IPR043021	Homologous_superfamily	GCM, small domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12414	GLIAL CELLS MISSING RELATED/GLIDE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0042063	Biological Process	gliogenesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-