Gene detail

Detailed information of HS13561 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13561	DENSITY-REGULATED PROTEIN HOMOLOG	chr15	23275614	23279521	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13561

ATGGCTACTACCGAGATGGAATCTGCTCCTTTAGAAAGCAAACCGGAACATCGGAAAGGTCACGCTGACTCAAAGTACCCCCTGAAAGTGCTTTACTGTGGAGGTACAGAAACGACTCCCGACACATTTAACAACGACACGCCTGTGAAGACGGCAGGACATCTGTTTCTCACGTTTCGTTGACTAAACAATTACTGATTAATCGAGGGAGAAAAGAGCAAAAATAATCAGCCGTATATTGTATTTCTATGATAGTACTATTAAATACAGAAAACACTAAGCAGTATTACTTCATCACGTATAATATTCTGGTGTACATGTCCCGAGATCCCAGTTCTATGTACCTCTCATCAGTATAATATATGTGTACGTCTCTATTTCTCTGTACTGTGTGCAACATCTGAATATCTGTTTGTTTCTTTGCAGTTTGCTCTCTGCCGACGGAGGTACGTTATAGGATGTTCTCTTCCTCACTAAAAAGCATCGGCAAATATCTGATTTGTGACATATTCAGCTTTATTGGCCACGTACCTTTACTTCATGCAAGATTTAAAATAAAGTTGCTTTTACACGGTAGTAAAACTGTTTCCAGGGAAAATAGAAAAAAGACACGGGGCTTAAAACGAGGACGACAAAGCCGACACAAAACAAACACGCAACATTCTGTAAATACACACGGTGTCCGTACGCCTGTGTGTGACTGTTGAAGATGTTCTTGTGTCTGCAGTACTGCGAGTACATGCCGGAGCCAGCCAAATGTCGGCACTGGCTTGAGAAGAACTTTCCAGATGTGTTTGCCAGGATGACTGTAGGTGAGTACCATTTAAGATTTTATCCAAAGAGatatagatatatatatatcccgatataagtatatatttatttatatatctatttatttatatagatatTcAAAAAACATCTGAGTGGAAAGTCCTTAAGCATAAAACAAGAGAAGTTGATCCGCAAAAATTATTTTATCTAAATATATTTATTTATCTAAATATTCATGTTTCAGTGGAAAGTCCTTAAGCTAATTTATTTGATCAAAAGTcTtgtgtatatatgtatatatgtatatattagggctgtcaatcgatgaaaaaaatttatctaattaatcgcacattttgaaattcattaatcgcgattaaaagtttgttccttctttttaaagaccaaacttgacacagagctgtgttttcaaagaggctcctacctataaagtgccagcgagggatttaatattgtggatgataaattgtttcttcagtgaaacatcagattagtaaaagaaaagaagtatattgagaccccattggtcctgtcatctttaccactgaacagcagcagaaccagtggccttggtgactgactgacattcacatatgtcacgttaaccctctggaggcggggctcattctttcgataaaaaaaaagaaagtaaattcaccttttaaaggcgttttcatatgacacacccccacgtgttctacatcaaacattccagaacaatctcagctctattcaatgaggctcattgtcctcgtgcggtgttctctgctctctgactgacaggctgctaatgagcctcacctgtgaggtgggaggtcctttgtgatttactgaatgttcattggttgttttttcgcaaaatgttgacagacaaacggattgaccaatcacggtgaaggtttcgtgtgacgaggtctttccgcgccgcgtcacccgacacgatatatacatgtatgtatgtatgtatatatatatatatattagggctgtcagcgttaacgcgttaatctatgcaattaatttggccacgttaacgcactaacatattttaacgcaattaacgcaaattgtttttttttttttttttaaaccgcggcagtacggtttgacactgtttccgtttttaaaacaattatttctccgcgaaaataaggatcataaatcagtttaactggtggatgaatcagtcgggtttcctcctgctcctccttcctcccgtctccacctctgacacacagaggaacggagggcgacgtgtcgggggacgcggcgcggaaagaactcgacacacgaaaccttcaccgtgattggtcaatccgtttgtctgtcaacattttggggaaaaaacaaccaatgaacactcagtaaatcacaaaggacctcccacctcacaggtgaggctcattagcagcctgtcagtcagagagcagagaacacggcgccaggacaatgaggctcatttcagagctgagattgttctggaatgtttgatgtataacacgtgggggtgtgtcacatgcaaaagactttaaacggtgaatttaatttattttgtaaaatgtataaaatgcccccagcctccagagggtcacgtgacatatgtgaatgtcagtcagttaccaaggccactggttctgctgttcagtggtaaagatgtcaggaccaatggggtctcaatatacttctttttttttactaatctgatgtttcactgaagaaacaatttatcatccacgatattaaataccttgctggcactttataggtaggagcctctttgaaaacacagctctgtgtcaagttttgtctttaaaaagaaggaaaacacttttaatcgcgattaattaatcgcaatttcaaaatgtgcaattaattagttaattttttttaatcgattgacagccctagtatttatatatgtatgtatgtatatatatatTTAAATATTCCCGATCAGTTTAACCCTCTCCCCTCTGACCTCCAGGCCCTTTAGCCAATGTGCCCAATCAGGACCTCGGCCCTGGAGACGCGCCCCCTGGTGGCGAGGAGGAGGAAAAAAAGAAACAGAAGAGAGGTACGTGGGGGCCAAATGTTTACCTTTTTTAAATAAATAATATTATTACGGGTTACCATATTAGTTGTATTAGAGTATCCATGTTTGGTTTCATGAAAATAACTATACTTTAAGACTTTAATCGGGCTgtttttgtgttttttaccttttcaaggcgggagaggtcagatcaaacagaaaaagaagagcgtgccTCAGAAAATCACAATAGCAAAAATCCCAAGAGCCAAGAAGAAATACGTCACAAGGGTGTGCGGCATGGCAACATTTGGTAAAGAGTTTATTTAATCTGTGTTTCACTGCCTCTTCTTCACGCTGTATCCTCCTGACGTGAATCCCTCGTTGACTCTTTTGCAGACATCGAACTCAAAGAGGCTCAGCGGTTCTTCGCCCAGAAGTTCTCCTGCGGCGCCTCCGTGACGGCGGAGGATGAAATCATCATTCAGGGAGATTTTACAGACGACATCATCGACGTCATTCAAGAGAAGTGGCCCGAGGTGAGCCGGCTGGCTTTTTAATGGGTCATCTTTTGTTTGTTTTCTTCTCTTTCGCCGCCAAACTTCCAAAGCTGGACCTGAATTTGAGTTTGAAGCTCTGTCTTCAAACATGGGAACTTTTCATTTAAAAGAGTTCACTGTTaaaaagtgtctagtcatttccttaaacggctgatctctgtagtttgtaatcaaaGAAACGGGGACTATTTTCAGTGGTGGATTAATCCGCAATTCTGGGCTCCATTTTTAAGCCTGAGGTGAGCTGGCTGACATCTAAATGTTTTTTTTGCTCTTCAAACTCCCCCGGATGAGGCCGAGCTGTGAATCCGTCACTGCGCACAGACTTTGAAGATCTGTGTCTTCAAACATGGAACTTTTTATTTTAAAGTCATTTCCTAGAACAGCTGGTCGCTGTAGAAACGAGGATTAATCCACTTTTCTGGCCTCTATTTTAAGTATTTGAGGATAATTACGACGTTACATTCTCTGTGTTCCAGGTGGACGACGAGAGCATCGACGATCTGGGCGAAGTCAAGAAGATGGCTACTACCGAGATGGAATCTGCTCCTTTAGAAAGCAAACCGGAACATCGGAAAGGTCACGCTGACTCAAAGTACCCCCTGAAAGTGCTTTACTGTGGAGTTTGCTCTCTGCCGACGGAGTACTGCGAGTACATGCCGGAGCCAGCCAAATGTCGGCACTGGCTTGAGAAGAACTTTCCAGATGTGTTTGCCAGGATGACTGTAGGCCCTTTAGCCAATGTGCCCAATCAGGACCTCGGCCCTGGAGACGCGCCCCCTGGTGGCGAGGAGGAGGAAAAAAAGAAACAGAAGAGAGcttttcaaggcgggagaggtcagatcaaacagaaaaagaagagcgtgccTCAGAAAATCACAATAGCAAAAATCCCAAGAGCCAAGAAGAAATACGTCACAAGGGTGTGCGGCATGGCAACATTTGACATCGAACTCAAAGAGGCTCAGCGGTTCTTCGCCCAGAAGTTCTCCTGCGGCGCCTCCGTGACGGCGGAGGATGAAATCATCATTCAGGGAGATTTTACAGACGACATCATCGACGTCATTCAAGAGAAGTGGCCCGAGGTGGACGACGAGAGCATCGACGATCTGGGCGAAGTCAAGAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01253	SUI1	Translation initiation factor SUI1	Domain	Interproscan
PF21023	DENR_N	DENR, N-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001950	Domain	SUI1 domain	Interproscan
IPR005873	Family	DENR, eukaryotes	Interproscan
IPR036877	Homologous_superfamily	SUI1 domain superfamily	Interproscan
IPR046447	Domain	DENR, C-terminal domain	Interproscan
IPR048517	Domain	DENR, N-terminal domain	Interproscan
IPR050318	Family	DENR/SUI1 Translation Initiation Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12789	DENSITY-REGULATED PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001731	Biological Process	formation of translation preinitiation complex	Interproscan
GO:0002188	Biological Process	translation reinitiation	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003743	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413	Biological Process	translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-