Gene detail

Detailed information of HS13269 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13269	G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER	chr15	16852763	16855318	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13269

ATGAACTCCACGGCAGCGCATGCGGGGAGATTTCAACCGCCCACCATCCCGGCGATTATGTTCATTTTCGGGGTGGTGGGGAACGTCATCGCGATCGTGGTTCTGCGGATATCACGAAAGGAACAGAAGGAAACAACTTTTTACACCCTGGTGTGTGGcTTGGCGGTCACGGACCTGCTGGGCACGCTGCTGGCCAGTCCCGTCACCATCGCGACCTACGTGAAGGGCGCGTGGCCCGGCGGCGAGCCCCTGTGCCAGTACACCGGCTTCATTCTGCTCTTCTTCTTCTTGGTGCAGCTGTGCATTGTGTTCGCGATGTCAGTGGAGAGGTACTTGGCAATAAACCACGCGTACTTCTACAACGAGTACGTCAACCAAAAGCTCGCCGCGCTCACCCTTTTGGCCATTTACATGTCCAACATCGTGTTCTGCGCGCTGCCCAGTGTGGGGTTCGGGAAGGTGACGCGCCAGATGCCGGGCACGTGGTGCTTCATCGACTGGAAGAACAACCAGACGACGGTGGCGACTTTTAATTTGATGTACGCGGGCGTGAACTCGGTGATCGTGCTCGCCACCATCATATGCAACGTGATGGTGTGCGCGGCGCTGATCCTGATGCACAAGCGGTTCATCCGACGCACGTCTCTGGGCGCCGAcCAGAGGCGCtTGTCGGACCTGCGGCGCAGGCGCAGTTTCGGACGGTTGGCTGGAGCGGAGATCCAGATGGTGATCCTGCTGATAGCGACCTCGGCGGTGGTTCTCATCTGCTCCATACCGCTAGTGGTGAGTGTGTGTCACGTGAACACGAGTCTGATTTGCACAAAAAGTCCATCTTTACGCATGACACCAAAAAGAAAACGCAATCAGAATCAGCTTTATGTGtgactccggttccacttacaaggaatttacaaatgtacaaataattgaatacatctcaaaacagagattgaagacaacataaaagcaacatgtatgtacaataacaacaacaGGGACACATATGTTCACCAGAAAGTAATGGAAATAATAAATAATGATCGTGCGGGGTTTTTAACCTCATGGATGACAACACGCATGATAAGTTTACTTATTACATTTAGCTATCAGACCTTCGTGTCCTGTTCTAGATCATTTTGGTAATGACGCGTTATTTTTTTAGTGACTTCATTCAACACAGCATGTTCAAAGATGTCGCCTCCGCATGTATGTGCTTTAGAAACTCTCCAGATGTCAcGTGAAGTCTGACCGTTGGCTCGTTTGAGCTCAACAGACCTGCGCGTGTCAGAGGAGCGCGTGAGAGGTGCAGAATGACTTCCGGCAAACAGTCTTATTAAAGGAGATGTTTCCTGCATGGTGTGAACTTTACTACATCCTCCTTCTGTgttaatacgtattcagttgagctgaagttaatatattcagttaataagttaatatatattaagtttatcgaaagttaatatgtatttagttgagctaaagttaatatATTAAGTTAAAATGACGTCTCAGCAGTCTGAGTCCAATCAGTACCTCTCAGTAACTTCAGACAACCCCTGGAACGACTCCTCTTCCATTGGAAGCAAGTCGGAAAAtattattattattattattattatcatgattaGAATGTCGAGGCCACGTCTATGAACACGAGGAATGACCCCTGAAGTGCTCGGCATTGTTTGAGACTTGGAGGTGAACAGTCCAACGAGAAGTCTTCTGTTCCTCTGGACCTGCAGCTCGGGGGCCAAAGGGCTCCTGGTGAGCGATGAGGAGAACTGCTTATTGGCCCGTTGCCGTCTCCACATGCTGGGGTGTACACAGAAGTGACACTCAGCTCAGTGTCTATTTAGATTTGACCACTCGGTGCCAACCGTGGAGGGAAATGTTCAATAAACATGGCAGCACTCTTCTcGATGAAGTCCTGGTGAGACCCGATGGGTGAAAGCcCACGCTCCTCCACTGACCCCCTGTTTTCTCTCTTTTGGCCCTCAGCTGAGGATCTTTGAGAACCAGCTGTCCAGAAACAAGACGGAGGAGCGCTCCGGGCTGAATAAAGACCTGCTGGCCATCCGCATGGCCTCCGTCAACCCCATCCTGGACCCTTGGATCTACATCCTGCTCAGTAAGACGGTGGTCCTGAAGCTGATGGAGAAAATCAAGTGGCTGTTCTGTGAGATGGGCGCTCGGGGCCGAGGGGGgGGCGGCGGCGGGCGCTTCCGCTGTGCCGACTCCCGCCTCTCGTCCTCCGTCGTGTCGCGAGACTCCCCGTCGCTGGTGTTGAGGGAGCCGAAGGTGATGGCGAGCAGCTCCCAGACCGTGTTGTACCCGTGTGAGGGCGCCGAGAGGGCGGcggacgcggggtcgcctgacgcgaggtcgccggacgcggaGAGGCCGCCGCCGGCACAGACGTCGGGGGTCACCCGGGAGGTCGAGGCCTCGGGGGACAGGGCGGCGGCCTTGAGAGAACTTCTGATGTGTCGCAAGGACCCGACGCTGCACGTGACCTTCACGGACGAGAGCGCCAACACGCAGGAGAAATGCATAATGAACTCCACGGCAGCGCATGCGGGGAGATTTCAACCGCCCACCATCCCGGCGATTATGTTCATTTTCGGGGTGGTGGGGAACGTCATCGCGATCGTGGTTCTGCGGATATCACGAAAGGAACAGAAGGAAACAACTTTTTACACCCTGGTGTGTGGcTTGGCGGTCACGGACCTGCTGGGCACGCTGCTGGCCAGTCCCGTCACCATCGCGACCTACGTGAAGGGCGCGTGGCCCGGCGGCGAGCCCCTGTGCCAGTACACCGGCTTCATTCTGCTCTTCTTCTTCTTGGTGCAGCTGTGCATTGTGTTCGCGATGTCAGTGGAGAGGTACTTGGCAATAAACCACGCGTACTTCTACAACGAGTACGTCAACCAAAAGCTCGCCGCGCTCACCCTTTTGGCCATTTACATGTCCAACATCGTGTTCTGCGCGCTGCCCAGTGTGGGGTTCGGGAAGGTGACGCGCCAGATGCCGGGCACGTGGTGCTTCATCGACTGGAAGAACAACCAGACGACGGTGGCGACTTTTAATTTGATGTACGCGGGCGTGAACTCGGTGATCGTGCTCGCCACCATCATATGCAACGTGATGGTGTGCGCGGCGCTGATCCTGATGCACAAGCGGTTCATCCGACGCACGTCTCTGGGCGCCGAcCAGAGGCGCtTGTCGGACCTGCGGCGCAGGCGCAGTTTCGGACGGTTGGCTGGAGCGGAGATCCAGATGGTGATCCTGCTGATAGCGACCTCGGCGGTGGTTCTCATCTGCTCCATACCGCTAGTGCTGAGGATCTTTGAGAACCAGCTGTCCAGAAACAAGACGGAGGAGCGCTCCGGGCTGAATAAAGACCTGCTGGCCATCCGCATGGCCTCCGTCAACCCCATCCTGGACCCTTGGATCTACATCCTGCTCAGTAAGACGGTGGTCCTGAAGCTGATGGAGAAAATCAAGTGGCTGTTCTGTGAGATGGGCGCTCGGGGCCGAGGGGGgGGCGGCGGCGGGCGCTTCCGCTGTGCCGACTCCCGCCTCTCGTCCTCCGTCGTGTCGCGAGACTCCCCGTCGCTGGTGTTGAGGGAGCCGAAGGTGATGGCGAGCAGCTCCCAGACCGTGTTGTACCCGTGTGAGGGCGCCGAGAGGGCGGcggacgcggggtcgcctgacgcgaggtcgccggacgcggaGAGGCCGCCGCCGGCACAGACGTCGGGGGTCACCCGGGAGGTCGAGGCCTCGGGGGACAGGGCGGCGGCCTTGAGAGAACTTCTGATGTGTCGCAAGGACCCGACGCTGCACGTGACCTTCACGGACGAGAGCGCCAACACGCAGGAGAAATGCATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001244	Family	Prostaglandin DP receptor	Interproscan
IPR001758	Family	Prostanoid EP4 receptor	Interproscan
IPR008365	Family	Prostanoid receptor	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11866	G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0004955	Molecular Function	prostaglandin receptor activity	Interproscan
GO:0004957	Molecular Function	prostaglandin E receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006954	Biological Process	inflammatory response	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0007189	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007204	Biological Process	positive regulation of cytosolic calcium ion concentration	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0050728	Biological Process	negative regulation of inflammatory response	Interproscan
GO:0071380	Biological Process	cellular response to prostaglandin E stimulus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-