Gene detail

Detailed information of HS13248 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS13248	TORSIN	chr15	15920506	15923931	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS13248

TTCAACCAACCCCCCAGAAAAGAAAGAATTTACACACAAATAAaAAATAAAAAACCCGAAGTGGGCCGTAATTTAATTTCAGGTGATTCGTTGGACTCTGACGTCACGTCTGCGCCGCGTGTGCATGGCAACCACAGCGACCTCCGCCGTCAGAGTCGGCTTTGGGCGAACGGTTTAACGGGCACAACTCCCtcttttttcttcttttcttcttttcttctctctGCCCGGACCCGACGTGGATTACTCGGTGACATGACGCCGAGGAGGAGCCCCGTCCCGCTGCTCCTGTGGCTGCTCGTCTTCTCCTCCGGCGGCGTGACGGAGGCGATCGAGCCCATTAGCACCAGCATCGCGGTGGGCATGGCCGCGGCGCTCACCGGGTTTCTAGCCAGCTACCAGAACATgTTCtgCTATTTCCACGAGTGCTGTCGACCCGAGTGGATTTATTTCAACAGGACAGGTAACGAACGTCGTCTTGTCGATACACTAGCAGTCGTTGCAGTTCGCTGGCTcGCTAGTTAACGTGTTTAATGTCGGCGAATTGCTCCAACGGCAGCCGCGCGTGCCACTTGTAAAGTAGCTAGACACGTCCACACAtCCAGTTGTTgTGCTTCTATTTGGTGTATATGTGGTTGTCTAATCAAACTTGCCCGACATGTCTAATCTTGTGTTTAACCTCGCTCGCTCGTCGCGTGTTTATGACGTGTGCGGAAGTGTCAAGCTAGCTCgTTCAGCTCGGATCGTCTCCCCCCGGaGGTGGTGTTATGGTCGTCTTTTCTAATCGAAACTGCAAACTACTCCGGGGGATAACCAACCGACGTCCACGATGAAGGCGACGCGCGTGTATTTGTTGCTGCACGTGTTGCTGTCGGCCGGCGTGCTCGTGCACAGCTTCGAGCCGGTCACGACGACGTTGTTCGGCTTCGGCTTGGCGGCTGTGGGCCGAGCGATCTACAACTATTTACACGAGAGTTGCGGCCCGAAGTGGATCCACTTCAACGCGACAGGTGACGACGACATtaACGCGCGTAGATCACGTGTTTGGTGCAGCTCGACACGtGTTTTGTATATATATATAtTTTGAAGCTATATTTATACATGaTCGGCTCCGATACTGGTGTCATTTGCTcAGGTGTGCCGCCCCCCATGgCATGTACTCAAAGTGCTGCACTTACTGAAGTACACTtttattattatttttactatgtttgttttgttttttctgttctgtttttgttgttgttgcttgtacgacattttatgttttgatccatgtgtgtgtgtactgtttgtgtgcctgtcatagttgggaggggcggggttaaagggttcggggcggggccgtccaactcctcatctcagaggagccgacagacctctgtctttggacggtcctccattcatacatttttttgtgtcaatgcctgtcactatgtacacgttatgtatggacctatggaaataaattactaacttaattacttTCaGACACTTTTGAGGAACCTTTTATttacagttactgtgaggaactaacggctctcgaaacagtctcaatttaataacgaggtgacatacttctgcaagcaagaccatcaataagacgattggttatttcttgtttagtttttctcactgcttgtcaACAACGACATGGCGCTGCTGGAGGCCTCGGACGTGTCGCACAGGGAAcgGGGGCCCGGGAGAACCGGAACTAGGACTGTGAGGGGTCGACtCGGTGGACTTTTGTGCTTGGAAGCTCTGCTGACTGTCAGCATTCAAGTTCCTGTCGTAGCTTTGAGTTGCATGCCTTTTTATCtGTcGATTaGTTTTGTTTATgAATGTCagGACATTTTGAAAACACATCTTGTGCATTGTTCTCCCGATAGTTGAAGTGTTTTGCGTTGCCTGTATAATATTCTCTCCAGcTGTTTGCCGTCCCTGACCCTTGTTGCCGTGCAACCTCTCAGGTCTCCAGGCGGACCTGGAAGCCAAGCTGTTCGGGCAGCACATCGCGTCGCGCATCATCCTGAAATCGGTGACCGGCTTCATGGGCAACGACAACCCCAAGAAGCCCCTGGTGCTCTCCCTGCACGGATGGACCGGCACCGGGAAGAACTTCGTCAGCCAGATGATCGCTGACAACATTTACAAAgAGGGGATGAAGAGCAGCTTCGTTCACATGTTCACGGCTGAACTCCACTTCCCACATTTGAGTCAAATTGAAACCTACAAGGTGGGATGACGACTCCAGATTAAATATAATCCAGTTACTTTCTcTTGATCTTCTTCTGTTTAGGTTCATATGAACACGCTGCCGTCCCTCCTCAGGCTCAGCTGCAGCAGTGGATCAAAGGCAACGTCACCAACTGTGCACAGTCCATGTTCGTCTTTGACGAGATGGACAACATGCACCCCGGCCTCATTGACAGCATAAAGCCGTACCTGGAGTACTACGAAAGCCTGGATGGAGTTTCTTATCGGAAAGCCATCTTCATCTTCCTCAGGTGAAGAGATGAAAGCATTGACCAGTCAAACGCTCTAACTGGAACCATAGAAAGATATCGATCCGGgGAACTCGGTGTATCGCGTATCTGTTTtTATAGATGCACATTAATAGCAAGTACTTGAAGATAAaCAACaTATGAAGTGCAGGTATGAAACTAGAGGTATTAAACAGCTGAATGCATTCTTAAAATTAGTGATATTGAATGTGATTTTAACAGAATCTTGGGTGTGTTATGTTCACTTTATTGATCAGGCGTGTGGTGCGTTCAATGTAGAAACGCTTTGCACCTGAATGCAGCCTTCGAGATTAGTTTAGTGTGTTGTGGTTCAAAGCTAGTTTtCCTCATGATCTTAAAAACTCAACAGAGCAGTGCAATAAATAAATACTTTTGTTTTTAAAAGAATCGTTTGCTGCTTGCGATCCGAgCTTCTCACCGCTTCCCCGTTTGTGATCTTCCTCCTAGCAACGCCGGCGGGGAGAGCATCACGCAGACGGCGTTGGATTTCTGGAAAGCGGGAcgagatcgagaggagctcgagctcagagatcTGGAAAcGGCGATTTCTCTGaCGGTGTTCAACAACAAGAAcAGTGAGTCTCAAGTCGACCACTGCCTCCTCGATTCCTCGAGTGTCCGATCGTACTAAAGTACCCGTTGCTCTCGTCCCGCAGGTGGCTTGTGGCACACGAGTCTGATCGACAAGAACTTGGTGGACTTCTTTGTCCCGTTTCTGCCCCTGGAGTACCGGCACGTGGCCCAGTGCGCCATGGCCGAGATGAAGGCCAAAAACCTGCTGGCGGACCCaGCCGTGGCGGACCAGGTGGCCAGCGAaATCAaCTACTTCCCGAAAACCGAGAGGATTTTCTCCGTCAAGGGCTGCAAGACGATAGCGAGCAAGTTGGACTACTTCTACACATTCAACCAACCCCCCAGAAAAGAAAGAATTTACACACAAATAAaAAATAAAAAACCCGAAGTGGGCCGTAATTTAATTTCAGGTGATTCGTTGGACTCTGACGTCACGTCTGCGCCGCGTGTGCATGGCAACCACAGCGACCTCCGCCGTCAGAGTCGGCTTTGGGCGAACGGTTTAACGGGCACAACTCCCtcttttttcttcttttcttcttttcttctctctGCCCGGACCCGACGTGGATTACTCGGTGACATGACGCCGAGGAGGAGCCCCGTCCCGCTGCTCCTGTGGCTGCTCGTCTTCTCCTCCGGCGGCGTGACGGAGGCGATCGAGCCCATTAGCACCAGCATCGCGGTGGGCATGGCCGCGGCGCTCACCGGGTTTCTAGCCAGCTACCAGAACATgTTCtgCTATTTCCACGAGTGCTGTCGACCCGAGTGGATTTATTTCAACAGGACAGGTCTCCAGGCGGACCTGGAAGCCAAGCTGTTCGGGCAGCACATCGCGTCGCGCATCATCCTGAAATCGGTGACCGGCTTCATGGGCAACGACAACCCCAAGAAGCCCCTGGTGCTCTCCCTGCACGGATGGACCGGCACCGGGAAGAACTTCGTCAGCCAGATGATCGCTGACAACATTTACAAAgAGGGGATGAAGAGCAGCTTCGTTCACATGTTCACGGCTGAACTCCACTTCCCACATTTGAGTCAAATTGAAACCTACAAGGCTCAGCTGCAGCAGTGGATCAAAGGCAACGTCACCAACTGTGCACAGTCCATGTTCGTCTTTGACGAGATGGACAACATGCACCCCGGCCTCATTGACAGCATAAAGCCGTACCTGGAGTACTACGAAAGCCTGGATGGAGTTTCTTATCGGAAAGCCATCTTCATCTTCCTCAGCAACGCCGGCGGGGAGAGCATCACGCAGACGGCGTTGGATTTCTGGAAAGCGGGAcgagatcgagaggagctcgagctcagagatcTGGAAAcGGCGATTTCTCTGaCGGTGTTCAACAACAAGAAcAGTGGCTTGTGGCACACGAGTCTGATCGACAAGAACTTGGTGGACTTCTTTGTCCCGTTTCTGCCCCTGGAGTACCGGCACGTGGCCCAGTGCGCCATGGCCGAGATGAAGGCCAAAAACCTGCTGGCGGACCCaGCCGTGGCGGACCAGGTGGCCAGCGAaATCAaCTACTTCCCGAAAACCGAGAGGATTTTCTCCGTCAAGGGCTGCAAGACGATAGCGAGCAAGTTGGACTACTTCTACACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06309	Torsin	Torsin	Family	Interproscan
PF21376	TOR1A_C	Torsin-1A, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010448	Family	Torsin	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR049337	Domain	Torsin-1A, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10760	TORSIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005635	Cellular Component	nuclear envelope	Interproscan
GO:0005788	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0019894	Molecular Function	kinesin binding	Interproscan
GO:0034504	Biological Process	protein localization to nucleus	Interproscan
GO:0071763	Biological Process	nuclear membrane organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-