Gene detail

Detailed information of HS12828 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS12828	CYTOKINE RECEPTOR	chr15	2484907	2494643	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS12828

ATGGCCGCCGCTCGGCCCGCGCTCTTCTTCTCCCTCCTCGTCTTCGCTCTCTCGCCGTGGGAGTCGGCCTCTGAGCCAGGTGAGGTCATGAATATCTGTTCTATCAGCATTATATAAAAACATTTGTTTTAAATTATTTTGTAAACACCTGAGACAGATTGTAGTTCTTCACGCTTAAACATAACGATGACAGTAATGTTGCGCAATAGTGTGTGTGCAGCGTTGTgtttgtgttctggattcacgagttacacaacagcacacacacacacacacacacatgagggagcatctggaaccgaacatggctcttcagtgatgccatagaagaaccatttctggttccacaaagaacctttcaatccagggttctttaaggcaccatttccttaaagtgttcttcaaaaaacctataaaggtgcctcaaagaactgtaaaacatggttctttaaggcaccatttctggtgcctaaaagaacctttcagatcagggttctctgaagaaccatatccttgaataggtcttcaaaaaacgtataaaggtctctcaaagaaccttgaaaacatgtttttaaggcaccatttatggttccacaaagaaccttccaaaccagggttctttagagaaccatttccttaaagagtactttaaataacctataatggtgtctcaaagaaccttcagaacatggttctttaaggcaccatttctggttccacaaagaacctttaaaaccagggttctttaaagaacctataaaggtgcctcaaatgaaagaaaggttctccagtaggtgatggttcttcgtagaaccacaaagccttttaaagaaccatataagaacctttgttgttctTAACTGgtgtgtgtgtgtgtgtgtgtgtgtgtgtgGGGGGGCAGATGAATATTTAGTAGCAGAAGTGTTGCGCAACCAGCGCCACCCTCAGAGCTTCCCAGGAATTCTGGAGAGCGGAGAGAGTTCCTGCTGAACAATGGAGAAGCTGTTCAgtgtgtgtgtgtgtcgggggccgggggggggggggggggcggcttgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtttgcatacacgcctgtgtgtTGACCAGTTAGAGTTCCCGTGCTCGGGCCTGTTCCGTGAGGCTTCAGGTTCATTCCTCTAGGAAACGAGGCCGCAGTGTCccccgggtaataataataataataataataataataataataacaacaacaataataacaacaataataataataataatcatattaatcatattaatcatattaataataatcatattaataataatcatattaataataatcataatcaaataataataggaatacttataatattaataataatcataatcataataataatattaacaatcataataatcataatagtcctaataatcataataatactaatgataataTGTGAGGACACGCTGCCAAGACTCTTCAACGGAGCCTCAGCGATGTTTATAAACCCAGTTGGAGTCGGTTTGGCCAACTTTTAATTATCACCTTGTGTATTCCTTCGTCTCCTTTACACAACGTCCTCGCTGTCTGTGTCCTTAAGGGAAGGAGTCAAAACATTCCTCTCTACATGCTGGCATTGGGTTAGTTTTaaggtaggaggaggagttaggaggagatagaaggtaagagaaggaggtaggaggtaagagtatgtaggaggaggagttaggaggaggtataaggtaggaTTTttgattgattgattgatatatttatttgtcgtttgccagagtacaggtacaaaagcatcgaaattacaagaaagggtggatgaaagattacagcataacatgagggaagaaggcgagaaaaaacaccaaccccccgactatgccccgagagggggtacagtgtgggagcaggaaaaaaacaccttagcacataagcacatacattttagacatgacttgcaacgagtaggaaggggggaggggaggtaatccaacaactgggtgatctaagcccatccattgggggcagaaggtaaccagcaccgacaagcagccagccggtccggcgccaacatagcagcgccagccacagccccgtccggtcccactgggggtgaaaagcaggcgaaggcgtgggatggggggaggggggtagtgaatgcaatcagtattattgaaagttcgtgtgcgtgttctggtatgtcgtcctcccccaggccacaacagacagagttctcagtccgcaagatggtcgttgccatggagatagccttgaaaggtcctgggagaaaacaaccacaggtgtctgtggatagggggaagggaatgagagaggttctcacttcagcgatcttcaggggagttgttgttcccgtaacggccttggccaaggcaccgttctggttgagggagccgaaagcagataagattgggattgtttggtctgccagcagctacatccaatttgcgcacctgctattccaccactttcctcccatttttcaaatcgatccaatttcgtcgggcagccttagggggcttttaacggctgtcaccgtttccttaattttccgataaaccagggcaacgccaaatccaaacagcagaaatcctgtaatcatagttccgaataggtagatgtcatctacgtcctccacggaaaggctgctaggcacacgacacgtccatcgtgtaaccagctgcaacgtcccggcgtgggaggaggaggtaagaggatgtatgaggaggtagaagataggaaggaggaggtaggaggtagaagatagaaagtagaactaggaggtaggagtagggaggaggtataggtggtaggaagaaaaaagaggaggaggtaagaggaggaggaggtaggatgaggtagaagataggaagtaggagggagtaggaggaggaggtaggatgaggtagaagatagaaaggaggaggtaggatgattagggaggagttagaaggaggaggaagaagatatgaagaaggaggtagaagtagtaagaggtaggtggagggggtaggaggaataggtaaaaggaggaggtaggaggtagaaggaagaggaggaagaggtaggaggaggaggtaggaggaagaggaggaagaggtaggaggaggaggtaggaggaagaggtaggaggaggaggtagaaggaagaggtaggaggtaggatgaggaggtaggaggaggaggtaggaggcaggaTTCTGCGTCTGGAGGTTGGATGCTCCCCTGAGGAGGTGAATGTGTGACTCATGTTCACGTCACCATGGGAACGTGACGCGTGGCTGTTGATGTGATGAGGTCAGAATCTCTCTCTGAACAtgtgtcctcgtgaccttgtgtcctcgtgaccttgtgtcctcgtgacctCGCTGCCTTGCGTGCTCCCAGTGAAGACAGTGCAGCTGTGGTGGAAGCTGTAATCATGGAGAACGAAAGGAGGCGACGTGAGGAGGGAGGAGTCCACTTCGAGGTGATCACTACTGGTTTCCTCCTTCCTTGGGAATGTCGAGGAGGAGGAGACGCAGCCCGGGCTCAGCCAATCAGAGCGAGGCAGGATGTTTTCATGGAGAGGAATCCTGCCGACACGTTTACTCCTCCGGAGGAGAGAGAAGATCTCGTGAAGAGATACCggctgggaagagtgtgtgaacacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacagacacacacactcacacacacacagacacacacacacacacagaagaataacggttctttaaaagactttgtggttccacgaagaaccatcaactactgaagaaccattctgtcgtttgaggaacctttaaaggatctttgaagaactctgaataaagtgtgtgtgtgtgtgtaagtgtgtggttgtgcgtgtgtctgtgtggttgtgtgtgtgtgtgtacgtgtggttgtgcatgtgtgtgtacgtgtgtggttgtgcgtgtgtgtgtgtggttgtgtgtgtgtgtacgtgtgtggttgtgcgtgtgtctgtgtggttgtgtgtgtgtgtgtgtacgtgtgtggttgtgcgtgtgtctgtgtggttgtgtgtgtgtgtgtgtgtgtacgtgtacgtgtgtggttgtgcgtgtgtgtgtgtggttgtgtgtgtgtgtgtgtacgtgtggttgtgcgtgtgtgtacgtgtacgtgtgtggttgtgcgtgtgtgtgtgtgtgtgtgtgtgtggcctacagatatgaCCTGAAAGCTTCTCCTGCTTGTTGACTTTCCCTCGGTGAAAGAGGTGAAAGTCGTGTGTTGAGTGTGAGGTgTTAgatgtactattgcataatatgtaattacacacactcatacacacacacacacactcacacacacacatgtgtccaGATGGGGTAAATGAGCCTCCTGAGTGTTCCTCACAGCCGAGTGTCAAATTGAATGTTCTCGTAATCCGTAGCCGGGTAGAGTTCGGGGAGGAGGGgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgggggggtctctgtaaacaggttatttttaacCCGTGACTCCCTGTCCCCGAAGcCCCCCCCCCCCCCGAGGTATTCATCTGCTCCCAGAGGAGCCATCTTGTTGTTCCTCTCTGACCTGTTGACGTGGTCAGCTGACCAGTTATTGATCTCAGAGCTCCCTCGCTCCTTAAAGGGCCGGTACGCAGAGTCGAGCATGTAGGAACACCCTGTCTATGTGAGGTGCTTCAGAAAAAGGTTTGTTGTGTTCAGTTATGATTGTTTATCGTtgctcctggtggcccctgggtgttcctgcgggcccctgggtgctcctggtggcccctgggtgctcctgcgggcccctgggtgctcctgTGTCCTGTGTTCATGTCACAGTGATAAACATTTAAAATAGTTGTTAGTGACCCGAAGAGCAACAGAAAGAGTACAACGATGATTATAACAAAATAATGACACGATGAATAAAAGATGTTGTTAtctccctctccctctccccctccacctccccccccagtcctcccccAGACTCACCCCCAGGTCACCGGTTGCGTCTCCACCAACATGGAGACGTTCCGCTGCCGGTGGACCGTCGGCTCGTCCCGTGAACTCTCCGAGCCGGGAGCGCTGCGCCTCTTCTTCATCAACAAGAAGTAAGGAGGGAGAGCCCCCCCCCTCCCCCTTCCCCCACATTGTCCCGGTCCGGCCTCTTTATGACTCGGTCACCTCTCTCTTCACTCTCGTGTTCTTATCTGTGTTGACGAGGCAAAGGTCCGGTTCTGAGGCCAGTTCCTGTGTTTCTGTTGTTGATGTTACGTTccccccccccccagacccccccctgcctcccccGTGGAGTGGAGCGAGTGTCCTCACTACAGCGGCGAGCGGCCCAACGAGTGCTTCTTCAACGAGAACCACACCTCCGTCTGGACCTCCTACAGCGTGCAGCTGCGCTCCGGAGACCGGGTCTACGACGAGAACCTGTTctacatccacgacatcggtgagagagagagagggagagagagggggagagagagagggagggagagggggagagagagtgagagagagagagagagagggagggagggagagggggagagagagagggagagggagggagagagggagagagagatagagagagagagagagagagggggagagagagagggagaggagagagagggaggaggagaggggagagagaggagagagggagagagagagaggaagggagagagagggagagagagaggagaggagagaggaggaggggagagagagagagagagagagagaggagggagagagaggaggaggaggagagagagagagaagagagaggtgagagagagagagagaggagagagaagagagagaggagggagagaggagagagagagagagagagaggagagaggaggaggagagaggagagaggagagagaggagagaggagagagaggagagagaggagagaggagaaaggagagagagggaggagagaggagagagaggagagagagagaggagagagagggggagagagaggagagagagagagagggagagagagagaggagagagggagagagagaggaggaggagagaagagaggggagagagagaggagataggagaggagagaggagagagaggaggagaggagagagagagagagagggagagagagggggagagagagaggagagagagggagagagagagagaggagagagagaggagagagagagggagggagagaggggggagagggagagggagagagagagagagaggggggagaggggggagagagaggagagagagaggagaggggggggaggagagagggaggagaagggggggaggagagaggagagagagagagagggaggagaggaggagagggagagagggaggaggagagagagaggagagagaggggggagaggagggagagagagagagagagaggaggagggaggagaggagggagagagagggagagagagagaagggtgggagaggaggagggagagagagagagggggagggagagagggagagagagaggagaggaggagggggagagagaggaggagggaggagagagagagagagggagagagaggagggagagagagctgtagagagggatggaggcccagagagggagagagagccccagctgtattatgggatggaggccctgtgcggtggcttgacggtgtccccagctgtattatgggatggaggccctgtgcggtggcttgacgtgtccccagctgtattatgggatggaggccctgtgcggtggcttgacgtgtccccCTGCAGTGCAGCCGGACCCCCCCGTGGCCCTGCAGTGGGCCCTGCTGAACACCAGCCTCACCGGCTCCTTCTACGACATCCGGCTGAGCTGGAGGCCGCCGCAGTCGGCCGACGTGGAGACGGGCTGGATGACGCTGACCTACGAGGTGCAGCACCGCGACGTGACCTCCGACCTCTGGGAACAGGTGGGGGCACTCATCATATTAAAGCTGCTTCTTCTTCTTGACTTATATCCCGCTTGCCTTAACCTTTATGcccccccccccccccccccccccTGCAGGCCGACCTGGTGAAGAGCACCCATCGTTCTATTTTCGGGCTCCAGGCCGACGTCCACCACGAGGTTCGGGTCCGCTGCAAAATGTTCGGCGGGAAGGAGTTCGGCGAGTTCAGCGACTCGGTGTTCGTGCACGTTCCCTTTAAAGGTAAACACGCGTGTTTACTTGTTTACGTGTTAACGTGTTTACAGGCTGGATGAGACAAAAAGCTAAAAAAcatttatttatatgcattcatttatatgcattcattttaatgcatttatttgtttgcatttatttatgtgcatttatttatctgcattcatttgtatgcatttatttgtttccattttatgtgtgtattcgtgtgcattcatttgaatgtatttatttgaatgcatttattagtgtgaatttatttgtgtgcatttatttatatgcatttatttgtttgaatttatttgtttggatttatttgtatgcttttatttgtatgctcttatttttttgcatttatttttgtgcaatttttgtgatgcatttattcatatgtatttctttgtgtgcatctctttgtgtgcatttctttgtgtACTTTAATTTGTGTGTGTTTATTCCTGTGCGTCTCTTTGTGTGCGTTTCCCTCCCAGTGTCCCGAGTCTCCGTGGTGGCGCTGCTCGTCTTCGGCGCGCTCTGCCTGGTGACCGTCCTGATGCTGGTGGTCGTGTCGCAGCAGGAGAAGTGAGTGTTGTGAGGCGGACAAGAGCTTAGATACCTGAGAGCGCTGTGTGGTGTTCAGGGACCAGCACACTGTGTGGGAGACCTTGTCATTCATGCGTGTGACAGTGGGACGTTGTGTAGATCCTCTCTGCGATGAGCGACATCCTGAGATCTCGACTCCAGTGAGTTTTGGGTTCACACTCGTTTCTCCTCCTCTCTCAGGTTCATGGTTCTTCTCTTGCCTCCTGTCCCTGGACCTAAAATCAGAGGAATCGACCCAGAGCTCCTGAAGGTATCCGTCTAGATGTTATTAGATCATGCCATGTTTTAAACATCTAAAAGGGAAACCACTTTCAGGCTCACAGAACACTGTCCCATAGGGGATGTTTTTATGAAAAGAAatatattcagtatatatttttaaaaaaaattaatgtacaaaatattgattatatgatataattattttgtacattttgtacaaaataaatatgtcaaaaatataatataatatgatatttgttatatatttttgatatgccatatatttatatttaaaaagaaaatatatatatatttatataatgtagtattagcctgaatatgagaaatttctttatcgaaaaaataaaatatatatatatatatataaaaatatgatatatatataatattttgtatttatatatatatatatatatatatataaatacaaaatattatatatataatattttaaatacatatataatatatatacaggtatatatatttataatatatatttatatattatttacaatatattttcatatctattttatctatttttaatatattttatatatatgtgatttttatatattttcatatctatttttttatatatatatatatatatttacatacatatacatatacatgttttctttcctgttcacagtgttcagaaaaccttcaggATGCTCGTGTTTCTCGACCTTGTTTATTTAACTACGTCATAGAAAACCCACTCAGATAAAAACAGCTCAACGCGGatgtatatatatatatatttatatatatTTTACCTTCCCCAGAACGGGAAGCTGAGGGAGTTGGCGTCCATCCTGGGCGGGCCCCTGGACCTGAGGCCAGAGCTGTACCACAACGACCCCTGGGTGGAGTTCATCGATCTGGACCTGGAGGAGCCGAGCGACCCGCTGGCGGAGCTGGACACGGACCGCCTGGTGGAGCGCTGCCCGCCGTCCCCCCCCGACGACGACTCGGGCCGGGCCAGCTGCGACCCGGATCTGCCCGGCGACCCGGAAGCGTCGTCGCCGTTGGCTTCCCTCCTCCCGAAGGATCGGACCCGCGGCGAGGCGGCGGCGGGCCGAGAGGCGCTGTACACCCAGGTGAGCGAGGTGAGGTCCTCGGGGAAAGTGCTGCTGGCGCGGGACGAGGACGCGGAGAAGAAAGGCGTTCGGCTCCTGGCGGCGTACCCGGGTCACGGAGGTTACACCTCGGAGGTCAACGCGGGAAGAATAAGCCCAGCGTCGACCCCGGGAGACGccgcgccgtccttgccgtcctcgccgcccgcgccgtccgcgccgtcctcgccgcctcTTTCCCCGGCGCCCGTCTACACCGTGGTCGAGGGCGTCGGCCGGCAGAACAGCCTCCGCCTGACGCCCAGCTCCACTCCCGCCCCCCAGCTCGTCATCACGAAGGTCGTGCCCACGCCGGACGGCTACCTGGCCCCTGAACTCATGGGCAGCGTCACCCCGTAGATGGCCGCCGCTCGGCCCGCGCTCTTCTTCTCCCTCCTCGTCTTCGCTCTCTCGCCGTGGGAGTCGGCCTCTGAGCCAGtcctcccccAGACTCACCCCCAGGTCACCGGTTGCGTCTCCACCAACATGGAGACGTTCCGCTGCCGGTGGACCGTCGGCTCGTCCCGTGAACTCTCCGAGCCGGGAGCGCTGCGCCTCTTCTTCATCAACAAGAAacccccccctgcctcccccGTGGAGTGGAGCGAGTGTCCTCACTACAGCGGCGAGCGGCCCAACGAGTGCTTCTTCAACGAGAACCACACCTCCGTCTGGACCTCCTACAGCGTGCAGCTGCGCTCCGGAGACCGGGTCTACGACGAGAACCTGTTctacatccacgacatcgTGCAGCCGGACCCCCCCGTGGCCCTGCAGTGGGCCCTGCTGAACACCAGCCTCACCGGCTCCTTCTACGACATCCGGCTGAGCTGGAGGCCGCCGCAGTCGGCCGACGTGGAGACGGGCTGGATGACGCTGACCTACGAGGTGCAGCACCGCGACGTGACCTCCGACCTCTGGGAACAGGCCGACCTGGTGAAGAGCACCCATCGTTCTATTTTCGGGCTCCAGGCCGACGTCCACCACGAGGTTCGGGTCCGCTGCAAAATGTTCGGCGGGAAGGAGTTCGGCGAGTTCAGCGACTCGGTGTTCGTGCACGTTCCCTTTAAAGTGTCCCGAGTCTCCGTGGTGGCGCTGCTCGTCTTCGGCGCGCTCTGCCTGGTGACCGTCCTGATGCTGGTGGTCGTGTCGCAGCAGGAGAAGTTCATGGTTCTTCTCTTGCCTCCTGTCCCTGGACCTAAAATCAGAGGAATCGACCCAGAGCTCCTGAAGAACGGGAAGCTGAGGGAGTTGGCGTCCATCCTGGGCGGGCCCCTGGACCTGAGGCCAGAGCTGTACCACAACGACCCCTGGGTGGAGTTCATCGATCTGGACCTGGAGGAGCCGAGCGACCCGCTGGCGGAGCTGGACACGGACCGCCTGGTGGAGCGCTGCCCGCCGTCCCCCCCCGACGACGACTCGGGCCGGGCCAGCTGCGACCCGGATCTGCCCGGCGACCCGGAAGCGTCGTCGCCGTTGGCTTCCCTCCTCCCGAAGGATCGGACCCGCGGCGAGGCGGCGGCGGGCCGAGAGGCGCTGTACACCCAGGTGAGCGAGGTGAGGTCCTCGGGGAAAGTGCTGCTGGCGCGGGACGAGGACGCGGAGAAGAAAGGCGTTCGGCTCCTGGCGGCGTACCCGGGTCACGGAGGTTACACCTCGGAGGTCAACGCGGGAAGAATAAGCCCAGCGTCGACCCCGGGAGACGccgcgccgtccttgccgtcctcgccgcccgcgccgtccgcgccgtcctcgccgcctcTTTCCCCGGCGCCCGTCTACACCGTGGTCGAGGGCGTCGGCCGGCAGAACAGCCTCCGCCTGACGCCCAGCTCCACTCCCGCCCCCCAGCTCGTCATCACGAAGGTCGTGCCCACGCCGGACGGCTACCTGGCCCCTGAACTCATGGGCAGCGTCACCCCGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12772	GHBP	Growth hormone receptor binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR025871	Domain	Growth hormone-binding protein	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR050379	Family	Type I Cytokine Receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23036	CYTOKINE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004896	Molecular Function	cytokine receptor activity	Interproscan
GO:0004903	Molecular Function	growth hormone receptor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0017046	Molecular Function	peptide hormone binding	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0019838	Molecular Function	growth factor binding	Interproscan
GO:0019955	Molecular Function	cytokine binding	Interproscan
GO:0043235	Cellular Component	receptor complex	Interproscan
GO:0046427	Biological Process	positive regulation of receptor signaling pathway via JAK-STAT	Interproscan
GO:0050731	Biological Process	positive regulation of peptidyl-tyrosine phosphorylation	Interproscan
GO:0060396	Biological Process	growth hormone receptor signaling pathway	Interproscan
GO:0070195	Cellular Component	growth hormone receptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-