Gene detail

Detailed information of HS12600 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS12600	TYROSINE-PROTEIN KINASE	chr14	7859315	7865444	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS12600

ATGGCCGACCTGATCGACGGCTACTGCCGGCTGGACGGCGCCTCTGAGAGCTCgCTCATTATCCGGCCCGGCAAAGGTACACCGGAGTCCAAATGGAGTGAGAAACATATACGAAATCCACGTATAGAAACCTTTAAATGTTCCTTTTCATTTTATCAATCTCTGAGATGAACAAAACCCCAAATGCTGTTACTTTAGGGAGAGATGCGAGACTGAAACTACCCGACATCCCACTAAGGTGAGCGTGAAGAATCTTATTGGAAAGTAATTACAATTCATTTTCACACCTTCCTCCTCCTTTATGTTGGCTCATACCCTGTCACCAAAAGGTCACAGCTGGATTGACTCTTTCTCTCTCTCTTCCAGTGGGGGTGCCAGTAGTCCTGATAGAGGTCTGAGTAAGTCTGATGACTGGTTTCCAAATTACACATTAAATGTGAACTTTACATCCTGTCTACAATAacagattgttaagcactccgagaaaaatttttaatttgtgaaattgggctatacaaataaactaaattaaatttaaattaaaTTTAGACTATTCAACAAGGATTCAAGTTTTTTCTGAGGCCTTTTCTGTTTATTTATTTATTtGTGAGGGTtagccctaacactaaccccctaaccctaacccctaacactaaccctTTATTTGTTTGTGGCTTTAAACAGAAGAACAAACCTCAGGTTCGGACATTTATGCTGAGATTCCAGAGGACAAAGACGAAGACTCCGGTGGTGAGTCGTGTTCCACTGAACCTTTATTGAAAAAATGTTTTAAACCTCATATCCAATACCAaGCAATCATTCAGGAATGTCACTGTTTATGTTATATTTAATGTGCAGACATGTGTATCcAGGTCTGCAGTAGAGCAGATCTCATAAGCTTCCCCTCTGCTTCCTCATGTCTGCGTGTTCAGAGAAGCACCGGATCGCCAGAGACCACGTCGCTGTGGGTCGCATCCTGGGCGAGGGGTTCTTCGGAGAGGTTCACGCCGGAGTTTATAAAAGCCCGGTGAGTTCTTTGTTTCACCACAGTTCACTCGCCAACATCCCACTGGGGGATCGGAAAAAGGAAAACGAGGCCCCCTGATTGGATGATGTGTGTGTTTGCAGACTGGAGAGAGGATCAGCGTGGCCATCAAAACCTGTAAGGACTTCACGGCTGAAGTCAAGGAGAAGTTCCTGAGTGAAGCTGGTGAGTGTGTTGCAGTGATGATCAGCCCTCCAGGGACCTGTGACAAACAGGAAGTGATTTATTGGTACTGTTTTCTCACATGAAACTGATCCTTACCATAGGGTGATGTATGTGGGTGTCTGAGTTGGTTTTCGCTGTCGTCGACTTCCTGTTGCCTGGATGTGGCTTTGTGAAAAGGTTCAAACCGGAGGCTGAAACCTCGGGTTAGAGACCAGAGGCCTTATTTAATTtatGTTTGTAGGTGACTGAAACAGTTTAGAAAGACAACAACTAAGTGATACAATTTACTGGTCTTTAGATAAGATAAGATGAGGTCATCCTTTCTTTGTATCACAGCGGGGACACTTTGAAAAGTGTGTAAAAGGCCTCACTTTTAAAGCTGAAGTCACACTGAGGAGAAAACACTGTCACACATTAACAGAGTTGTTATGTTGAGGCTGGAAGACGTTTATTTTCAGTAAAATACAATGTTTACTCCTCTCGTAGCGCGGTTTTGATACCCGGCCTTTTAGTTACCAATCGCTCCGACATGCTTGGTGACGAGCAGGAAACCCACGTTGACCTTTTGAACCGCGTCGACTATTTATAACGAGAGAAAAAAGGAAGCTTGGAATTCATCGCTCGCAAAAGCTCCTGGTCGGATTCCATTTGTCAGACGGGAATCTTTGAGTTTCTTTCTCTTTCCTCTGATATCGATAAATCCCGACGTGAAGCGTTATTCACCCTGACGCAGGCTTGATGAAGAATCTGGATCATCCCCACATCGTGCGTCTCATCGGAGTCATCGAGGTCGACCCCGTCTGGATCGTCATGGAGCTCCTGGACCACGGGGAGGTGTGTTGCTCTGTTTGTGCGTTTTACATCAACAGCTCAGAATACAAGTTATATCTAGATACAGATAGAGATGTTGTTGCCCCCCCCCcACAGCTGGGGAGCTATCTCGTGCAGGAGAAGTACATCCTGACCACGGCGACGTTGACGCTGTACTGTCTACAAATCTGCAACGCCTTGGCGTACCTGGAGGGACTCAGCTTGGTGCACCGGTAACAGAGAGGCCCTCCAGTAGACACCTCACACCCCTCCAGCCGCCCTCTGGTGTTTCAGCGCGGGTAATTGTCGGGTTCTGGTTCTCTGTCCCGTCTTTGTGCCGCAGAGACATCGCGGCGAGGAACGTCCTGGTGGCGTCTCGGCAATGCGTCAAGCTCGGCGACTTTGGCCTGTCTCGGTACGTGGACGAACAGGAGTATTATCAAGGTacacacacacacacatggacacaaatgctcttacgacacacacTGTCTGCGTGAAACCTCCCATCTTCTTGTTTCTTCTTTATTTGGGGTGTTATTTACCTCCAGCTTCCCATcTCGCACATGTACAATAAGGAtttttttttttttttttttGCCATCTGTGgGCAGCCTCCGTGAGTCGACTACCGATCAAGTGGATGGCCCCCGAGTCCATCAACTTCAGACGCTTCACCACtGCCAGTGACGTCTGGATGTTTGGTGAGAAGCACGACGTCTCGTGTCTGAGCAGCTTGCTATTcGTGACTTATAAATACTTCAGAATACAATgtttttcctggtccaatgtgaggtcaaaggtcagggatgtcgtatgtggcgaatttgtgatattgggctatacaaaataaactgaattgaaTAGTGGAACTAAAGGTATACATTTAGTTCCACAGTTGTGAAACTTCTTTGGTTGTCGTTGGCAGAAGTGAACTTAATTCTGCTGAACTTTATGAGGAAGTTAGTCATAAAGCATAACTCTGACATCTGTTTACAGGGTAAGCATTCGACtGGGTTACGTTAGAGGCCAGAGGAGCATTgAAAGTGTATTCATGACCGGGCTTTAAGTCTAGGTCCGGCGTCACGACAGAAACCGTGTTTTGTTGGACCAGGTGTGTGCGCGTGGGAGATCTTCTCGATGGCcCAGCAGCCGTTCTTCTGGCTGGATAACGGGCAGGTGATCAACCAGCTGGAGTCcGGGGTTCGACTCCCCAAGCCGCAGCGGTGCCCGACCGCCGTCTCCTGCCTGCTCACCCGCTGCTGGGCCTACGAGCCGCACAcccggcccagcttcagccagctcgtctgctccctgaggtgcacacacacacacacacacacacacacacacactcatgccctttattactgttgatcttgAAGTCTTGAAAAGGTTTTGGGAGTTTGTGAGATTCAAATCTGTTCTTTCAaCTTTGAAAGAAGAaAAAaaaaCACACaAAAAAAcATATATATGACAAAAGTCAGACATAAGAAGTTTATTGgaacagtttttggcatattaggaaaaatgggttacatgcCAATATAAATgAATGAATGCacacttcttgctctaaatatgtataactaaaatgagcattatctaaaaatctacacatgcaatattaattgATGCCTTCTTTCAATTTAAAAACAAGAATGAaTAAATACAGAAGTTAACCCCGAAAGACAAACATGAGGTTGAGATATTGTTTAATTGTTCTCACgCCCACGTTTGAGACaTCATAtCACAAACTGATGTTTGTGCGTCAGTGACATCCACCGGATggagctggagcgggatgggaggcgggaccggTGTCACTCCATCGCATCATCAACCGACTCGAAGCACATCACAGAGCCTCCGCCCAAGGTACTTTATTTTTACTTCCTTTTCACTGTTTTATTGAGACGTTACTATtTTAAAATATCTGTTAATATgTGTCATGTGGGCCCAGGGAACACAAGCAGCCATTTGTATGGAAGTGAAtGGGAATGCTGAAGATCACACGCCctctctttctctctctctcACCAGCCGTCCAGAATACATGGCAATACCCTTCCTCGAGTCACGCAAATACAGGTGTCcacacacacacacacacacacacGTGGAGTAACATGCTCCAAAGTCAGGCATCGTATTTTCTCTGACCAAATCTACTTGTATTATGTTTGTtTGTGTGTGTGTgCGCGCGTAGGGAACAGACACGGACACCAGGCCAGTGTGGGAGAAAGAGAAAGAGCGAGTGGAGGACACTTTACAAAGACAAAGAAGAGAGATGCTAATGGATAAACAGTGGCTGGAGCAgGAGGAGGCGCAACTGGTGAGGGAGCTcacacacacacacacacacacacacacaGGAAGAAGCTTGTGGCCTCGAGAGTGTGACGAAAGAGACGAAGTGACTTTTCATGAAAGCGGAACATCTGGCATTACCACCTCACCTACATGATGAAACCACAGCTGCATTCACTGACATCTGCTTTTGTTGTACTGTAGGATCCTGTTGTGAGAGTGGATTCACACATCAAGGTATACTAGTTTTCTGTATTTCCTCTAGTGcTCATTTGACAGTTATATTAAAGCTGCATTAAGCACTTTATTACCACTAGGGGGCAGCGGCATACCTGGAGACAGTATGTACAGTAGGGTCATACACAACCGTTTTAGATGTGATAGTCCACATAGATTGTCTGCCTCTTTTAATCTTTAATTCTTTTAGTATTACTGAGAATGTATAGCACTCTGCAAGGTGTCCAGTTGATTTTTTTTTTAAGCCAATTTATCATCTTCCATTTATGAAAAGCCAATTTACAGAAATATCCTGACCTCTGACCTGACaGGAATGTTGAAACACAAAACCCTTAGAATTGGTAGATTCACCTCCTGTCGTCTTCCCCTTCTTTTTTTTGCAGACTCCTGCAAAAAGGCCAGAAAATGGTGAGCCTTCATAAACAGGCGTTAATGACTTTTAAGTCTTGCACTCTTCATGTTGAAAATGCCACTAATAATGCACAGAAAAGCTATGAAATACAAGCAACCACGACCAAATTCACCAGACTGTGGAAGCAGAGACACACAGCATGAATAGTTACGTACAGGTTGCACATATATCAAACAATCTAAAATAAAAAgTCATTTTTAATGAGATATTTAGGATTGTtACACAATATATTATACCTGCTTAAATTgTCAATTCTCAAAACAAAATGTGAAGATATGCAGCTTTTTCTTCCTCCCTCAGGTCCTCCAGAAAAGCCCCCAAAACCTCTCCCAGTCACACAGGTAAACCACAAACAATACAACCGTCTCCTCGGAAATGTCCTCAGATTGTGTGAATTTCTTATCATAAAAAAACTAGAAAAATGCAAATTTGGAAGCACGGCGGACTTTTTTATGACTCGCATTGAGCTTTTTGTTAAATGCGGTCATTAAAAAAAAAAAagTGTGTTGCAGAAGCCTCAGCCCACAGCCGAGCTGGACCGATCAGGTGACCAGGTTTACGCCGGCGTCATGGCGATGGTGAAACAGGTGGTCAAGCTGAAGAATGACGTCAACACGCAGCCGGCCTCCGAGTACCCCAACGCCGTCAGAGTAGGTCACCTGTTCGCCACACTGTTAAAAAAAAGAAAAAGAGTCCGTAATCACAGACGATGTcGTTTGTCTtTCCCTCTTCCcCCTcTCTctTTGCCTCCCTCGCCCACCTGCAGGCGGCGGGCATCACTCTGCGTGGCCTGATCCAAAGCGTGGACGACATCCTGCCCTCTCTGCACAGCTCGGTCACCACAGAGGTCAGCGTCTCCTCACCTGCGGGCGCTTTAAAAAtAAAAAAAaGGTGATGTGTCATGTGATCGTCTGTCCTCTCCGTCTCAGATCGAGGGCACGAAGAAGCTGCTGAACAAGGATTTAGGGGAGCTGATCAATAAGATGCGCCTGGCCCAGCAGAACTCCGTGACtTCGCTGAAGGAGGAGTGTCAGCGGCAGATGTTGGCGGCCGCTCACACTCTGGCGCTGGACTCCAAAAgCCTGCTGGACGCTGTGGACCAGGCTCGAGTCAGGGCCGACCGGGCCGGGCCCAGACCCGAGGACTCTGGGATGGCCGACCTGATCGACGGCTACTGCCGGCTGGACGGCGCCTCTGAGAGCTCgCTCATTATCCGGCCCGGCAAAGGGAGAGATGCGAGACTGAAACTACCCGACATCCCACTAAGTGGGGGTGCCAGTAGTCCTGATAGAGGTCTGAAAGAACAAACCTCAGGTTCGGACATTTATGCTGAGATTCCAGAGGACAAAGACGAAGACTCCGGTGAGAAGCACCGGATCGCCAGAGACCACGTCGCTGTGGGTCGCATCCTGGGCGAGGGGTTCTTCGGAGAGGTTCACGCCGGAGTTTATAAAAGCCCGACTGGAGAGAGGATCAGCGTGGCCATCAAAACCTGTAAGGACTTCACGGCTGAAGTCAAGGAGAAGTTCCTGAGTGAAGCTGGCTTGATGAAGAATCTGGATCATCCCCACATCGTGCGTCTCATCGGAGTCATCGAGGTCGACCCCGTCTGGATCGTCATGGAGCTCCTGGACCACGGGGAGCTGGGGAGCTATCTCGTGCAGGAGAAGTACATCCTGACCACGGCGACGTTGACGCTGTACTGTCTACAAATCTGCAACGCCTTGGCGTACCTGGAGGGACTCAGCTTGGTGCACCGAGACATCGCGGCGAGGAACGTCCTGGTGGCGTCTCGGCAATGCGTCAAGCTCGGCGACTTTGGCCTGTCTCGGTACGTGGACGAACAGGAGTATTATCAAGCCTCCGTGAGTCGACTACCGATCAAGTGGATGGCCCCCGAGTCCATCAACTTCAGACGCTTCACCACtGCCAGTGACGTCTGGATGTTTGGACCAGGTGTGTGCGCGTGGGAGATCTTCTCGATGGCcCAGCAGCCGTTCTTCTGGCTGGATAACGGGCAGGTGATCAACCAGCTGGAGTCcGGGGTTCGACTCCCCAAGCCGCAGCGGTGCCCGACCGCCGTCTCCTGCCTGCTCACCCGCTGCTGGGCCTACGAGCCGCACAcccggcccagcttcagccagctcgtctgctccctgagTGACATCCACCGGATggagctggagcgggatgggaggcgggaccggTGTCACTCCATCGCATCATCAACCGACTCGAAGCACATCACAGAGCCTCCGCCCAAGCCGTCCAGAATACATGGCAATACCCTTCCTCGAGTCACGCAAATACAGGGAACAGACACGGACACCAGGCCAGTGTGGGAGAAAGAGAAAGAGCGAGTGGAGGACACTTTACAAAGACAAAGAAGAGAGATGCTAATGGATAAACAGTGGCTGGAGCAgGAGGAGGCGCAACTGACTCCTGCAAAAAGGCCAGAAAATGGTCCTCCAGAAAAGCCCCCAAAACCTCTCCCAGTCACACAGAAGCCTCAGCCCACAGCCGAGCTGGACCGATCAGGTGACCAGGTTTACGCCGGCGTCATGGCGATGGTGAAACAGGTGGTCAAGCTGAAGAATGACGTCAACACGCAGCCGGCCTCCGAGTACCCCAACGCCGTCAGAGCGGCGGGCATCACTCTGCGTGGCCTGATCCAAAGCGTGGACGACATCCTGCCCTCTCTGCACAGCTCGGTCACCACAGAGATCGAGGGCACGAAGAAGCTGCTGAACAAGGATTTAGGGGAGCTGATCAATAAGATGCGCCTGGCCCAGCAGAACTCCGTGACtTCGCTGAAGGAGGAGTGTCAGCGGCAGATGTTGGCGGCCGCTCACACTCTGGCGCTGGACTCCAAAAgCCTGCTGGACGCTGTGGACCAGGCTCGAGTCAGGGCCGACCGGGCCGGGCCCAGACCCGAGGACTCTGGG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03623	Focal_AT	Focal adhesion targeting region	Domain	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR005189	Domain	Focal adhesion kinase, targeting (FAT) domain	Interproscan
IPR008266	Active_site	Tyrosine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR020635	Domain	Tyrosine-protein kinase, catalytic domain	Interproscan
IPR036137	Homologous_superfamily	Focal adhesion kinase, targeting (FAT) domain superfamily	Interproscan
IPR050198	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0004715	Molecular Function	non-membrane spanning protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005925	Cellular Component	focal adhesion	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0007172	Biological Process	signal complex assembly	Interproscan
GO:0007173	Biological Process	epidermal growth factor receptor signaling pathway	Interproscan
GO:0030155	Biological Process	regulation of cell adhesion	Interproscan
GO:0043197	Cellular Component	dendritic spine	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-