Gene detail

Detailed information of HS12547 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS12547	LYSINE-SPECIFIC DEMETHYLASE	chr14	6789224	6796808	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS12547

ATGCAATCGTGCGGCGTGTCTGTCGCCGTCGCTGCCTGCGCTGCTGCTCGGAGTCTCGGCTCGGCTTCTTCTGGTGGTGATGAGGGAAAGAAAATGGCGGCGGGAAAAGCGAGTGAAACAGAGGAGGACTTTCCGACACTGACAGCCCCGGAGAGGGACAGTTTGGCCGCGATCGACAGGTCGGAACGGTAGCCCCGTGCACTCACGCAGACGCACACTTTGAAAAATATGTGTTTTCCCCTCTTTGCATGTCGACAGTGTGTCCGAGCCGCTCTGCGAGTGATTCTGAGCCGCCTATGTTGTCTTCTCGCTTTGCAGCTCACTGTTTGGATTTCAGAAGCTTCATGAAGATGGCGCCAGAACGAAGGCCCTGTTGATTAAGGTAGTCTAATCTAACCTGGATGTATTTTTTTCCCCCCAGCCGAGTTTGGCACCCTTATCCCCCCCACCCACCCACCCGTGGATTTACTCCAACCTCGCAAGCGAGCGTGCACGGGGACGCATTTGCCCTCAAAGTCGGGAGCCCGTGATTACGCGGAGTGGCCCACTCGCTGAGGAGACCAAGGCCCCTCTATTAGCCACTCGGTTAGCTCGCTAGTTAGCTGCCCTCACCCTGCACCTGCGGCTGCTCGGCCACGATAAACTGTTAGCCAAGCGTGCCTCTCTTGGTGTTACGGCCCCCATTAACGTCAACATATGTCGGTGTTTGTTGTGCAACCGCCCTTCCCCCCCCCCCCCCcGTTAGCTGCAAAGCTAACGTTATTCCCTGCCGCGTATCCTTGTGCACTTGTGCAATTGTACCACCACCAGCAGACACCACAACGTCGTCACGTTTTAAAAAATATATATGTGGCACATTTATGACTTAAAACGTTGGGCTCAAAATGAGAAAAAAGTTGTCGCGCGGGGAACGGGTGCACGGTTTGTTTTTCATTGGAAACGTTATAACGCCGCTATAAACTCAGAAGTCCGGCTGCAAAGTGTTATAGCGTCGGTGGAAGTAACGGTGAAGCCTCCTTCGGGGTGCACCAAATAACAGCTCGCCCCCTTCACGTCGCACGGGGAGGCGAGTGCCCGTCGCGCGTGTCTCTGGCCACGTTGAGCGAGGGTTCGGTTGTTTTGCGACATGTACTCCAGGACGTATTCCGGTCCCCTCTTTTATATTTTTTTAATCGTTAGGAGTCCGAGTTGACACACGTTACAAGCAACGTTAATGGCTGGCCGCTTGTCCAAGATGGCGGGACACGGCGGAGTGACACCGATAGCGATATAAGCCATTTGATTTGAAGGTACAGCTGCGGGTCGTTTGCGTGTAGCCCTCCCttGTCTTTGCTCTCTGAAGAGACGTGTCCCCCTCGCCGACTCAGGTGGTGTCGGCGTCCTTTGTTTACAGTTTTAATCCCCCACCACCACCaTGTTCGGCTATGCATGTGCGAGCTACACGTTAACCGAGACTGCGTCTACTTGTAGGGAGCAaACTGCTGGGcTTACCAGGAGCAACCTCCGCCCCTCCTCCCCTCGCTATCTTGTGAACGTAATCTCGAACAGTGGATGATGTAGAGGGAAGATGGTGTTGACAGCTCGTTGTTTGAGGGGGGTGGTGGAGGGGCGGAAACCGCGGATCTGCTCGCTCGGTGGTGTGGGATATCTCGGAGGTGTGACCACTCGTCCAGCGTTAGCTGCTGCACAGAAGCCTCACTTGCTGGAGATATTTGACTGTGCAATGCAGTCGGACCGGAGTTGAACTGTTTGGTTTGTGTGTTCAAAGCAGAACAAGCTGGTCAACATGTCATTTATTacacacacgcacacacacacacacgcgtgttattttgtgtCCTCGATGCAGTCGCTTGCGGTGGTTCTGGTGTCGGTGATGTTTCGACTGTCGTTCTTGGCATCCGGGCGCTTGCCTTGACCACCTGACTCGCGAGGGTCTCAGGGTTGTCTGTGCGCGTCAAAGGTGACCCCGGTCAGACATGTCAGGTCGCCTGACCTTTGAACTTTGTTCACTGGGCAAGCGCCCGCCTCAAATGTGTTCCAGCTCCACCTCGTATGtCGCTGCATCACCAAAcACGGGGGgAACTGTTTGTCGTGTCTTGTGCTCAGCTCCAGGTTAACTTCCACAGAGTTTGCAGAGTTTACCCGGaGAAAGGAAGGAGAGCGCCCGTATTGTATGCTAATGAGTTTGGGTTTTGAGAGAGAGAAATGTGCTGGAGCCATTGCGGTTAGCAGACCATCACATGCTTTCTAGTCCCCCCGACCCCCTATCTGCTAAGAAACCATCAGTGGTTGGTGCCAGCCATATACATACACGAATGGTTTTCTTGTGcccccccccccccccccccAAAACAAACATGGCAAATGAATCGGAACGGGGCCCTCACGAACGATTAACCTCAACGTCGACTGGCGCTTcGAGTTCACGaCtcGTGTTATCAGCCGTGGGTTCGTCGTTtCTGGCAGAACGAGGCGGCCGATGACGCCTCCGGTAACTCGGTGGCAATTGTACAAATTGGAACGACTAGATTTGCACTGTGGCGCTCGTCTGgAGCGAGGGGAGTTTGAGTTTCATGGTCCGGGATGGGGGGGGGGGtGGGCGACGATTTATTTTGGTGAAGTTTGCGTGTGTGCCGGGTTTCCAAAAGACTGTTGGGTATTTTGGAACGCTCTTGTcGCCCTTGACTACGGCGCtGCGTTGCGGCTGACCTCCGCTCACTAGTTAgGAGAGTTCATTTTTGCAGAGGaTTTCTTTTCTTCTTTCCGCTGGGAATATTAAAGTGTAACTTTAACCTTCCCAGAGAGCGCTGGTCAACAATTTAAGCATAAACACGTTGCTCCGTGCAGGGAGAGAGCACACCGAGTGGACTTCATGATGCGTTAACGTAAGGGATCGGTATAGTTTTAAAGGCAGCTGTTTAACCCCCCTGTACTGTACTCTAGCTACTGTGCTTGGTCCAGCACCTTCTTGTCCGTTGGTGTCGCTGCTCTTCTTCATGACAGCTGGACTAATTTAGCAAATCAATGCTGCTTCCCTGTTGTTTTTTCTGTCAACAGGCTACATGTCCCTTTAACTTACCTAAGATCCTCGTGTGAATCCAGCTCCGAGGCAGCGGCTACTTAAATTTTGTTAAAAAAAATTACAGTACTTTTATCTCTTTATCACCGCCGAAAGATCTcGAaTGGAAGTTTTGGTAAAAGCAAAAGAAATGGCAGAAGCATAAGTCCTTATCTGCAGCAAACCTCATTCCAGTTAGTTAGGGCTGATATTTATCTGCAGAGAAGAATGCGAGTCCACACAGAACCGGGAGCTGACGTTGGCCATGCTGTGACTTTCAAAAGTTGTGAATGTGAATTTTCTCTCTCGTGTGCGTGTTCTACCCAACCTCTGTCAAACACGCACACAGTTGAGAGACATTTCATTTATTTATTGTGTCCTCCTCAAGGCCGTTCGCTGCTTTGATTCGCTCATCCTTAAGGCCGAGGGCAAAGTGGAGCCGGAGTTATTCTGCCAGCTCGGCCACTTCAACCTCCTCCTGGAGGATTACCCGAAAGGTGAGTAATCTCtCCTCCTCACACACACTATCCCGCTCAAGCGGTTCGCCGAGTCACGCTCTGCTCGCACgttttgttgttgttgtcgttgttgttgtcgtCCGGAGAGTATAAGCCTCCGGAGATGGCTCAGTTCCAGCTGGACATAAATGCTGACTGTcCACTCTTTCCTCGGTGGTGTTGTGGTGACATTGATAAATTCTCGGCTTCCCTTTTTCTTTAAAAAAAAAATAATTGCAGCATTGTCGGCATACCAGAGGTACTACAGTTTACAGTCAGACTACTGGAAGGTAAGCAATGcacacacacacacgcgcacacacacacgcTTTCTCGTTCACTTCGTTTCCACTCGCTCATGCGCAGGAAGCACGTATGaTCTCTGGTTGGTTGCACGCTGGCGTAAAATGCGGTTTTCGTTTTTTTGCGACTCCTTTCCTGTTTGGTCGACACTCTGCAGAGAGATTGACAGCTAgttgttgttgttgttgtttttgttcttCTgATCACTAAACTCTACAGCTGCAAGGTTATGTCAATATGTTTAaATTTTTCCGGAGACCTTTTTTTtATTACATTGCTATTTGGTCTTGTAAATCCGTATGATCAGGGTGTTTTATTTATTGTcGCTCTTTGTCATAACAACCTTGCGCCTCTCTCCATCCCACCCAGAATGCTGCCTTTCTGTATGGCCTGGGGATGGTCTACTTCCACTATAATGCCTTTCAGTGGTGAGTACCAaCTGTCTCTTTATGTATTTGCATAAACACAGACCACTCCTCCTGGAAACGCTGCTGACTCTCTGATTATTTTTTAAACGGGGCAAAAAAGCCTGCACGCGATCACAGAGTTGTAGCCTGTGTGACGTGTTCATGTGTGCAAGCTGGGGGGGAACCGTGCGAGTGTGAAGCTGTCCTATGTTGTTTCCATGGTGACACCACAACCACAGAGGAATCCGCGAGTGTAAATCTGAAGAGATGAGAAGCGGCAAGAAGACGCAAGCGTCAGCAAATGCATCTATTGTCCTCGACGGCTGCAGGCAACATGCAAATCCAGTATTTTGAAAGACACCCAAGGACACCCTGCTCGCCTGCTACTTTTCTAATAGCAAGCACCTTAATGTACTGCCCTtcctcctcctcctcctcctcACGTGtTCTCTGTTGGGTCACCGCAGGGCGATCAAAGCATTCCAGGAGGTGCTGTACATTGACCCAGGTTTCTCCCGGGCCAAGGAGATCCACCTACGCCTGGGTCTCATGTTCAAGGTCAACACAGACTACGAGTCAAGCCTAAAGGTCGGTGAAGAACGATTTAAtgatgcacgtagattagcacgtgtgtgtgcgtgtgtgtgtgtgtgtgtgcgtgtACTGATTTCTACCCGTGTTCTCTCTCAGCATTTTCAGCTGGCTTTGATTGACTCCAACCCCTGCACTTTGTCCAAAGCTGAAAGTAAGCACCTTTTTTATTCATCTCGCATGTTTATTTTTTTATTTTTTTTATTAATAATATTTCTGTATCTGTCTTCCGAATAGTTTTTTCAAGCAGAGCTAATATATTACAAATGAAGCCACTTTGAGAACAAATGTTTTTTAACACCTTAAATGGGCATCGGCCAAAAGCAAAGATGGCAAACTATCTTAGTTCTTTCAACCTCTGCAAACTCTTCACcctttcacaataagagccttgcattcgtcactgtgttgccgggaaggagctcaaattcccagcataaggaaacccgattagatggctgtacagtagctcgggggctgtgcagcagtTTGGATGTTTATCATGTGATGCACCGCTCGGTGGCTCCTGGAATGGGAAGAACAGCAGCGGGGGAACTCAAACATCTCGTTGTGTTCACTGTTAGATTATGTTCAGCTGTTGGAGGGGTTCAGCACTATCATAATCGTATATACCGTTGCCATCTCATCCTCCTCCCGGTATCTGTTACCTTGACAACATCTACATTTTCTTTTTTTGCACCAGCGTTTGCCTCGCTGTACACCCCCCACACTCACTTACTCACTTACACACACAGACGTAGCAAGGGCAGCCCCGtctctctctctctttatctctctctcCCCCCCCCCCCcACCCATCTCCATCTGCTGAGAGTCACTCAGGCAGCTTAGATCAGACACTGCAGCGCTCCAGACAAAGGAAGGTGCCGCAAGGAGCACAGCCACCTTTCTGCTCCGGTACACTCAACGTAGACGGGCAAACTTGGCTTTCCGACGCCTATTTATTGACAACGTCAAGGGGAACAAGaggaggactaaccaataggaggactaaccaataggaggactaacGCTCCTCTTCAATAACCTCTACTCATCATGTTTCCTCTTCTTTTCCTTTTACAGTTCAGTTCCACATCGCTCATTTGTATGAGATTCAGGTAAATGCTTTTTGCTTCTTTTTTTTCTTTTTATTCAATTTATTGATTCTCCCAAGGACACGAGCAATTGCATTTTGATTTCTGTCATTTGTAACTGAGCCGGTATGTGTTGATTGAATGTAGTCGATGGCAACGACTCATAACTCGGGCAGCACACAGCGGAGGGAAAGCCCGGTTTCCCCCCCCCCGTATTTTTAACCAGGTGCTGACACATTTTGAGGAGGGAGCAGGGTGCATGAGTGGGTGGCGTGCGGGAGGGGATGGGAGATTACTCTCAGCCGATCTGTCGGGGTTGCCACGGAAACAAGAAAGTCTCCCCCCCCGCCCCGCCCCTTTTTATATGCTGGTGGGCTCCCCTCTTTCGTTCTGCTGGTTTCAGTGGAGAAGTACAGTAGCGCTACTGCAGCGCGTTGGCTTACTTGTGCTGTGTCAGAACCCAGCGCTCCAGTGGGAGGGGCTTACTGTCAGCTGGTTGGAGGGAGTGACCTGGAGGGGGGAAGTCGCAGATTTTCAGTTTGAATATTGACTGTTATTCCTCACCCCTCCCCTCTGATCCAGAAGAGATACCGGGCTGCCAAGGAGGCTTACGAGAGCCTTCTGCAGACGGAGGAACTTCCTGCACAGGTGAAGGCCACGACCCTGCAGCAGCTAGGTAAGAGCGTGCACAGCACCATAGATTCTTTTCTTGTTTTGCCTTTACGGGTATTTGGGCAGTTGGTCAGTGGTCGATTTAATGCGAGTCGTCTCTCCTCCAGGCTGGATGCATCACACGGTGGAGCAGCTCGGGGACAAAGCCGGCAGGGACAGCTATGCCATCCAGTGTCTGCAGAAATCTCTGGAGGCCGACCCCAACTCCGGACAGACCTGGTACTTCCTTGGCAGGTACGTCACGCATCCACAACACCAGGAGATGAAGTAACCGAGCTGCATGCACGAGTTTCTTGACACGCGTCCTGTTGCATGAATGTTTTGTGTGTGTGTGTCGTGGCGCGACGCTCACAGCCTGTGTGTCTCTTGCAGGTGCTACTCGAGTATTGGGAAGGTCCAGGACGCTTTCATCTCCTATCGGCAATCCATAGACAAATCAGAGGCCAGTGCAGATACCTGGTGCTCTATAGGGTAAGGGTCCACTTTATCAGTGTGGTGCTATCGATGCCTAAGAATGTGTGTGTGTGGGGGTGGTGCATGAATGGACAAAAAAATGCACGCTTTGCTCATCTCTCCATCTTCATCATCGATTCCTCCTCCTTTGTCGCTCCCTCTTTGCCTCCCTCACTCCCCCTCAGGGTGTTGTACCAGCAGCAGAACCAGCCCATGGACGCCCTGCAGGCCTACATCTGCGCCGTGCAGCTGGACCACAGCCACGCCGCCGCTTGGATGGACCTGGGCACGCTGTACGAGTCCTGCAACCAGCCGCACGACGCCATCAAGTGCTACATCAACGCCACGCGCAGCAAGGGCTGCACCAACACCACCGCGCTGACCCACCGCATCAAATGCCTGCAGGTGGGTGGgGAGGGGGGCGGGCAAGGCGAGGAGGCGCCCGTGCGATGGCCGTTTGGATGCAGCTCCGGTTCGATAACCCTTTGTGCGGCGATAGCGACgATGCAATCGTGCGGCGTGTCTGTCGCCGTCGCTGCCTGCGCTGCTGCTCGGAGTCTCGGCTCGGCTTCTTCTGGTGGTGATGAGGGAAAGAAAATGGCGGCGGGAAAAGCGAGTGAAACAGAGGAGGACTTTCCGACACTGACAGCCCCGGAGAGGGACAGTTTGGCCGCGATCGACAGCTCACTGTTTGGATTTCAGAAGCTTCATGAAGATGGCGCCAGAACGAAGGCCCTGTTGATTAAGGCCGTTCGCTGCTTTGATTCGCTCATCCTTAAGGCCGAGGGCAAAGTGGAGCCGGAGTTATTCTGCCAGCTCGGCCACTTCAACCTCCTCCTGGAGGATTACCCGAAAGCATTGTCGGCATACCAGAGGTACTACAGTTTACAGTCAGACTACTGGAAGAATGCTGCCTTTCTGTATGGCCTGGGGATGGTCTACTTCCACTATAATGCCTTTCAGTGGGCGATCAAAGCATTCCAGGAGGTGCTGTACATTGACCCAGGTTTCTCCCGGGCCAAGGAGATCCACCTACGCCTGGGTCTCATGTTCAAGGTCAACACAGACTACGAGTCAAGCCTAAAGCATTTTCAGCTGGCTTTGATTGACTCCAACCCCTGCACTTTGTCCAAAGCTGAAATTCAGTTCCACATCGCTCATTTGTATGAGATTCAGAAGAGATACCGGGCTGCCAAGGAGGCTTACGAGAGCCTTCTGCAGACGGAGGAACTTCCTGCACAGGTGAAGGCCACGACCCTGCAGCAGCTAGGCTGGATGCATCACACGGTGGAGCAGCTCGGGGACAAAGCCGGCAGGGACAGCTATGCCATCCAGTGTCTGCAGAAATCTCTGGAGGCCGACCCCAACTCCGGACAGACCTGGTACTTCCTTGGCAGGTGCTACTCGAGTATTGGGAAGGTCCAGGACGCTTTCATCTCCTATCGGCAATCCATAGACAAATCAGAGGCCAGTGCAGATACCTGGTGCTCTATAGGGGTGTTGTACCAGCAGCAGAACCAGCCCATGGACGCCCTGCAGGCCTACATCTGCGCCGTGCAGCTGGACCACAGCCACGCCGCCGCTTGGATGGACCTGGGCACGCTGTACGAGTCCTGCAACCAGCCGCACGACGCCATCAAGTGCTACATCAACGCCACGCGCAGCAAGGGCTGCACCAACACCACCGCGCTGACCCACCGCATCAAATGCCTGCAGGTGGGTGGgGAGGGGGGCGGGCAAGGCGAGGAGGCGCCCGTGCGATGGCCGTTTGGATGCAGCTCCGGTTCGATAACCCTTTGTGCGGCGATAGCGACg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF13432	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR051630	Family	Transcriptional Corepressor and Histone Demethylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14017	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0007507	Biological Process	heart development	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0031490	Molecular Function	chromatin DNA binding	Interproscan
GO:0044666	Cellular Component	MLL3/4 complex	Interproscan
GO:0071557	Biological Process	obsolete histone H3-K27 demethylation	Interproscan
GO:0071558	Molecular Function	histone H3K27me2/H3K27me3 demethylase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-