Gene detail

Detailed information of HS12402 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS12402	ORIGIN RECOGNITION COMPLEX SUBUNIT 4	chr14	2941281	2944366	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS12402

ATGAGTAAGAGGAAGATGGAAAATATCCGTTTGCCAGTCGGGGAATGCATCTCTCAGGTTTGAGTCTTGACTCGCTCTCCTCTAACgtgttcagtgatgaagtgtcactgtggtgtgttcagggacgaagtgtcactgtggtgtgttcaggggtgaagtgtcactgtggtgtgttcatggatCTTAAGGTTCAGGAGATGTTGAGGGAGCGGTTCTGTCGTCAGAAGCTCCCCGACAGGCCGGAGGGAGTGGAAGCTCAACACAAGTAGGTTTATTTAATTAAAGTGCTTTAAAATAATCACTTGTACACCTTACAACTGTAGGACTCGCAACTCCAGGGGCATTGTGGGTATTGTAGTCTCGCTCTGTGCTTTCAGACACCTCCTGGAGCTGCTGAAGAGGACCGCCGTCCACGGGGAGAGCAACTCGGTGCTCATCGTGGGGCCCAGAGGAGCAGGAAAAACCATGGTGAGCCTCTGCAGCCGGTCAGGTGCACCAAAAAGAGCTGACGGGGCAAATAAAATAAGACATGGCGGTGGAGAAGATGATGAAGTGTGTTTAAGTGTGTGTGAACCCTGGGGGGCGGCTGTGTgTGCAGCTGCTGAAGTGTGTGCTGCGAGACCTGCAGGAGGAGAAGGAGGCTCATAGAAACCTGCTCCAGGTCCACCTCAATGGTACCAGTCCAGATCGGCGTGGCGTTGATTCTGAATTTAACTCTATAAACATTCATTTTGTGTGATTTGTTGTCGTTTACTTGAAGGTCTCCTGCAGACGGACGACAGAATCGCCTTAAAGGAAATCACGCGGCAGCTCCACCTGGAAAACGCCGTCGGGGACAAAGTGTTTGTGAGTTATACCACATTTTATTTTGAcggggttcgttcggttttggaaaacctggaaaagtcctggaatttaaaaaatggttatttcctccaagaaagaaaatctaaaaacttttggaaaagtcatggaaatgtgtgaagttcatagaattcacgctgagttttaaataattaatttgcttttaaaagaaatataagccggcgtacgctctcatgccagcgaacgcacctcaactgaaaagacttaaatgtttattgttttaataaaactattgtctcattcatttgagtcatttaagattttataaaaaggttttttaaaatatgacattttctcactttatcaAAAGTCCTGGACACCCAGTGGCCACCGTGTGTATGACACCTGTTTAACATTCATGATCTATTAAACCCTCCTCTGCTTCCTTTCAGGGCAGCTTTGCGGAGAACCTGGCCTTCTTGTTGGAGGCTCTGAAGAAAGGTCAGAACCTCGAGGCTCTGGACTTTGAGAGCGTTGCTTTTCCTTCGGGGGCCTCACGCTCCTCTGGTTCTGCCTCCAGGCGACCGCAGCAGCAGCCGCCCGGCGCTGTTCGTTCTGGACGAGTTCGACCTGTTCGCCCACCACAAGAACCAGACGCTGCTCTACAACCTGCTGGACGTCTCCCAGTCCGCCCAGGCTCCCATCGCCGTGGTCGGCCTCACCTGCCGGCTGGTAAGCCCCGCCTCCGCCGCCCACGCCGCGGTTAACGCCGGCGACGTAACGGCCTTCTCTTCCAGGACGTCCTGGAGCTGCTGGAGAAGCGCGTGAAGTCTCGGTTCTCCCACCGTCAGATCCACCTGCTGAGCAACCCGACGTTCGCCCAGTACCTGCGGCGGGTCCGGACCCAGCTCAGCCTGCCGGGCCACTTCCCGGACGGCGAGTTCGCTCTGGAGTGGAACGCCGGCGTAGAGGTGAGTTAAAAGGGCCGGGGCCGGTCTCGTCGGCGTGGGGTTCACCGCGGACCCGTGTGTCCTCAGGCTCTGTGTGAGGACAAGTCGGCGGAGGACGCGTTACGGAGACACTTCAACTCCAGCAAGGACTTCCGCTCAATGCACATGCTGCTGGTACGACCCCCCCCCCCcTGTGGCCGACCCTCACCTGGCCGCCGGACACACCTGACCCTCGTCTCTCTCTCCGTCTCCAGATGTTGTGTCTGAGCCGGGTGTCCGCGGCCAAACCCGCCATCACACCTGCAGACCTGCTGGAGGCCAGCCGGCTGAGCTTCGCCGACGCCAAGGCCAACATGCTGCACGGTAGAACCCCCCCCCCCTCACTGGGGCCTCTGTCTAACGAGGTCACACCCGTGTATGTGTGTATGTGAGTGTTCTCTTCTCTCTGTCCGTAGGTCTGTCCATCTTGGAGCTGTGCCTCGTCATCGCCATGAAACACCTCAACGACGTCTACGAAGGACAGCCCTTCAACCTGCAGATGGTTCACAACGGTACGCCCCGGAAACACGACGTCTGGGCACAtAAGAGAAAGCACTTCaaaataatataattaataataaaaaaatatataatatatataaaaatatatatataatgaaaaaaaatattagaataaataaataaatagtggaattaaaaagaatgaaaaaatgatatatattaaagaaataataataacgaaaaataatcatgaacaaatataaaaatagaatgaaaaaatggatatatataaaatgagaaaaatatatatatatttaataataaaaataaataaatTGTATTAATATTTTCAAAAGAGGAAAGTACTCATGAGACAACTAAATTAATCAATAAAGGAAATAAGAATTTAATGTATTAAGCCCATATGTCTATTTTCTTCTGTTTTTTAGAGTTTAAGAAGTTCCTGCAGAGGAAGTCaAACTCCATGTATAAATTTGAGCAGCCtGTCATCTTGAAGGTGCGTATGAAGCGTTTAAAGAGTCCTGTGATGTTTACTGAGCTTCACAGGCCCTCCAGCTCTTGAGGAAGAAAGATACACAAGTACATTTATATATATTTACACGTCCTCAGGCCTTCGAGCACCTGCAGCAGCTGGAGTTCATCCAGCCGGTCGACAGCTCGTTGGCCAAAACTCAGAAGGAATACCAGCTGATGAGGCTCATGCTGGACCACAGTCAGATCATGGAGGCCCTGCAGAAGTACCCACAATGCCCCACGGACGTCAAGCAGTGGGCCATGTCGGCGTTCGGCATGAGTAAGAGGAAGATGGAAAATATCCGTTTGCCAGTCGGGGAATGCATCTCTCAGGTTCAGGAGATGTTGAGGGAGCGGTTCTGTCGTCAGAAGCTCCCCGACAGGCCGGAGGGAGTGGAAGCTCAACACAAACACCTCCTGGAGCTGCTGAAGAGGACCGCCGTCCACGGGGAGAGCAACTCGGTGCTCATCGTGGGGCCCAGAGGAGCAGGAAAAACCATGCTGCTGAAGTGTGTGCTGCGAGACCTGCAGGAGGAGAAGGAGGCTCATAGAAACCTGCTCCAGGTCCACCTCAATGGTCTCCTGCAGACGGACGACAGAATCGCCTTAAAGGAAATCACGCGGCAGCTCCACCTGGAAAACGCCGTCGGGGACAAAGTGTTTGGCAGCTTTGCGGAGAACCTGGCCTTCTTGTTGGAGGCTCTGAAGAAAGGCGACCGCAGCAGCAGCCGCCCGGCGCTGTTCGTTCTGGACGAGTTCGACCTGTTCGCCCACCACAAGAACCAGACGCTGCTCTACAACCTGCTGGACGTCTCCCAGTCCGCCCAGGCTCCCATCGCCGTGGTCGGCCTCACCTGCCGGCTGGACGTCCTGGAGCTGCTGGAGAAGCGCGTGAAGTCTCGGTTCTCCCACCGTCAGATCCACCTGCTGAGCAACCCGACGTTCGCCCAGTACCTGCGGCGGGTCCGGACCCAGCTCAGCCTGCCGGGCCACTTCCCGGACGGCGAGTTCGCTCTGGAGTGGAACGCCGGCGTAGAGGCTCTGTGTGAGGACAAGTCGGCGGAGGACGCGTTACGGAGACACTTCAACTCCAGCAAGGACTTCCGCTCAATGCACATGCTGCTGATGTTGTGTCTGAGCCGGGTGTCCGCGGCCAAACCCGCCATCACACCTGCAGACCTGCTGGAGGCCAGCCGGCTGAGCTTCGCCGACGCCAAGGCCAACATGCTGCACGGTCTGTCCATCTTGGAGCTGTGCCTCGTCATCGCCATGAAACACCTCAACGACGTCTACGAAGGACAGCCCTTCAACCTGCAGATGGTTCACAACGAGTTTAAGAAGTTCCTGCAGAGGAAGTCaAACTCCATGTATAAATTTGAGCAGCCtGTCATCTTGAAGGCCTTCGAGCACCTGCAGCAGCTGGAGTTCATCCAGCCGGTCGACAGCTCGTTGGCCAAAACTCAGAAGGAATACCAGCTGATGAGGCTCATGCTGGACCACAGTCAGATCATGGAGGCCCTGCAGAAGTACCCACAATGCCCCACGGACGTCAAGCAGTGGGCCATGTCGGCGTTCGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13191	AAA_16	AAA ATPase domain	Domain	Interproscan
PF14629	ORC4_C	Origin recognition complex (ORC) subunit 4 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR016527	Family	Origin recognition complex subunit 4	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032705	Domain	Origin recognition complex subunit 4, C-terminal	Interproscan
IPR041664	Domain	Orc1-like, AAA ATPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12087	ORIGIN RECOGNITION COMPLEX SUBUNIT 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000808	Cellular Component	origin recognition complex	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003688	Molecular Function	DNA replication origin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005664	Cellular Component	nuclear origin of replication recognition complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006270	Biological Process	DNA replication initiation	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-