Gene detail

Detailed information of HS12303 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS12303	LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN	chr14	782242	793918	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS12303

ATGGAAGACTCGGCTGCAGGTAGAACCGCCATGGGGCCCCAGGGCCCGGGGGGCCGGAAGAGGGTCCCGAACCAGGAGAAGCGGACCGCCGAGGACGAGACTCTGAACCAGGTCGCACGAGAGGTGaacaataacaacaataataaacatgatatcataataataataataataataacaatagattaatacaacaacaCATTCATGGTTTTCTGAAAGTTCtttgttttatttatttgttttatttTGAAAATATATCAATGAAAGAATATGTATTGTATATATTATTATATCTCCTTGATGTTGGAACAAAAGCCTTTGCTCATTGTGTTGTTGTTTTTGTCCTACTTCTCTTCTTCTGTGGTGCTTCAGTTACATCATTATGACGCTTTTAATTGGTCCAAAGCGGCTTTTATTGTGAAGGTCAGGCAGGAAGTGGAAACCACACTTTATTACACCTCccccccccctctctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtgtctgtgtgtgtgtctctgtgtctgtgtgtgtgtctctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgacctcaATTCTTTAATCCTCAACAGCACAAACAAACATTAATCTGCATCTCAACATGAGACTCATCCTCCTCCTCTCTTCATTGATCTTCCTTTATGAGTCATCAGTAACTGGTTGATCCATAACCAATAATCAGAGTATTGaTCCGTGCAGGCGGAGGCCCGGCTGGCGGCGAGGAGAGCGGCGAGGGCTGAGGCCCGAGAGATCCGGATGAAGGAGCTGGAGAGGCAACACAGAGaggtgggctcttattgtgaaaagcaccagagacaggtgggctcttattgtgaaaagcaccgaagacaggtgggctcttattgtgaaaagcaccgaagatatgtgggctcttattgtgaaaagcaccggaggcaggtgggctcttattgtgaaaagcaccgagacggatgggctcttattgtgaaaagcaccggagacaggtgggctcttattgtgaaaagAGGGGTCAGGACCGTCAGGTGACCCAGGTCTTCATGAGGGTCAGATAACTTTATTGATCCGTGTCACATGATCAGACATGAGGTTAGAGGTCAAAGGTCAgactgccttcagcaggaggcctcgtgcttctctctggtgagtctgctgctttatatatatatatatacatatatatacataggttatacatatatatatatatatatgtgtgtatatacaggactgtctcagaaaattagaatattgtgataaagttctttattttctgtaatgctattaaaaaaacaaaaatgtcatgcattctggattcattacaaatcaactgaaatattgcaagccttttattcttttaatattgctgattatggcttacagcttaagaaaactcaaatatcctatctctaaatattagaaaatcatgaaaaagtatactagtagggtattaaacaaatcacttgaatcgtctaattaactcgaaacacctgcaagggtttcctgagccttgcaaaacactcagcttggttcagtaaactaaatcacaagtatggggaagactgctgatctgactgctgtccagaggaccatcattgacaccctccatcaggagggtaagacacaaaaagaagtttctcaaagagcaagctgttcacagagtgcagtttcaaagcacatccacaaaaagtctgttgaaggggaaatgtggcaggaaacgctgcacaaccaagagagatgaccgcagccttaacagcattgtgaagaagagtcgcccagaatttggggagcttcaaagacagtggactgaagctggagtccagttataaaaagccactgctcacagacgtgcccgcctaaggggatacaatagccgtattcccgtggtcaagccacttctgaactcaagacaacggaagaagcgcctgacttgggctatggaaaagaagcactggacagttgcagagtggtccaaagtcctcttttcagacgaaagcaagtgttgtatttcatttggaagtcaaggcgccagagtctggagaaaggctggagaggcgcaaaatccaagttgcttgaaatccagtgtgaagttcccacagtcagtgatggtttggggagccatgtcagctgctggtgttggtccactgtgtttcatcaagtccagagtaaatgcagctgtgtaccaagagattttagagcactacatgcttccgcctgctgaaaagctctatggagatgaggatttcattttccagcatgatctggcacctgcccacagtgccaaaaccaccagtaactggtgtactgaccatggcattactgtcctcgattggcctgccaattcccctgacctgaaccccatagagaatttgtggggtattatgaagaagaagctgaaagacaccagacccaacaatgcaaatgagctaaaggccgctattgaagcatcctgggcatccataaaccctcagcaatgccacaggctgattgcctccatgccacgccgcattgatgcagtaatccgtgcaaaaggattcccaaccaagtactgagtgcattaatggacattttcaaatgtttgattttgttttgctgttataaatcttttttttacttggtctgaggaaatattcaaattttatgagataggattttagagttttcttaagccgtaagccataatcagcaatattaaaagaataaaaggcttgcaatatttcagttgatttgtaatgaatccagaatgcatgacatttttgtttttttaattgcattacagaaaataaagaactttatcacaatattctaattttctgagacagtcctgtatatataTTGCTGCTACTTTATTTATATTTATTTGTCTTCAATCTAAAATGTTGTATTCAACATGAATATTAGTTAAAGCTTTATGTATAAtgtagtatttactgtagtatctactgtagtatttactgtGGTCTACTGCTTCAGTGTAGTATTGCGTAAGGTATTTCTATCCCTGTAGTGATGTGTGTACTGTCCCTTTAAGAGCCACTGAGtgctctctgacctctgacctctgccctctgtctcctccctgctgcAGCTGTCTCTCAGCCACCAGGTACAGCTCCTCACACAGGCCCCGCCCACAAAACCACCACACCTCTTCATCTCCTTCTCTCGTCACTTCTGATGTTTTCTCTTCCTCCTCTTCCTCCTGCTTCCAGAAGCATTATGGTCTGGATAATAAGTGGGGTCACATTGAACAGTGGATGGTAGGAttcttcttcttcttcttttcatgtgtctgtgatcgtagctgttgttgttgttgttgtttgttCTGCATGCGCTCAGACTCTCATGTTGATGACCGGCCTGTTCAACCCACTAGAGAAGAAGATGAAGATGCTCGTTGTCCATGGTCTGAGCCGTGTCCCTCAGCTCGTCTTCAGGCGCTTTGCCCTGGTTCTGGTCTGCCAGGCAGAGCTTTACCTTCTTCTTCGTGTCTTTCAGGAGGACAGTGAGCGGTATGCTCGGCCCCCACGGAGACACACCTCGGTCTGTACGCCCtcctcttcttcttcttcttcctcttcctcGGTGGTTCACTGTTGTCTTGTGTCTGTAGATGTCTGACGATGAAGAGAGGATGTCAGTGGGGAGCCGGAGCAGCCTGAGGGTGAGTACTatgagagtactacgagtactagtacaccatgagagtactacgagtactagtacactacgagagtactacgagtacaccatgagagtactacgagtactagtacaccatgagagtactacgagtacaccatgagagtactacgagtactagtacaccatgagagtactacgagtacgagtacaccatgagagtactacgagtacaccatgagagtactacgagcacaccacgagagtactacttagtgcaccatgagagtactacttagcacaccatgagagtaccacgagcacacacaccatgagtaccacgagcacaccatgagagcaccacgagcactagcacaccatgagagcaccacgagcactagcacaccatgagagtaccacgagcacaccatgagagcaccacgagcactagcacaccatgagagtaccacgagcacaccatgagagtaccacgagcactagcacacatgagagtaccaccagtacttagcacaccatgagagtaccacgagcacaccatgagagcaccacgagcactagcacaccatgagagtaccaccagcacaccatgagcacactagagcaccatgagagtactacagcaccatgagagtaccacgagcagcaccatgagagtactcactgagcaccacgagtacaccatgagtaccacgagtaccagcacaaccactgagagtactaccagcaccatgagagcaccacgagtacaccacgagtcacgagcaccactgaggtaccacgagcactagcaccaccagagtagcacactgagccactaggcacaccatgagagcaccacgagcacaccatgagagcaccacttagcacaccatgagagtaccacgagctagcacaccatgagagcaccacgagcacaccatgagagtaccacgagcagcacaccatgagagtaccacgagcacaccatgagagcaccttagcaccagcacaccatgagagcaccacttagcacaccatgagagtaccacgagcactagcacaccatgagagccactactagcacaccatgagagcacgagcacgagcacaccatgagagcaccatcacgagcaccatgagcaccacgcagcaccatgagcacagcagtgcacaccgagagcaccagcacaccatgagagcaccacgagcaccagcatcacatgagagtaccacagcactacaccacgagagcaccacgagcaccagcacaccaccatgagagcaccacgagcaccattgagagcaccatgagagcaccatgagcaccacgagcaccatgagtaccacgagagcaccatgctagcaccatgagagcaccgagcacgagcaccatgagagtaccacttacagcacaccacgagcaccaccacgagcacaccatgagagcacgagcacgacaccacgagagcaccacagtagcaccacgagagcaccacgagcacaccatgagactgacgagcacaccatgagcacaccacgagagcaccatgagcaccacagagcaccacgagcaccatgagagtaccacagagcaccagcacacccagagcacaccacgagcactagcaccatgagaactaccaccagcaccacttagagcaccacgagcactagcacaccacgagagcaccacagcagcacaccacagagtaccatgagcactagcacaaccacaagagtaccacgagcaccagtacaccatgagagcaccacgagcaccaccagcacgagcacaccacgagagcaccacgagcaccactgagagcaccacgagcaccacagtgcatacaccacgagtaccacggtgagcacaccacccagcaccatgagcaccagcaccacgagagcactatgagcactagcacaaccaccagagcaccacgagtactacgagtactagtacaccacgagagtactacgagtactagtacaccacgagagtactacgagtactagtacaccacgagagtactacgagtactagtacaccacgagagtactacgagtacaccatagaggtactaTGAGAGTGTTAATACCtccctctttccttccttcctatcctcctttccttctctctctccttccttttcactccccttcttccttccttctctcactctcgttcctCATTcctccctccctccctccctccctccctctcctcAGCCCTCAGACTACAGTGGTTTCCTAGGCTCCTCCTCCAGAGCGTCCTCCAGGGCCGGCTCAGCTCGTGCGAGCCCAGTGGTGAGCTCTCTTCTCTGGGTGTCTGTCTGACCTCGCCCCCCTGTCTGCTGGTTCTTCTCTCTAGTcaacaacaacaacaacattaacaTGGGTTTGTGTGTTCAGGTGGAGGAGCGACCCGACAGAGACTTTATGGACAAAGTGAGTCACTTtaaagatgttatagattataaagatgttataacgatgttataaagatgttataaagCCGTTACCGGGCTGGAGACCCTCCTCAGCTGGTGATGATGATGATGGTGTGTTCTTCCTCAGGGTTCCAGGACCGCCTTCACGCTGTCCGCCGCCACGCTGGCGTCTCTGGGCGGAGCTTCATCTCGCAGAGGAAGCTGTGACACGTCGTTGTCCGTGGAGACGGAGGCGTCCATCAGAGGCATGAAGGTGACAGGACCCTTCCATTTATTTCATAATGGGATGAGATtattaacaacaacaacaacaataataacattaataataacaacattaatcacattaataataacaacattaacagcattaGTCACACGCCTGCAGGACTCCCTGGCCCAGGCCGAGGACCGGTTCCGGAAGGCCATGGTCTCCAGCGCTCAGCTCCACAACCAGAAGTCCACTCTGATGTATCAGGTGGAGAACCTGAAGGAGGAGCTGGGCGACATGGAGGAGCTGCTGTGGGAGTCACGGAGGCTCTGGGAGGACCGCACCAAGGTACCCCGTTCCCTTTATTCTGTCCATCgatcaataactcctgtgtgaccggatcaataactgatgtgaccggatcaataactctcatgtgaccggatcaataactctcatgtgacctgatcaataactctcatgtgacctgatcaacaactcctgtgtgaccggatcaataactctcatgtgacctgatcaataactcccgtatgacctgatcaataactcccatgtgacctgatcaataactcatgtgaccggatcaataactctcatgtgaccggatcaataactctcatgtgacctgatcaataactcccatgtgacctgatcaataactctcatgtgacctgatcaataactctcatgtgaccctgatcaataactcccatgtgaccctgatcaataactcccatgtgaccctgatcattaactcccatgtgacctgatcaataactctcatgtgacctgatcaataactcctgtatgaccggatcaataactcccgtgtgaccCCAGGAGCTGGAGCGTGAGCGTCAGGCGCGCCTCCTTCTGCAGCTCCAGTTCACTGAGATGGAGGAGACGGTGAGGCGCTGTGAGGAGGGGCTGAAGGTCAGTTCACcatcaatcaatacatcaatacatcgatcaatacatcaaaacatcaatacatcaatcaagacatcaatacatcaataATTGATTCCTCCAGATCAATAATCTCATCTCACATGTTATGAGATATgcggctgtagctcagtgggtcaggggtcaaggtcgtgggttcgatccccgctctccccattagtagcaagtggaagtgtccttgagcaaggcactgaagccccagctgcttcactgcagccgctgctccttcatgacggaggaggggtccatgcagagaactaacttccccttggggatcaataaagtatatgaaataaaaaaataaaaaaaatgaattaaaaaaatGAGCTGAACCTCTATATGCTCTCcctgctcctcctcctctcctcctcctgctcctcctcctctccctcctcctcctctccctcctcctgctcatccccctgctcctcctcctgctcctcctctccctcctcctgctcatcctcctgctcctcctcctctccctgctgctcctcctgctcctctcctcctcctgctcctcctctccctcctcctgctcatcctcctgctcctcctcctctccctgctgctcctcctgctcctccAGGAGGTGTCTGACCTCCGCTTGAGGAGCAGTAGTTACTCCCAGGAGGTGTCTGAACTGCAGGAGGTTCTTCAGTGGAAGGAAAAGAAGATGGAGGTACGATGAAGATGAAACCATGATGATCcacttcctgtttaacttccggtttgacttcctgtttcacttcctgtttcCCCTAACTAATATTTCAAATAGTCTTTTCTTTCGCCTCTCTTTTTTCTCTTCTtcctcttcctcctcctcctcctcctcctcctcctcctcttcctcTCTCAGGCGTTAGAGAGACAGAGGGAAATCTCTGACATCGTTCAAATCGAACGCGACCGGCTCAGAAACGATGTCGTCAGACTGAGAGACTTACTGAAGGTAAAgagtgatgtcacccgagtgatgtcacccgagtgatgtcagcgccttcacctgagtgatgtcacctgagtgatgtcacctgagtgatgtcacccgagtgatgtcacccgagtgatgtcagcgccttcacctgagtgatgtcacccgagtgatgtcacccgagtgatgtcagcgccttcacccgagtgatgtcacccgagtgatgtcacccgagtgatgtcacccgagtgacgtcacccgagtgatAATTGATAAATTGATTCATTGATTTCCTCCCTGACAGAAACACGGAGTCACCGTCTCTCCTGAGTTCTCCTCCAATGGGGAGGCGGCACCAGGCGAGGCCGTGGATGATGATGTCAGCGCAGAATCTGCCCCCCGATTGGCCGAGAGCACACTGGGTAAGAACCAATGAGAAGCTGTCCTCCTCCCCGTGGTCCTGACCTGTCCCCCTGCAGGACTGAAGACGCTGTGCGAGGACAGAGAGACGCTGACGGCCCggcgggaccagaacccaggggggcgggaccagaacccaggggggcgggaccagaacccaggggggcgggaccaCaGGCCGGACCTCCAGAGTGAGTCCTCTTCATCAgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctcctgggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttctgtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctccttctgtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctccttctgtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgagatgtctccttgtctcctctggtcttcttgtccctctgagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctccttctgtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctgtagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttctgtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtcctctggagatgtccttgtcttcagtgtcctctggagatgtctccttgtctcctctggtctcttgtccctctggagatgtctccttgtgtcctcttgtcctgtgatgtcctTGTCCTCATCTTGTGTCAAGTTGCCgtgtctcgtgtcctcgtcttgtgtcctcatctggtgaccttgtctggtgtcctcatgtcctcgtctggtgtcctcatctggtgtccttgtctggtgtcctcatgtctcttgtccgtgtcctcgtggaggtcaggtgactctgtttcaggtggtgtgtgaggccgagaagacctggcagggtgatggactcgaaGAAGCTCCACAGAGAGGTAGGAGAGgtcctgatgtccacttgtcctgatgtccacttgtcctcttgtcctgatgtccacttgtccagatgtccacttgtcctgatgtcctgatgtccacttgtccagatgtcctcttgtcctcttgtcctgatgtcctgatgtcctcttgtcctgatgtcctctcgtccacttgtcctgatgtccacttgtctacttgtcctgatgtccacttgtcctgctgtcctcttgtcctcttgtccacttgtcctgatgtcctcttgtcctgatgtccacttgtcctgatgtcctcttgtccacttgtcctgatgtcctcttgtcctgatgtccacttgtcctgatgtcctcttgtccacttgtcctgatgtccacttgtccacttgtcctgatgtccacttgtccacttgtcctgatgtcctcttgtccacttgtcctgatgtccacttgtcctgatgtcctcttgtccacttgtcctgatgtcctcttgtccacttgtcctgatgtcctTGCCTCCTTGTCTCCTCAGCTGCGCTCGGCTCTGGACCGGATCGGGGAGCTGGAGTTGAGCAACGTCCGTCTGTCCAGGCGTCTGGACAAGCTGAAGGCCAGCCGCAGCGCCCTGCTGGCGCCGCCCATGGAAGACTCGGCTGCAGGTAGAACCGCCATGGGGCCCCAGGGCCCGGGGGGCCGGAAGAGGGTCCCGAACCAGGAGAAGCGGACCGCCGAGGACGAGACTCTGAACCAGGTCGCACGAGAGGCGGAGGCCCGGCTGGCGGCGAGGAGAGCGGCGAGGGCTGAGGCCCGAGAGATCCGGATGAAGGAGCTGGAGAGGCAACACAGAGagCTGTCTCTCAGCCACCAGAAGCATTATGGTCTGGATAATAAGTGGGGTCACATTGAACAGTGGATGGAGGACAGTGAGCGGTATGCTCGGCCCCCACGGAGACACACCTCGATGTCTGACGATGAAGAGAGGATGTCAGTGGGGAGCCGGAGCAGCCTGAGGCCCTCAGACTACAGTGGTTTCCTAGGCTCCTCCTCCAGAGCGTCCTCCAGGGCCGGCTCAGCTCGTGCGAGCCCAGTGGTGGAGGAGCGACCCGACAGAGACTTTATGGACAAAGGTTCCAGGACCGCCTTCACGCTGTCCGCCGCCACGCTGGCGTCTCTGGGCGGAGCTTCATCTCGCAGAGGAAGCTGTGACACGTCGTTGTCCGTGGAGACGGAGGCGTCCATCAGAGGCATGAAGGACTCCCTGGCCCAGGCCGAGGACCGGTTCCGGAAGGCCATGGTCTCCAGCGCTCAGCTCCACAACCAGAAGTCCACTCTGATGTATCAGGTGGAGAACCTGAAGGAGGAGCTGGGCGACATGGAGGAGCTGCTGTGGGAGTCACGGAGGCTCTGGGAGGACCGCACCAAGGAGCTGGAGCGTGAGCGTCAGGCGCGCCTCCTTCTGCAGCTCCAGTTCACTGAGATGGAGGAGACGGTGAGGCGCTGTGAGGAGGGGCTGAAGGAGGTGTCTGACCTCCGCTTGAGGAGCAGTAGTTACTCCCAGGAGGTGTCTGAACTGCAGGAGGTTCTTCAGTGGAAGGAAAAGAAGATGGAGGCGTTAGAGAGACAGAGGGAAATCTCTGACATCGTTCAAATCGAACGCGACCGGCTCAGAAACGATGTCGTCAGACTGAGAGACTTACTGAAGAAACACGGAGTCACCGTCTCTCCTGAGTTCTCCTCCAATGGGGAGGCGGCACCAGGCGAGGCCGTGGATGATGATGTCAGCGCAGAATCTGCCCCCCGATTGGCCGAGAGCACACTGGGACTGAAGACGCTGTGCGAGGACAGAGAGACGCTGACGGCCCggcgggaccagaacccaggggggcgggaccagaacccaggggggcgggaccagaacccaggggggcgggaccaCaGGCCGGACCTCCAGAGTGAGTCCTCTTCATCAgtctcctctggtcttcttgtccctctggagatgtctccttgtctcctctggtcttcttgtccctctggagatgtctccttgtggtgtgtgaggccgagaagacctggcagggtgatggactcgaaGAAGCTCCACAGAGAGCTGCGCTCGGCTCTGGACCGGATCGGGGAGCTGGAGTTGAGCAACGTCCGTCTGTCCAGGCGTCTGGACAAGCTGAAGGCCAGCCGCAGCGCCCTGCTGGCGCCGCCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09738	LRRFIP	LRRFIP family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019139	Family	Leucine-rich repeat flightless-interacting protein 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19212	LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-