Gene detail

Detailed information of HS11948 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11948	TRNA-PSEUDOURIDINE SYNTHASE	chr13	14113047	14120852	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11948

ATGGCCGGGAACATCCACAACACCGCGGCTCCGATAGTCAGTTCTGTGTCTAAACTACAGTCGTTAAATGGATTGTTTGCGATATATAAAAAAAAAGGACCGACATCTGCAGACGTGTTAAATACACTGAAGGAAGTGTTGCTCAAGGGTAATGCGACAGGGGTCGGATCAGGAAATGGGTCTCGTGTCATCTGTTGAAGCTAACAGTGAAATGTTGTTGTGcAGAAGCTGGTGTGAAAAACCCCAACCCGCGAAAGAGGAAGAAGCAGAGCCTGAAGATGGGGCACGGAGGGACGCTGGACAGTTCTGCCAGTGGGGTGCTGGGTAAaAGAGAgGGgCGGGGATAGTGGGGAAGAGTGAGGGGGGGGGGGGGgtAAAagagagtgagacagtgggggtagagtgagtgagagagagcgatagagagagagtggtgagagtgggtaagaaagcgagagagagagagcgagagaCTCTCCAGATGTGCAGTTGTCTTCTGGCTGTAACATAAACAATGTAACACATGTTTTTATTTCCGGTGCACGTTTGGCTGCTTGTTGTCCTTATTTTTTTATACTAAAAAGTTGTATGTTAACTGTTGTCGTTTCTCaacctggcaacccttaatgtggaacctggcaactcttcatgtggaGCCTTGCTCTGTCATGGtCTTTTTTCACTACATGCTGACATGCTTACTAAATGAACCATAAAGCGGTCGATCAATAAATAACGAAAAGAAGAATGGTTAGCCCCGCCCCCTGATGTTAGGCCTGTGTTTGGTGTAATGAACGTGGCCACCTCTAGGGGGAGCGAGCAGGCCTTTGCTCACGCTGTCTCCATCTCTTTCAGTGGTTGGTGTTGGGAATGGCACAAAGATGCTCAGCACCATGTTGGCTGGTTCCAAGGTGAGTTCAATGGCACTTGTGTAACCAGTAAAAAACAAATGAAGCTAAAAGAGCTTTATTTTCTAAATTGTCAAAGACTTCTTCTGAAACAAAAGGAGACAACTTCATTGGGATCCACTATATCACAGTGGCACCTGGTGAGAATGTCTTGTCTTTAAAATTATCTCCACTTACAAGCTTCGCCAGGTCCAAACTTAAGAATCTTTCTTGCCTAATTTACAAACGCTCGAACATCGTATGCCAGAAATAATAATGCTTAAAGTAACAATGCAGCATAAGGTGCCGAGCGAGAGACGCCGTCTGACGTGATTTTGACCACATGTGGCCAAATGCTGTCGACCATCGATCAGATTTATGGTTTTTTTCCCCTATATTTGTAACGGGTATGTGCTCAATTAATATTTTGTTTTGGGAGTATTTCTCTGAGGACCCAATGACACCCGCTCCCGTTATAGTCGTATGGAGGTGTTTTGAAGTGAGCCGTATCAGTATTAACAGTTCAGATCAGCGGTCATAACGAGGTGATTGGCGCCGTCTGGTTTCCAGAAATACGTGGCCGTGGGGGAACTGGGGAAAGCAACAGACACCCTGGACGCCAGCGGCAAAGTGGTCCTGGAGGAAGACTTCGGTAAGCACAGAGGTCACAGAGGTCACAGCTCGTTCAGCGCTCTGCTCTGAGATTCATGTCTTCATCCTCCGCCCTCAGGACACGTCACCCGGCTGGACATGGAGGAGAAGCTGAAGGCGTTCACTGGTGACATCATGCAGGTTCCCCCTCTGTAAGTGAAGCCTCCGCTCTGATGATGTCGTCACGGTGCCGTGTGCTACCTTCTCATAtCACAGCACCATCAGCCTGATATGTGCTCATGTATGACATGTCgACATACATGTGTGTGTGTGTGTgCTCTCGGTGCTTTCTTGGCTGCAGTGATTCACAGGTTTAGAAAAGTAGAACAAACTGttgttaccttcgcattgaaaatgccggaaggttatgttttgatcgccatttatttatttatatttttatttgtgttgttatttagaaactcaaaagtattgaaccgaatcgcatgaaatttggtgggatgattgtttattatccggggaccagttgattagattttgggatcgatcgggtcaaaggtcaaaggtcatgaacagggaactcaaaagtattgaaccgaatcgcatgaaatttgggatgattgtttattatttattatcccgggaccagttgattagattttgggatcgatcgggtcaaaggtcaaaggtcatgaacaggtcaaaatctttcgcagaactcaaagtattgaaccgaatcgcatgaaatttggtgggatgattgtttattatccggggaccagttgattagatttgggatcgatcgggtcacaggtcaaaggtcatgaacaggtcaaaatctttcgcagaactcaaaagtattgaaccgcatgaaatttggatgattgggatgattattatccggggaccagttgattcgattttgggatcgatcgggtcaaggtcaaagatcatgatcaggccaaaatctttcgcagaactcaaaaagtattgaaacgaaccccatgaaatttggtgggatgattgtttattatccggggagcagttgattgactagattttgggatcgatcgggtcaaggtcaagggtcatgaacaggtcaaaatgttcttgaatcgcatgaaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcaatcgggtcaaaggtcaaggtcaaggttatggaaaggtcaaactcttgttttttagcacatacatttttgtccatggcatgcaactaatgccaaaatgttcataattcaatgcccaatcttgtgatgatatgcgctctaccagtgcccattctagtgctatcgcattgaaaatgccggaagattatgtttgatgttttgtatttatttatttatttatttgtatgttatttataaataaatctaaaaagtatttaacgaatcgcatgaaatttggtgggatgattgtttattatccgggaccagttgattagattttgggatcgatcgggtcatacgtcaaaggtcaaaggtcatgaacaggccaatatctttcgcagaactcaaaagtattgaaccgaatcgaaatttggtgggatgattgtttattatccggggagttgactagattttgggatcgatcgggtcaaaggtcaaggtcaaaggtcatgaacaggtcaaaatgttcttgaatcacatgaaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcgatcgggtcaaaggtcaaaagtcatgaacaggtcaaaatcttctcaaagaactcaaaagtatttaaccgaatcgcatgaaatttggtgggatgattgtttattatccggggaccagttgattagattttgggatcgatcgggtcaaaggtcatgaacaggtcaaaatcttcgcagaactcaaaagtattgaaccgaatcgcatgaaatttggtgggatgattgtttattatccggggaccagttgactagatttgggatcgatcgggacaaaggtcaaggacaaaggtcatgaacaggtcaaaattttcttgaatcacatgaaatttggtgggatgattggttattatccggggaccatttgattagattttgggatcaatcgggtcaaaggtcaaggtcatggaaaggtcaaactcttttttttaccatagcatgatacattttgtccaattggcatgcaactaatgccaaaatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcactctaccgagtgcccattctagttTTGACTGTTTTTATTCCGTCATTGAATGAAGACTCTAACCAGCTGCAgGTTTTGTTTCCACGCCCGGTACGTGGTGACCCACCGGAGGACAATCGAGTGGGACTGAACTCTGAGCTCTCTCTTCCTAGTCGCTGCTGAAGATATTCAAGTAGAAAgTACTCCACACCTCAGTATTGTTTTTAACGGGAGTCATTCTGGTAACGGTGACCCTTATTGGTGTTTCCAACAGCGTCCATGTGTCTCCCTATAGCACACGTACTGGAAGCGTTAGCATCGCAAGACAGCGAAGCCCTCCAGCCACTTCCTCTCAGGCAACGTGAGCTTCCTGACGCAACAATTAAACATCCGCTTATTCTTTTACAGGTTCACGTCACTAATTATGAAACACTCAACACCATGTTCAGTGCTAAATTGGGTGTAGCCAGAAGGGTTTAAACCTGCAGGAAATGATTATCTGGCGTAACTTGAGTATTGAAAGTGAGGAGGAAATATGTGTCAACATTAGATACaaagtcatccatcattccgattttgtgtatatatatataaatatgtatatatatatatacaaaatccattttttgatataaatatatatttagaaatgaatatatatttatatataaattagtgctgtgaaaaataacgcgttaattcaattacaggtttaactagttgttttttttaaacgcatttttaacataaaaaagcttgcaatccgtctgtgttgttggtgtgtcggaaaaaaaaagtcacttgcaaaatgagcttccaatacaccacttcaatctgaactatgtcgcgttcgcctcatgcagacggtcgtgccgctcatcggtaatgatccttccgcaggttcacccacggaaaccttgttacgacttttacttcctgtagatcagggtctcaacacgtcgaccgcgacctgccagtcgattgcggcgtagtgtgggtagatcgcatgacattaaaaagatcggcccgcccctgacatgttctctatagcatgtctttgttctttattaaactaaacgtctgttgttgatcgtatctccacagcagcatgtcatttctgtctcttaacgtgcgtttaacattatcgatatcctctctcgctcgcgccacagactctccaagccgccgcgggaccccaaaaaaaaagtcacttgtcaatctgtccacctgtccgtgtccgggccggtgaggtttcagctgttagcagtccccggtgtccccgccgttcctttcatcacggcccagttcatgaagaaaacccacacagtcagtttgcctcagcagctgctaaaggaagactagaggcctttagattgtatcatggtggagttaatggttgacaaacaagagaaaatgttctgtttaaccctcctgttacctttacatttactaacatattttacctcagcgggtcaatttgaccccagcaattaaaacctccagaaaattattagaattaatattgcttcccaagtttaagtgtgaggtactttatgtttgtttgttgactacctaaatagccctttaaataaataaaaaagttgatatttcttatatgtttgacacagtgaaaaacagcctggggtaaaattgaccccaaagaacaccgacattaaacattgaatggggtcaaattgacccgaaaggtaacaggagggttaaacattctgtttaggatgaagatgtattaatgttccatatggaagaaaactgctaaataactgctgagttgcagcaccattgtatagaagaatgtataaatgtatatattcgtcttttgtcataaatctctatgttctcacaaaatatatcgagagtatcggtaatatgtgattaatcatgattaatccacaaaaacctgtgattaacccgattagaaattttaatcgtttcacagccctaatataaataaatatatatttatatttagtatataaatgtatatatatatatatatatatgactcagaaataagaataattgtatgaagttctttattttttgtaatgcaattaatgcaacaaaaaaacaaatcatacattctggatattatacacatcaactgaaatattgcaagcctttttctttttaatattgctgattatggcttacagctttagtatatcagaatattatattattgtgatgaagttctaagtttttgtaatgcaattaaataaacaaaaatgtcaacgcatctggattcattcattacatctgaacaatagaaaaagtttttattctttaattattgctgattatgcttacagccaagaaaactcaaatatcctatatctaaatattagaatatcatgaaaaagtatactagtagggtattaaacaaatcacttgaattgtctaattaactcgaaacacctgcaagggtttcctgagccttgacaaacactcagctgttataaatctttttttttacttggtctgaggaaatattagataggattttgagtttttttttttttcaagccataatcagcaatattaaaagaataaaaaaaatgcaatatattttcagttattttgtaaaaaatccagatgcatgacattttttttttttttaattattacagaaaaaaaaagaacttatcacaatattctaattttctgagacagtcctgtatatatatttaatcagcaatattaaaagaaaaaagggcttgcaatatttcagttgatttgtaatgagaagatttagaatgaatttttgttttttaattgcattacagaaaataaagaactttatcacaatattctaattttctgagacagtcctgtatatataACCCTGTGGACCCCCACTAGATGGCGCTCTAAGGCCCAGTGCTTGAGAGCAGCTGCTTCAGACCTGCATGGCTCAACTGCCACTTCCCTTGTGAAGATGCTCTCCTGCCTCTGGCTAACAGCCTGAAGTTAAACGCTCCTGCGTCTCAGCGTCTCTGGGTTTGAGACGTTCTGTCCCCACGAGAGAAGCCGGCCATCTTCAGCCGCGGTGTGATTTATTGCCTCTGTGTCATTTCAGCTACTCTGCGCTAAAGAAGGACGGCCAGCGCCTGTCCGTCATGTTGATGAAAGGTCACAAGGTCGAGGCCAAACCCGCCAGACCAGTCACTGTGTACAACCTGACCCTGCAGGAGTTCACGCCTCCTCTCTTCACCTTGGGTGAGCGCGCACTGCACATCCACGTCGCTGCTTGTTTGAAACTGTGCGTCACTTCCTGCTGTTTCTATTTCACAGGATAAATGGGTTtttatttgtttgttttttgtttCTATAACAGACGTCGAGTGTGGCGGCGGGTTTTACATCCGGAGCTTGGTGGATGACCTGGGAAAAGGTGAGGAGACTTTTACGTTCATTTCCTCGCAGAGACGGAGCGGTTAATGCCCCTCCCCCTCCCAAAAGAGTAATGcagggttcgtacggtcatggaaaacctggaaaagtgatggcatttttttaatggttatttccaggcctggaacagtcattcataaaaataaaatccccaaagttttggaaaagtcatgtaaatttgttgttttcatatgttaatttactgtatgctttggaatcctaattgttagtttaaatactaatatttcaacaaaaaaatcccaagatttcccaaagtgttaggtcatggaaaagtcctgtaaatctattggtcagcatgagcgtgaaccaggtaacgtgttcaccTGTGTGCCGCAGCGCTGTCGTCCTGCGCCCACGTGAAGGAGCTGAGCCGCACCAAGCAGGGCCAGTTCACCCTGGAGGAGCACACCCTGCACGAGGAGCAGTGGACCCTGGAGCACGTGCTGCGCTCCCTGCAGCCCTGCCCgGAGCaggggggcccagcggaggggggcccagcggagggggaaccagcggagggggaaccagcggacgggggcccagcagagggggccccagtgcagaggggcccagcggaggggCCTCCTGACGGGACCAAGGAGATGGCCGGGAACATCCACAACACCGCGGCTCCGATAGTCAGTTCTGTGTCTAAACTACAGTCGTTAAATGGATTGTTTGCGATATATAAAAAAAAAGGACCGACATCTGCAGACGTGTTAAATACACTGAAGGAAGTGTTGCTCAAGGAAGCTGGTGTGAAAAACCCCAACCCGCGAAAGAGGAAGAAGCAGAGCCTGAAGATGGGGCACGGAGGGACGCTGGACAGTTCTGCCAGTGGGGTGCTGGTGGTTGGTGTTGGGAATGGCACAAAGATGCTCAGCACCATGTTGGCTGGTTCCAAGAAATACGTGGCCGTGGGGGAACTGGGGAAAGCAACAGACACCCTGGACGCCAGCGGCAAAGTGGTCCTGGAGGAAGACTTCGGACACGTCACCCGGCTGGACATGGAGGAGAAGCTGAAGGCGTTCACTGGTGACATCATGCAGGTTCCCCCTCTCTACTCTGCGCTAAAGAAGGACGGCCAGCGCCTGTCCGTCATGTTGATGAAAGGTCACAAGGTCGAGGCCAAACCCGCCAGACCAGTCACTGTGTACAACCTGACCCTGCAGGAGTTCACGCCTCCTCTCTTCACCTTGGACGTCGAGTGTGGCGGCGGGTTTTACATCCGGAGCTTGGTGGATGACCTGGGAAAAGCGCTGTCGTCCTGCGCCCACGTGAAGGAGCTGAGCCGCACCAAGCAGGGCCAGTTCACCCTGGAGGAGCACACCCTGCACGAGGAGCAGTGGACCCTGGAGCACGTGCTGCGCTCCCTGCAGCCCTGCCCgGAGCaggggggcccagcggaggggggcccagcggagggggaaccagcggagggggaaccagcggacgggggcccagcagagggggccccagtgcagaggggcccagcggaggggCCTCCTGACGGGACCAAGGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01509	TruB_N	TruB family pseudouridylate synthase (N terminal domain)	Family	Interproscan
PF16198	TruB_C_2	tRNA pseudouridylate synthase B C-terminal domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002501	Domain	Pseudouridine synthase II, N-terminal	Interproscan
IPR014780	Family	tRNA pseudouridine synthase II, TruB	Interproscan
IPR020103	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR032819	Domain	tRNA pseudouridylate synthase B, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13767	TRNA-PSEUDOURIDINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001522	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0006400	Biological Process	tRNA modification	Interproscan
GO:0009451	Biological Process	RNA modification	Interproscan
GO:0009982	Molecular Function	pseudouridine synthase activity	Interproscan
GO:1990481	Biological Process	mRNA pseudouridine synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-