Gene detail

Detailed information of HS11910 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11910	EME1 PROTEIN	chr13	12348615	12350940	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11910

CCCGTGTTTGACTTCCTCCAGGCGGGTCGACGGCGAGCTTCCCAGAGCCgTGTTGAGGCGTCCGCAGCAAAGGGCGACGCGGCCGCCGGCGGCACGGGGGCGGCGGATGTGCTGATGATCAGCAGCGATTCTGATGACTGCGCACCTTACGTCCCTCTGGCACAGAGGCTGGAGCAGAGACGACGTAAAGCGATTAGCCcctcctcctcttcctcttcctcctcctacgccgccgccGGTAATGGGGAAGACGGCGAGCGCTGTCCGCCATCTAATCTCCCCCGCCCGAACGGGCCgtCGGGTTCAGACTGGCTGCTCGGCCTCCGTCAGGCGAGGACGGCGAGCCGCGGTGCCTCTCCTGTCAGGAGGAAACCCGCCGGGCGAGGACAGCAGAAAGACAAAGAGGAACGAGAGAGGCAGAAGGCCGAGAGGAAGGCTCTGGCCGAGGCCGCCAAGGCCTTGAGGCCCGAGGAGTGCATCAAGCGCATGGTGGTGGCCGTGGACCCGGGTCTGTAGATCACGATCATACCGCGATCAGAAGCCTATTGCTGGGAAAGGGTTtTTCAAGCttctttttcttcttcttgttgttgttgttgGCATCTGCAGCTCTCCTACAGCTGGAAGGAGGCGGCGTGCTGCTGtCCTCGGTTCAGGCTCTGGGCTGCAGCTGCGCCGTCGAGAAACAAtCCGTACCACGCAGCGTCAGCTGGATGAGGAGAGCGGCCGGCGCCCAGGTGATCACACTTtgtgtgtgtgtgtgtgtgtgtgtgtCttcatcatcctacacaattcagttcattttgtatagcccaatatcacaaattacaaactcccctcagagggctttacaatctgtccacatacgacatccctgacctttgacctcacatcggatcaagaaacactcccaaaaaataggaagaaagaccctttgaggaagaaaAGTAtGTGTGTGTGTGTGTtgcacctcctatagaaacagcacaatcatggctagaactaaagataactcaaatctgttttgcagtgtaacacagtggcaatgccgtaaatcctaaaagaacaatttgatgaaacacgtttttttaaaagtgtgTGTGTGTGAAGTGTTTACCAGCGAGTCGTTTCCCTCTGCaTGTGTCCAGCCAggcggtggcggcggcggcgTGCCCGAGGCCCACGTGGTGATGCAGGTGACGGTGGACGACTTCGTCACTCTGGTCCAGGGATACGTTCAGGTACAAAAATAAACGACCGGTGGTAGGAACAtAGACGTGAGGATGGAGGTGAGGTGAAAGAGGAGCGGGATCGGGATCTCCTAAGGAAcGCCGCCGAAAAACAGGGTCACAGAGTCATTATGTTAATGAGGGAAAATAATACGAGTGTACAGCCCTGGTCCTGTGGGTGTGTCTAATGCAGGAAGAGGGGCGTGTCCCGTGTGgCTCCGGTCCCTCTCTGACGTCCTGGGTGCAGGAGCATCAGCGGCGGCACCCCGGCAAGGTGCTCAGCCTGGCGGTCATCGACCTGGAGAGCTACTTCAGGTGGGGAAGGAGCGGCCGAACGGCGACGCCCCCGTCACCGAGAGGCGAGAGGgAGCGGCCATGTTCATGTTTaTAAGTCTGCAGGTCCCAGAAGTCCCAGAGCCAGAAGCGCTTCAGAGAGGCgGTCGCTGGcgaggagctggggggggaagggaaagcgaagaggaggaggaagaacggcggagaggaggcgcgacccgaggtgtcgcaggtggaggtggaggaggtaggTCAATTaTTCACAGTGAAGCAGAGCCAATTAgATACATTTGATTGATTATCACTGATGATGTGTTTTCTGAAACGATAGAAAATATTATATTTCataaaaTAAAATATTTGATCTGATCaTCCACATGGTTTGAGGGCTTAATAAAGGcTAAAAAAAATTTAAAAAAAGAATACCAACCTTTATTTAATCTTCTTctttttttttggacaaacgTTTTTATTGTTTTTTGACgTGAAAcCTGGAAAATATCTGAATACATGGGGGGGAAGAAAGAAAATATgTATTTTTAAAGTGCCGCtaCGTCCCTTTAAACTCCGTCAGGCGGTGGTGCATCTCCAGCTCCACACCGGCGTCTCCGTCCGCTTCCTGTTGACCTGGAAGGACTTCTCGGCTCACATCGCCATGACGACCAAAGCGGTGGCGGAGGCGCCTTTCAAGTGAGCaGCCTCCCGAGTTGAACTCCTTGACTCCTCCCtTCCTCTTCTcCCCCCCCCCCCCCAGATAAAACGATCGTTCCCTCCGTGTGCTCCGCAGGCGAGAGAGGGAGCAGCCCGTGTTTGACTTCCTCCAGGCGGGTCGACGGCGAGCTTCCCAGAGCCgTGTTGAGGCGTCCGCAGCAAAGGGCGACGCGGCCGCCGGCGGCACGGGGGCGGCGGATGTGCTGATGATCAGCAGCGATTCTGATGACTGCGCACCTTACGTCCCTCTGGCACAGAGGCTGGAGCAGAGACGACGTAAAGCGATTAGCCcctcctcctcttcctcttcctcctcctacgccgccgccGGTAATGGGGAAGACGGCGAGCGCTGTCCGCCATCTAATCTCCCCCGCCCGAACGGGCCgtCGGGTTCAGACTGGCTGCTCGGCCTCCGTCAGGCGAGGACGGCGAGCCGCGGTGCCTCTCCTGTCAGGAGGAAACCCGCCGGGCGAGGACAGCAGAAAGACAAAGAGGAACGAGAGAGGCAGAAGGCCGAGAGGAAGGCTCTGGCCGAGGCCGCCAAGGCCTTGAGGCCCGAGGAGTGCATCAAGCGCATGGTGGTGGCCGTGGACCCGGCTCTCCTACAGCTGGAAGGAGGCGGCGTGCTGCTGtCCTCGGTTCAGGCTCTGGGCTGCAGCTGCGCCGTCGAGAAACAAtCCGTACCACGCAGCGTCAGCTGGATGAGGAGAGCGGCCGGCGCCCAGCCAggcggtggcggcggcggcgTGCCCGAGGCCCACGTGGTGATGCAGGTGACGGTGGACGACTTCGTCACTCTGGTCCAGGGATACGTTCAGGAAGAGGGGCGTGTCCCGTGTGgCTCCGGTCCCTCTCTGACGTCCTGGGTGCAGGAGCATCAGCGGCGGCACCCCGGCAAGGTGCTCAGCCTGGCGGTCATCGACCTGGAGAGCTACTTCAGGTCCCAGAAGTCCCAGAGCCAGAAGCGCTTCAGAGAGGCgGTCGCTGGcgaggagctggggggggaagggaaagcgaagaggaggaggaagaacggcggagaggaggcgcgacccgaggtgtcgcaggtggaggtggaggagGCGGTGGTGCATCTCCAGCTCCACACCGGCGTCTCCGTCCGCTTCCTGTTGACCTGGAAGGACTTCTCGGCTCACATCGCCATGACGACCAAAGCGGTGGCGGAGGCGCCTTTCAAGCGAGAGAGGGAGCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732	ERCC4	ERCC4 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006166	Domain	ERCC4 domain	Interproscan
IPR033310	Family	Mms4/EME1/EME2	Interproscan
IPR043086	Homologous_superfamily	EME1, nuclease domain, subdomain 1	Interproscan
IPR043087	Homologous_superfamily	EME1, nuclease domain, subdomain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21077	EME1 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0008821	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031297	Biological Process	replication fork processing	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048476	Cellular Component	Holliday junction resolvase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-