Gene detail

Detailed information of HS11706 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11706	CYSTEINE-RICH PDZ-BINDING PROTEIN	chr13	7177866	7180039	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11706

ATGGTTTGTGACAAGTGTACGTATCGCACTTTTAATATGCTGTCTATCTTTTAATCGAAcTTATTGTTGTGCTTTTAGCGAAGTCTTGAGATCTTTCGAAaGCTAACTTGCTAGCTAACTGtTGTCATTGCTGTCCTCCTTGTTGTTTTGGTCTATGAGCACCGACCCTGCACGTGAGACATGCTATCTTCTCTTCAAACTGTGTGTCGCTCGTTATTTCAGGTGAGACGAAGCTTGGTAAAGTCATCACACCTGACACGTGGAAGGATGGGGCACGGAATACAACAGGTAAACAGAGCACACGGATTCTGTGTGTTTGTCTGTTACTATGGCCTCTTCACTCTCTGATGTGATCAGCTTTAGGCTTTAATATACTTATTTATGTATGCAGGTGCACAATATATTTTTTTGTTACTCATTAAGCTCTCAAAAATATACTTAAACACGTTGCACATACAACTGGAGCGACTGTCTTTAATCTGTAAAACGTAattaccttcgcattgaaaatgcggaaggtaatgttttgatcgccgtgtatttatttatttatttgtatgcgtgttattcgcaaaactcaaaaagtattgaaccgaatcgcatgaaatttggtgggatgattggttattatccggggactatttgattagattttgggattgatcgggtcaaaggtcaaggtcatgaaaaaggtcaacatcttcttgaatcgcatgaaatttggtgggatgattggttattatccggggaccatttgattagactttgggatcgatcgggtcaaaggtcaaggtcatgaaaaggtcaaaatcttctttttaccatagcacggtcaattggcatgcaactaatgccaacatgttcataattcaatgcccaatcttgtgatatgcgctctaccgagtgcccgttctagttACAGAAATGGACTGATTATGGTTTGTTTACTTGTTTAGATTTCCATAGGCTTTTCACACCCATTTAAATACATCAACTTTGTGACAGGCTTTGTAAAATGTATGAGAGGCAGTTTTTGGGCTGCCAGTGATGCCATTAATCTGTGTGACATCTTCAAATAGTTTATATTATCCAGCCAGTCCAGGACCCCAGACCCCACGGCTGTTAACATCTGACTTAGATGATGGTGATTAATTGAGTTCCTTCTGCGTTTCTTTCCTTTTCAGAGGGTGGTGGGCGTAAGCTAAATGAAAACAAGCTCCTGACATCTAAGAAAGCCAGGTGAGTAACTCGCTAAAGTCTGACTTCCATCCTTTCTCTGTTTTTAATTCCAGGAAGTCACACAAAAGTATTTTTATTGACTCAATCCAATTGTTACACATTAACATTTATCATAGTCATGTATTCCCTTACCTCTACCACTAGCATTAATACAACACATATTGGTGCCTCTTTAGCTATTTCTTAATTGTGTCTCCCTCAGGTTTGACCCATACAGCAAGACGGGCTTTGCTACCTGCAGGATCTGCAAGAGCTCAGTTCATCAGTCTGGGTCGCATTACTGTCAGGGCTGTGCATACAAGAAAGGTATAAACTCACTCCCACTGGACTTCTTCTGAACAGAAATAACAAAGTTGGAGATTTTTCACAGATTCTATGAGGCAAAAAACATTGTCTGACCAAGGCTAGTGGAGCTTACCTATAGAAACAACTCCACACTATTCTTCACCAAGAATAACTATTTTGAGTCTGAACACATCTGTACCAAACCGATCACTTTGAATGGTTGGGTAACCTAAATTGCACACAAAAAAGAAGCCATGTGTTCTTGTATGTTTCTGTAGAACGTGTTGGGTGTATTTGGCCAGGTTCTGACACTTAGtcatcaagtaaacacaatacagctctaaatgaatgcctaagttgctctgtgtctgctgtatttgCTAACATTTTTGACATTACAATttaataaactaatattatttcaatgttgtatttgcagctagtttccgctaatccccaaAAATCTGTTTGTAGACTTACACAATACAAGCAAGGTTGACAACAAGTGCAGAGCCTGCTACCGATATTGCTTTTTCCTCGAAACTGATATTTGTTTCTTTATTTCTTTCCTCATTTTCTTGTCTCTAGGAATCTGTGCAATGTGTGGAAGGAAAGTTTTGGACATCAAGAACTACAAACAGACATCAGTGATGGTTTGTGACAAGTGTGAGACGAAGCTTGGTAAAGTCATCACACCTGACACGTGGAAGGATGGGGCACGGAATACAACAGAGGGTGGTGGGCGTAAGCTAAATGAAAACAAGCTCCTGACATCTAAGAAAGCCAGGTTTGACCCATACAGCAAGACGGGCTTTGCTACCTGCAGGATCTGCAAGAGCTCAGTTCATCAGTCTGGGTCGCATTACTGTCAGGGCTGTGCATACAAGAAAGGAATCTGTGCAATGTGTGGAAGGAAAGTTTTGGACATCAAGAACTACAAACAGACATCAGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10235	Cript	Microtubule-associated protein CRIPT	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019367	Family	PDZ-binding protein, CRIPT	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11805	CYSTEINE-RICH PDZ-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030165	Molecular Function	PDZ domain binding	Interproscan
GO:0030425	Cellular Component	dendrite	Interproscan
GO:0031122	Biological Process	cytoplasmic microtubule organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-