Gene detail

Detailed information of HS11636 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11636	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	chr13	5456116	5458769	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11636

ATGTGCAGCAGCGGCCCCGCAGCCGCCAACAAGAACCCCACGGTTTATTTTGACATTGCTGCCGACAACCAGCCCCTCGGGAGGGTAACCTTCGAGGTGAGACGACACGATGTAACGCGTGATGTAACGATTGAGAAAACAACACCTGCTAAACACCGACGGTGCGTCTGAAAGTGTATCATTGAACAAACTGTGTTTCGTTCTTTTGCAGCTCAACGCCGAAGTTGTGCCAAAGACTGCAGGTGAGTGCTTGTTCTTcCAATAAACCCGAGTGGCAAATCGGGTTTGACCGCTTTAGTCGGATAAACTGAAGGATTTAAAGTCTTTTATTTtTTTTTATTTTGTTGGGAGtGAAAATGCTCCTTCTtAAAGCTAAACAAGATATTTATAAACTCACTTGGAAAATGCATCCTATTAAAAACCACAAACATGGCTGCAACCGTCACCAAGTTCAGCAGTAAAATGCAACGTgAAGCATTAATGCAGCACTaATATTGCTCCAATAACATCATATATAATAATACaGACCGGGaTCAcAGTTaTGCATTTTtAATGCTTTTACTTTAACACGTAAACTACATTAGCTGATAATACTTTTACTTCAGTAAaGTTTTtAAaTGTGGCACTTTGAAGGTCACCAGATAGTCAATACGGGTATTTTGGTCAAAAAGAAATGGTGGAATTTCGAAGCCcaggccTGAAAATAAATAAACAAACACTTCAAGAAATGAGTGAGTTGAAGTCGTTCACACATTCAAATATGATGATttgttgttgttgttgtttGTATCCCCTGATGTGTTGTGGCACACTGAGCTGTGTGGACTGTCAGGCGGGgATCTGACTCCTGTCTGTGTTGCAGAGAACTTCCGAGCGCTGTGCACAGGGGAGCCAGGCTTCGGCTACAAGGGATCCACTTTCCACAGGGTGATCCCTGACTTCATGTGCCAGGTAGGCTCGTCTCCCTTTTCCTTTATTGTGCCCATTGTTGTCGAGCATTGCAGCTGTTGCAGTGCAGTGATGTTATTTGTTTTCAGGCTGGAGACTTCACtAACCACAATGGAACTGGCGGCAAATCTATCTATGGATTGAAGTTTTCTGATGAGAACTTCAAGCTGAAGCACACCGGACCTGGTAATCATTTGTTTTGTACACTACAGGGAACATCATTCACTTTGTTTTCTTTCTTTCATtTATTTGTTCTGCAGCCTTCACAACTCCAACCTCATTATTTCCTTTTGATGCGACAAACaGgGCTGCACAGACTTTAGTtTAAAGACGGTCGACTTACTCTCTCCAGACCATAATACGGTCTGACTGCACAGTGGGATACAATGCAAATGCtTTAAAtGTCCCACTTAAGAAGCTGCAATATTTATCACGGATGGATAAGCTGTTGATTTTCAGGAAGTCTTTTTTCCAGTAAAGTATTGGAAACCGACGGATAAATATAATAGTACTATAATGAGCCACAATTAAACAAATACCAGGAACAGATgCAATATTTAACATGACTTAAATGTTTAAAATAATCTAAAAGAGTGCCTGAATATGCAAGAGGGCATCTCAAAATATGAATTAATGTATATAAGCACGATGCCTAGTGTTCCTCATGACACATGGTGTGTCTTACTCATTTTCGCCAGCAGGTGGCAGCATtATACgGATAATGTTTAAGTTATCTGtTTCTGAAACTGAAGCCACTAAGTGGAATTCAGCCAACCTTCCTTGTCTTATTtAtCTCTGTTCCTTTCCTTTCGTGACCAGAATATTTAAATGTCCATATGTGTGTTTGTGATCCATGACTCTTATTTTGTTGAGTTTCTCAAATTGATTAACTGCAtTCTCTCATCACTCAAGTTTaTTTGCAGCTCAGCTGAAAGGCAGTTTTCGTTTgTCTCTCAAAGTAATAACTTTGTCATCGCTGCATTACAGGAATCTTGTCTATGGCCAACGCTGGACCCAACACCAACGGATCCCAATTCTTCATCTGCACCAGTAAAACAGAATGGTATGTGCtGTCATACACCACAGTGGGTAGTGCAGTTGTTTTATTACAATTCACcGTTTTTTtGTCCTATTTCTCTCATtGCTATTACAATCGGTACATTATTCTTTTTTTTttACACATTGTGAGTTCCACACTAACTTTTACCCCaTACCTGCACATAATGTAGATcCCACCCAGTTGGAAAACTTTGGTAAAGAACCCAATCTTAAAATTCATCCAACCTTTTTAAGAGGCTTTTGTTAACGCAGCTTTTTAAAAATATGTTTCATTATTGTCCAGTTGTTGTTcAAATGCTATTTCAGTTTTgTTTTTTTCAACCCTTCTTGCTGTgAATTCTTCTAATACTTTGACACAACAGCAACAAATAAAAAGGATTTCAATGACGACCCAGAAGAGCATTGCAGGAATAGTGGCGTCGAGAGCCAAGAGTCCCGCCCAGCTGGGTGCATGATGGGTCGTCTCTCAGTCCGGGGCCGTGATAATAAACTTCTTGCTGTCTTCTTTTAGGCTGGATGGCAAGCATGTTGTCTTTGGCAGCGTGAAGAAGGGAATGGACGTGATCAAGAAAGTGGAGGCTTTCGGTTCTCGGTCTGGGCGAAGCTCCAAGAGGATCACGATCGCGGACTGCGGAGAGCTGGACTAGATGTGCAGCAGCGGCCCCGCAGCCGCCAACAAGAACCCCACGGTTTATTTTGACATTGCTGCCGACAACCAGCCCCTCGGGAGGGTAACCTTCGAGCTCAACGCCGAAGTTGTGCCAAAGACTGCAGAGAACTTCCGAGCGCTGTGCACAGGGGAGCCAGGCTTCGGCTACAAGGGATCCACTTTCCACAGGGTGATCCCTGACTTCATGTGCCAGGCTGGAGACTTCACtAACCACAATGGAACTGGCGGCAAATCTATCTATGGATTGAAGTTTTCTGATGAGAACTTCAAGCTGAAGCACACCGGACCTGGAATCTTGTCTATGGCCAACGCTGGACCCAACACCAACGGATCCCAATTCTTCATCTGCACCAGTAAAACAGAATGGCTGGATGGCAAGCATGTTGTCTTTGGCAGCGTGAAGAAGGGAATGGACGTGATCAAGAAAGTGGAGGCTTTCGGTTCTCGGTCTGGGCGAAGCTCCAAGAGGATCACGATCGCGGACTGCGGAGAGCTGGACTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00160	Pro_isomerase	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002130	Domain	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain	Interproscan
IPR020892	Conserved_site	Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site	Interproscan
IPR024936	Family	Cyclophilin-type peptidyl-prolyl cis-trans isomerase	Interproscan
IPR029000	Homologous_superfamily	Cyclophilin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11071	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000413	Biological Process	protein peptidyl-prolyl isomerization	Interproscan
GO:0003755	Molecular Function	peptidyl-prolyl cis-trans isomerase activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0043231	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0070301	Biological Process	cellular response to hydrogen peroxide	Interproscan
GO:1902445	Biological Process	regulation of mitochondrial membrane permeability involved in programmed necrotic cell death	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-