Gene detail

Detailed information of HS11563 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11563	RETINOL-BINDING PROTEIN 4	chr13	3368958	3374154	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11563

ATGCGGATGCCGGCTTTGATGAGGCCGAACTCgGAGACGGGGAAGTCGCTGAAGGAGAACAGGTACAGGTTCTCTCCaTCGACGTTGTCAGCCGGTGGGCAGGTTGCTCTCTGAAAGAAATACCaATGAATCATTCaAAATAAACCAGTCAAGAATTTAAAAAtATTTCACATTTTCCAATGAAATTGATTTGAAATAAATCAAGCTTTCCAAAATCCATTCCcAAGATCCTCCTGAGTCATTTCATTTGATCGCCAACCTCCGCTTTCATttcatttattaccttcgcattgaaaatgcggaaggttatgttttgatcgccgtgtatttatttatttatttgtatgcgtgttactcgcataactcaaaaagtattaaaccgaatcgcatggaatttggtgggatgattggttattatccggggaccatttgaatagattttgggatcgatcgggtcaaaggtcaaggtcatgaaaaggtcaacatcttcttattaccacagcacggtcaatttgtatccaattggcatgcaactaatgccaacatgttcataattcaatgcccaatcttgtgatatgcgaaggtatgcgctctaccgagtgcccattctagttGTATCTGTATTTTTCCTGATTGTGTTAATTGTTAACAAATGTATaTAGTAGAATAAAGATATTTTTATTTCAACAATGTCAgAATCCATCTTGCATAAGCCTTGCTTTAGATAcCGCAGGAAAATaTCCTAAAATTAACCCTATTTACAATTCTTTATGTTATTCATaACTCAAACTAATTTATTTAAAAAAAGAAGTGTAATGCTTAAAGTGATGCAATTAACTGTCATCAAGTTATTCCAGTTTATAAACTACACTCAAACAATCTATTTAAATTGCTAAATCATATTTTGGTGAGTGGATAAACAAACTGTTTcCCCAATATTCTGCTAACAACACATTATTGACTTTTAAAaCTCCAAAGCAGTGCATTTAACAATGAGGTTGTTTACCCAATCCCACTTAAAACATAAATGTCAAACACAACAAtAAaCCATCTCttGCTCTCGTCaTGACATTACATTCACCTCTATACCGCCCAACACTATAcGATGCATACACAAGCGTCTGGAGTTTCTCAGCCAATCTTCATGATAATGAAATGTTGCCTCTGGCCAAATTCCAGCTGCTATTATTCCTACTGAAAGTGAGTGATTGTCCTGTTTTCCACTGGCTGGGGCTCTGGTTATGCAAACTGCAGATGTGTGGCTGTGCTCTTTTTATTCAAAGCTCAGAGGACTGCTTACACGAGCTCGGTGCAAAATAACAGCATCAATTTATAAAAGCCCGCCACAGTAGATAGAAGTCATTTGAAATACCGACCTGTGTTAGAGAGTATAGTTACTGCATTCCTCTTTGTGTTTGTTCCTTGAATGATACAAACCAGGAATAGCAGAACAAAACAAGTCACAACGAAGCTGTTTGACCTTGGTTTTTATGAAAACAATGTTTCaaactagaacgggcactcggtagagcgcatacctttcgcatatcacaagattgggcattgaatgatgaacatgttggcattagttgcatgccaattggataaaaattgatcgcgctatggtaaaaagaagattttgaccttttcatgaccttgacctttgacccgattgatcccaaaatctaatcaaatggtccccggataataaccaatcatcccaccaaatgtcatgcgattcaagaagatgtagaccttttcatgaccttgacctttgacccgatcgatcccacaatctaatcaaatggtccctggataataaccaatcatcccaccaaatttcatgcgattcggtttcatactttttgtgttatgcgagtaacacgcatacaaataaataaataaataaataaatacacggcgatcaaaacataaccttccgcattttcaatgcgaaggtaataaaGAGGTTCTTGTACACATGAGATgACATCCTCGTGGGGGCTGTTGCCGTTCTCTTGGACTCGTCTTTTGAAGGGACTCGTGCAGAAGTACACACAAACATGTCCATTCACAAGCATCTGTatagATATAAGTCCTCCTATCCCCACGTCTGTGATGGTGTTTAAAACCCCAGACTTTGTGCTTTGACGTGATGTGATTATCTCTCTTTCACATTGATTATTCTTTTTTGTTTTAAGTGCACTCTGTCCACCATTTATACAAACAATCCCTAAAAGGGTCAGGCGAGAGCAAAATCAAGTCAACGGGTTGATGCAATCACACGGATGCTGCCGGGAGGCCCGCGCACCCACGGGAACACGTtACTGGTATCACGGGAAAGCCCTGAAACAGGCCTTCAGTGGGATCgacacaaagggacacacacacactcacacacacacactcacatttaacttagatttctgaggAGTGTTATGCCTTATGTGTGTATACCTTGGGGTGCGACCGATGTGTGTCTGTATCTGCGCATGTAGCTCGTTCCAGATGGTCCTCTTTTGGCTTTGTGCTCACAAAGACCAAGAAAAGCCTCTgaagaagaagaagaagaagaagaagaagaagaagaaTAATAATAATAATTCTTAGGGGTACCCCGTACCCCTAAGAAGAAGAattattattattattattattattatAATAATGGGGGGCAGTGTACAGAACACACAAATtAATAATAGCACCAGGGCCTGCAGTTATGTAAATGTGTGTCCAATGGAAGGCAAGTTAGCTGTGGGGAGAGCAATGGGGGGGGGGGGTCAGATCTGCAGAAGTTGCGCAACACTGGCCAGCTGTATATAAGGACAcgGCGGTGACAGGAGcctGCACGATCCTCGTGAGTCCTCCACtTTTAAACAGGTATGCATTGACTATGGACTTCTgGGGGTTTTTTTGTATAAttTTTTTTTTACTTTGACGTTTTGATCGGAAAATCTCAAATGAAGGATCGGTGCTCTCGCAAACGTTTGTTTTTGCCTCACACTATTTACtATTTCTTTGACGCAATCTTTAAGTCCTTTgAATTCAAAGTGTTTTAATTGAagaggaagaaaaatAGCTTGTTAGGAGTTCTGCTCCACTCCACTTCGCTGAAAGACCTGAATGAACTAATGCCCGTGTCCTCTCTGTGGCCGCTCCCTTCCtCTCCTCCGAGGTAGAATGCTGCGCTCCGCTGtggccctcgggctcctggccctctgtctcctggccGTGTCCTCGGCACAGGACTGCCAGGTGGCCAACATCCAGGTCATGCAGAACTTTGACCGGACAAAGGTGAGTCGTGCCACGAGATCCATCTAATTCTAGCTCATTCATCACATTTATACACGCTTTGCAGTAATTTTTTGTGTGGaATTAGCGACAGATGGAAATATAACTcCTGTTGGAAGcGTTCTGTGTGATACTcATTCCACTGTTTATGAATATTTAGCTTTTTCACTTTGATGGAAAGCGCTCGCATTTGGATTTCTCCCTCGTAGTATGTCGGGACATGGTACGCCGTCGGGAAGAAGGACCCGGAAGGTTTATTCTTGCTCGACAACATCGTGGCCACCTTTGACATCAACGCCGAAGACGGCAAAATGACGGCCACGGCCGAGGGCCGAGTTATCATCCTCAAGTGAGTTCACGTCCGTCACCGCGAAGGCTCCTCCGTCCGGCCTCTATTCTTTACCGTCTCATCGCTGGTGATTTCCTTTCTCCCGTTTTGACCTCTAGCCAGTGGGAGATGTGTGCCAGCATGTTTGCCACCTTTGAGGACACCACTGACCCTGCAAAGTTCAAGATGAGGTACTGGGGAGCTGCGGCCTACCTGCAGACTGGAAGTAAGTTGAGGAACTGGAATTTCTGACGTGGATTTCTGGAATCAACAACAATAAATTCAAGGCTAATATGAGGTTTTGGGATTATCGGCGCAGAGGCGCTGATATTAAATCGCAAAAGGGATTGTTGACCTCCAGACCACGATTGATTTCATGTAATCATCTACTGCAGCACTTCTCTGTGATCCCGGAGCATGAATCACACCAAACACTGACTTTAAAGGACTCAACGTGTAATTGCGTGTAACTCCGATGTCACATTCATGCACGCAATCTCTAAAATATCATCAGGATCCCAGCACTGACAACACTGTTGTGTTTTTAAGTACACTTTCAGTATCAATTGTCGTATTTCTCACAATACCCATGGATTGATACGCATCAGCTGTGTACTTGATTATTCTGTCATGGGACTCTTTTATAAGTCCCACCCtGTTTTTGTATAAATGATTGACAAAAGTTCTTAAGTCCACTTTAAGCAGAAAACAATCAATGTAAAAGAGATAATCACATTTGCTCAAAGCACAAAGTCTGAAGTTTCAAACACCGATCAATGATGTCATAGTGTGAGTAGAGGTGGGTACCTTTATGTGTGTTTACACAAATCAACATTATAGTATATACCTTTAACGTTAAAAAGCTCTTTACCTCAATTTAAAGCAAAATAGTATTTAACTTGTGAACAAAGAAAACGTCATATTCAAAATATCAGAGTACATGTGAGATGTACAGTGAATGTTTATTGTAATCTGTAGGATATTACATTTTTTGGCCTCATTTGTATCACAAAAGTaaaAAAAAAAAGATTTCCAATTTATAAAAGGATGGTTTTGTTAAAATAAAAAAACTCTCTTTCCTTTGCACCCTCCCTCCTCCGCTCACAGACGATAACCATTGGGTGATTGACACCGACTATGAGAACTACGCCGTCCACTACTCCTGCAGACAGATAGACTCTGACGGCACCTGCCTGGACAGCTACTCCTTCATATTCTCCCGTCATCCCGTCGGCCTGAGGGCGGAGGACCAGAGCAAAGTCGTCCAGAAGAAGACGGACCTCTGCCTGCTGGGCAAATACAGACGCGCTCCCCACACGGGTGAGATCACTTTATGATAAAAATGCACATTTTCATTCAATACGTGTTCTCATGTACCAGAGGTGAAGCTTAAATATCATCAATTGTACTACGCACTAAAATACTGTGTTTTCTCTCTCTTTTGTGCCCATGTGAGATCATTACGATTGTGTTTCCATCATGTGGTATTTTGTAGTGAGCTGAACATGTTGTGTCCTTTCCACTGCAGACTTCTGCACGACCAGCCAATCCGTCACTCCGAAAACTGATCAAATGCGGATGCCGGCTTTGATGAGGCCGAACTCgGAGACGGGGAAGTCGCTGAAGGAGAACAGAATGCTGCGCTCCGCTGtggccctcgggctcctggccctctgtctcctggccGTGTCCTCGGCACAGGACTGCCAGGTGGCCAACATCCAGGTCATGCAGAACTTTGACCGGACAAAGTATGTCGGGACATGGTACGCCGTCGGGAAGAAGGACCCGGAAGGTTTATTCTTGCTCGACAACATCGTGGCCACCTTTGACATCAACGCCGAAGACGGCAAAATGACGGCCACGGCCGAGGGCCGAGTTATCATCCTCAACCAGTGGGAGATGTGTGCCAGCATGTTTGCCACCTTTGAGGACACCACTGACCCTGCAAAGTTCAAGATGAGGTACTGGGGAGCTGCGGCCTACCTGCAGACTGGAAACGATAACCATTGGGTGATTGACACCGACTATGAGAACTACGCCGTCCACTACTCCTGCAGACAGATAGACTCTGACGGCACCTGCCTGGACAGCTACTCCTTCATATTCTCCCGTCATCCCGTCGGCCTGAGGGCGGAGGACCAGAGCAAAGTCGTCCAGAAGAAGACGGACCTCTGCCTGCTGGGCAAATACAGACGCGCTCCCCACACGGACTTCTGCACGACCAGCCAATCCGTCACTCCGAAAACTGATCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00061	Lipocalin	Lipocalin / cytosolic fatty-acid binding protein family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000566	Domain	Lipocalin/cytosolic fatty-acid binding domain	Interproscan
IPR002449	Family	Retinol binding protein/Purpurin	Interproscan
IPR012674	Homologous_superfamily	Calycin	Interproscan
IPR022271	Family	Lipocalin, ApoD type	Interproscan
IPR022272	Conserved_site	Lipocalin family conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11873	RETINOL-BINDING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005501	Molecular Function	retinoid binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0019841	Molecular Function	retinol binding	Interproscan
GO:0034632	Molecular Function	retinol transmembrane transporter activity	Interproscan
GO:0034633	Biological Process	retinol transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-