Gene detail

Detailed information of HS11335 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11335	NF-KAPPA-B INHIBITOR ALPHA	chr12	22697999	22700012	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11335

ATGGACGTCCACCGAGCACCGAGCCGCCACCACACGGACTACCGGGCGGACCGCGCGGAGCCCAAGCACGGGACGGCGGCGCCGCCGTGCCACGAGGACCGGGTCGACAGCGGCCTGGACTCCCTGAAGGAGGACGAGCTGGTGTACGAGCTGGAGGAGCTGCACATGGACGCGCGCGAGGAGCGCACGCACGACTACGAGCCGTGGAGGCGCGCGCTGACGGACGACGGGGACTCGTAAGTAGACGTGTTATTGACTCGcGCgtgccttccttccttccttccttccttcctGCGCGGCTCAGGTGCGCATGCACGATAACGTGAATGCGCATTACAGCCGTGAAGAAGCGGCGCAGTTGAGTCTGAAAATGTCGAGAAAAGTTGCACGACAACAAAAGGGCCCTCTGCGCGCGTCCCCGCGGCCAGCGCTTGTGTACTTTGGCTGAGCGCGCGCTGTGGGCGGCGCCGCGCTGCGCGTTCAGGAAAGTCCCTGGCCCGCTGCCAGGAAGAAGCTTCAGAGGCTGAGCGACCGCGACGCTCCGGCCTTGCGAAACACTTTGTGCTCTGATCCACTTCCTCTCCGGAACGAGCCGCGGTTTCTTTTTTTCGAAAAGCACTATtAACTTATCTTACccccctcctctccccccctcctcctcctcttcctcttcctccccccacaggctcctccACTTGGCCATCATCCATGAAGCCACCGATCAGGCCCTGCAGATGATCAAAGTGTCTCACAATCACCCCTACCTCGacacgcagaaccaccagagacaggtaatgacacacacacacacacatgcacacagagagacactcacacacacacagatgcacacagacacagacacacacactcgcacacagacacacacagatgcacacacacacatagacacccacacactcacacacacatagacacgctatcacagacacacttgcactcacaaagagacaaagacacacagcacacagacacacacatacagacacacacacagagacgcacacaaacagacacacatacagacagaggcgcacacactcacacacaaacatagacatacacacacacgcacacagagacacaaacacgcatatacagacacccacacactctctttgggatgataagtaaatgcccccccccccccccccAGACTGCGCTCCACCTGGCGGTGATCACCGAtCAGCCCCAGCTGGTGGAGCGGCTCCTGAAGGCCGGCGCCGACCCGCGTCTGGCCGACGACGGCGGCGaCGCGGCGCTGCACCTCGCCTGCAAGAAGGGCTCGCTGGCCTGCTTCAGCCTCATCACGCAGAACTGCCAGCGCCACGTCGCCGCCATGGCGGCGCGCCCCAACTacagtggtgggtacacacacgcacgcgcgcacacacacacacgcgcacacacacactgagacgttcgtggttattaacttcgctcttcctctctctcCACAGGACACAACTGTCTCCACTTGGCGTCCATCAACGGCTACATCTCATTGGTCGAGAGCCTCGTTCAGCTGGGTGCCGACATCAACGCGCAGGTGAGAGGAAGTGAGGTTTCCACGGCGACCGCGAGGACCTCGGCGTGCCTCGGCAGGAAGCTAACGgTGTCCCTTCTCCCCGCGGTCGTAGGAACAGTGCAGCGGGCGGACGCCGCTCCACCTGGCCGTGGACCTCCAGAACCCGGCGCTGGTGCTCCGCCTCCTGCAGCTCGGCGCCGACGTGAACTGCCTGAACTACGGCGGCTTCGCGCCGTACCACCTGACCTACGGCCGCCAGAGCGAGGAGATCCGCCGGCAGCTGTACGAGAAgacggcgcgggagctgcggcggcttcccgacagcgagtcggacgacagcgacgccgagggcgCGTCGGAGGACGAGGTCGGTTCTCCAGAACCTTTGAGTTCTCTCGAGGTTTCACGCCGGGTCGGTTGTTTCCTAACGTGCGGCGCTCTCTCTcCCGCAGATGTACGATGACAATGGACGTCCACCGAGCACCGAGCCGCCACCACACGGACTACCGGGCGGACCGCGCGGAGCCCAAGCACGGGACGGCGGCGCCGCCGTGCCACGAGGACCGGGTCGACAGCGGCCTGGACTCCCTGAAGGAGGACGAGCTGGTGTACGAGCTGGAGGAGCTGCACATGGACGCGCGCGAGGAGCGCACGCACGACTACGAGCCGTGGAGGCGCGCGCTGACGGACGACGGGGACTCgctcctccACTTGGCCATCATCCATGAAGCCACCGATCAGGCCCTGCAGATGATCAAAGTGTCTCACAATCACCCCTACCTCGacacgcagaaccaccagagacagACTGCGCTCCACCTGGCGGTGATCACCGAtCAGCCCCAGCTGGTGGAGCGGCTCCTGAAGGCCGGCGCCGACCCGCGTCTGGCCGACGACGGCGGCGaCGCGGCGCTGCACCTCGCCTGCAAGAAGGGCTCGCTGGCCTGCTTCAGCCTCATCACGCAGAACTGCCAGCGCCACGTCGCCGCCATGGCGGCGCGCCCCAACTacagtgGACACAACTGTCTCCACTTGGCGTCCATCAACGGCTACATCTCATTGGTCGAGAGCCTCGTTCAGCTGGGTGCCGACATCAACGCGCAGGTGAGAGGAAGTGAGGTTTCCACGGCGACCGCGAGGACCTCGGCGTGCCTCGGCAGGAAGCTAACGgTGTCCCTTCTCCCCGCGGTCGTAGGAACAGTGCAGCGGGCGGACGCCGCTCCACCTGGCCGTGGACCTCCAGAACCCGGCGCTGGTGCTCCGCCTCCTGCAGCTCGGCGCCGACGTGAACTGCCTGAACTACGGCGGCTTCGCGCCGTACCACCTGACCTACGGCCGCCAGAGCGAGGAGATCCGCCGGCAGCTGTACGAGAAgacggcgcgggagctgcggcggcttcccgacagcgagtcggacgacagcgacgccgagggcgCGTCGGAGGACGAGGTCGGTTCTCCAGAACCTTTGAGTTCTCTCGAGGTTTCACGCCGGGTCGGTTGTTTCCTAACGTGCGGCGCTCTCTCTcCCGCAGATGTACGATGACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051070	Family	NF-kappa-B Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007253	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0034142	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356	Biological Process	cellular response to tumor necrosis factor	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-