Gene detail

Detailed information of HS11299 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11299	SYNAPTOSOMAL ASSOCIATED PROTEIN	chr12	20947729	20954198	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11299

ATGTGCCGGCGGTCGTCCGTTCCTCCGGAAGAGGCCGAGAGTTGTTCACAGCCgATGGCGTTTGAGAGGGGGCGTGGCCACGGCAGCGGTGAGCCCACGCGGCGTCCCCTTGGCCTATGGTCCTCATGAACCTGATACTTTAACACACCGAGGCCCCGGAGTTCAAATCTGTGCcCCCCCCCCCaCCCAAATATTGATTACAGCTGCTttaaccctcctattacctttagggtcaatttgagtccattcaatgtttaacgtctctaaagaaatgattgacatcatgttttttgcttcatatttcatgacttttcctaatgtattggggacaactgggaaaacataaaattcacatgatgatatgtttttaatgtcctgaacataacttgtacgcatcggtgttctttggggtcaatttgaccccaggctgtttttcactgtgtaaaacatataagaaatatcaactttttaatttatttaaagggctatttaggtcgtcaacaaacaaacataaaagtacctcacacttaaacttgggaaacaatattaattctaatcattttctggaggttttaattgctggggtcaaaaaaggtaaaagatgttggtacatttgaaggtgacaggaggttaaGATGTGATCATATACAGCCCAGCTTAGCAACAGCAGAGCGGTAGAGAGCGGAAGGACCGCCTCCACAGGCAGCGTGTCCATCATGTGCTCAATGGTGGAAATATTGTCTCTGTGGAAAGCATCAAGATAAAAATGAGGTTTTTCGGGACTCCTTTATAGACGGAGACGACGCGGTCCGCCTGGAGGACGTTCACATATCTGCTGGGCCTGTACGGTAtttttttTtAAATAATGACGTCCTACTGGATCCCATGTAGATTTCACTTGGAGAAGGTATATACCATGCATGCTAGAAAAACGCCCCTCCCCCCCTGGTAGTAGtAGTtgtaaataaccccttaaaaggtttattgttttgtgttgattgccttattttgtatctgcattattggttttgatgtatgcctttttatattgttttaatgattttgtatatgttttaatctacttccgctttgagctaaatttgacttttattttgaaatgttaaaaggaagcgcacctttattttatgttaatataaaaacttgacggcacggctaagtgttacggacggatgcgcatttgatataaagttgtcatagctttaatggacccgtatgaggctaatgctcttacggtggtgacaaggtgttatttactcaagagttttggttcatgtttatacaacgaaagaggaaataaagaagttcaccagcagtaaagtctcacgccgattgatatacggggatccgttacagtAGTAGAGGCCATTACTGCAGCAGGATTCCAGCGAGAGAACATGTGACTCTTGAGGGGGTTCCGACAGTTGTGATGTGAGTTGTAAGGACGTCTCAGAGACATATCCACGGATATCTGGAGCTCCTCTGACGCCTGGCCCGTTGTCTCGTGATGGTCCTCAGAGTCCTGCGTCTGAAGAGGCCCCGCCTCTCGTGACCCTGCGGGGAGCCGAGGGGAAGGCGTGGCTTATCCTCAtGAAAGAGTCCCGGTCAACCCGTCTGATGCCGGCGTTCTCCGCAAACATCCGTCGCCCGCTGCCTCCCCCgtCCaCCCCCCCGACAAACAAACACTGCCGCTGCTTCCTAATCCTCCATTATGCATCCTGCGACGGAGAAAgGAAGCTTCGGTCCCTCTGATCCCTCCAATGTCATGTGGCCCATTTTGTTGCTTTTCGCTTTTGTCCTCTCGTGTTcCCCCCCCGCCCCTACGGAGTATtcaattcaattaagtttatttctatagcccattttcacaaattataaatttgtcccagagggctttacaatctgtacacatagacatcctgacctttgacctcacgtcagatcaggaaacactcccaaacaacccttcatggggaaaaaagtgaagaactcttcaggagagaacagaggaggatccctctccaggatggacagaacaatagatgacatgtgaccagatgaacaatagatgtcatgtgaccagaaggaatcattacagagtaataacacattcaatgagtatgacagagtgtatgaatagttggtagtcggcatggaccacgatccagacctccgtgatccatcaggcagatggaggtagagaggaggagtgggcggagtctcccatggcgtagttggtagtagATAGACgGCGTAGATACGTCGTCTATGTTCTTACCTTCGGCTTTCAGCTGgATGCTGTTATCCGGGGCGACTTGTAGCTGGTGGCTATGGGAGAAGTGCCTTGCCCAAGGGCATCTCGACCGTGATGGATGTATTTAAAAGGTTGAATTATTCAGTTTGAGTTCGTCTTGAGTCGTCACACTTTTAGCTTTTGCGAGTATGCGCTTCTCGAAAGCCAACGTTTTTATTTCGGATCATCCGTTTAGATTCTCGCTCTGAGTCTGTCATTCTTCTGCAAATATTGTCTGCCTGCTGTCACcGTGGTTACCACGTGTTTTAAGTATTGTTCCTCAGAGATGAGACCATTGAATGTGTGATTCCCATCAATACTCAATCACATCTTCCACGATCCATCTCCTTCGTATCTCAATCGTCCTCCATCCCCCCGAGACTCGGTCCTGCCTCATTTTCTTGTGTTTCCTCTCCTCCTCCAGCCCTCCCCGAACTCCGGCTAGGATCTTCTCTTCCCGTTGGAGACCGTCTCCACCCCCCACATCCAGCAGCCATGGCAGAAGATGCGGACATGCGCAATGAGCTGTCAGACATGCAGCAGCACGCTGACCAGCTGGCCGACGAGGTGAGAGCAACGCGGGTCTCAAAACACGACACCACCACGACGAGGATGACTCGTTTAATCCAGCGTGACATCATTTGTTATCAATTTTTCTGAATCTAGAAGCTCAAACAAAACTGCATTCTCACATTATGAAGGATGCTTTATAGCCCACGGTCAAAATaAAAAAAAGGTAGTGTAGTCCTGGAGCGgatacaaatataaatgatacagcaccttgtgtgtgtgtgtgtgtgtgtgtgtggagtatacctgcatcatgcctcttgacactacactgcacagcagcatcctgagtgtgtgtgtgtgtgtAGGAGTACACGTGACACCAACGTACGCACgtgggatgcaaatttgcagaactaattgcgggagtgtgttcatgtggaggaattcatctgagtgtgtgtgtgtgtgtgtgtgtgtgtttcataagcatggagagtgagacaaagTCACAAGTCATAGAGCACATAAGCCCACAACCCTTCCAGCGTCACATATGTTTTACACTGACGCAGCTGAgtagaatattaaacacacacacacacacacacacacacatgtgaataAGGGGAATGCACACAAAATGGCGGCTTAAGAATGACAGATTTCATTTTTTTTGCTCCCATGAGCTCTCAGACTCACAGACAGGACAACCGCTCCTGGGTTCTCCGGTTGCTTTATTTCAGATGAAAAGAGGAAGATGGGAATAAAAAAAGGAAAATGGGTCAAATTAAAAAGGGAGCAAGAAAAAAAATAAGAGAAAAATGACTGCCGAACACAACAGTGGCTTTTATTGTAAGAGTAGAGCTGCTGTGTTCGACTGGCGGGTTAGATCTCAAATGCTGAGAAACAACTTGATTTTGCTCTTAAATCTAAATCCTGTCTCCAGCTCTctaaagctggagacaggattatatatatatatatatatatatatatataaataattatatgtccatatatatatatttatatataaataaagttatatatatacataataatatatatataaataaatatatatatatttacatataaacatatatatatatatatatatatatatatatatatatatatatatataatgttataaacccaaacacgagggtgttagatgttccgaagtttgtgggacgtcctcaacaagcataaagctgtcaggatgtcgtagccagagagaggttggacccaaatgccaacaacttttccacagaagatttattccttttcagaaaacgggtcaattcaattcaattcagtttatttgtatagcccaatttcacaaattacaaatttgtctcggagtgctttacaatctgtacacatagacatccctgccccaaaacctcacatccgaccaggaaaaactcccaaataacccttcgtaaacattgtaaacatgagtttattaccgtaatctctagtttcaagtcttactcgatacagcatgatgttaatttttgtaaattatggcccatgtagggttaaaaagaccataacgttgggtacgctttctcgcggggctagaaacgtgtacgtcgtcttttcatttaaaatatggtaatttgcgttcactggttgcaaaaagtcaaagatggcgacgcctgaattgccgaactcgaggcttcaaaacggcaAAAAAACCCTCTTTGGCTTTATGCTCTTCTGCTGATTCACGTGTTGAGGGTCAGATACGTGAAtgaacgtgaagctacagccatgaggcggctggcttcgcctacattaagactggaaacagTCTTTACTCTAGAGCCTCTCAACGTCACTGACGACCAAGTTAAATAATCATTTTTGTTTTATTCGTACAAAACCTAAACCGTATCCTCCAGTTTTTGTACATTAAACTCTTCGAGTGAAGCTAACGGCCTCCAGGCTGAATGTCGATCGCATGGCGGTGATATCAAACTTCTCATTTGCTGTCAATCCCAGCAAGACTTCAAGGAATGTGTATTTGCCGAAATGTTGAACAATTCAGATTTTTTTCCCCGTGTTTTGCGTGAAAGACAAAACAATGAGCGTAACgCaTTTAAATGACTTGAGTTGGTTTTCCGTGGCGGGCGACCCGTTGCACGAGAGTCAGGATGTTCACCGGGCGCCATGTCAGTGACGGACGCTTTAATCTCCCTCCGCCAATGAATTAGAAACACAACGAGTACACGGCTAAAATAAAACTACAGCCATAATTCTGTGGGCCcAACAAACACGATGTTTCACAACAAGCAGCAAGTCTTGTTTTACGAATAAAAAACAGGTTTTGTTTAATTGTTGCGACAGACGTGACATGATTCGAGATTTGGGATAACCGCTCGGATTTTTGGACTCTCACAAATTTTTCCGACATTTGTCCTCGACATGACTCACAGTACTTTgcgtccccctgggggtacgtgaaggcactgcagggggtacgtcagattttttttttatctcacgtaaattgctattcattcaaaaatcctttaaaatttttttttctttcataaataatcattacaacataaatgtaacttcatagacttttatataaagcaggctatttaaagtaattatatgaaatcctttgcgtacctaccatatcaagatggtttgacccaaccgggcacacacTGCCGTCTTGGAAATCAGCTGgtatatttaaaacgttgcggcattgctgtgtgtgtgtgtgtgtgtgtgtgaatgtgtgtgtgtttgtgtgtttgtgtgtgtgtgtgtgtcgcagtaagatagaatatgaactgctgtgcACAGGATCCTCCCGGTGTCCAGACGCCTGGTCTGAGGTCAGACACCTTTCCTCAAGGGCCCGAGAAGGATgGGGGGGGGGCGGGTCACTGAACCCGGTCCACCCTGGCGTGTTCCCGCAGACGCCGCCGTATTTAAATCCGCCCTCGTGTGTGTTCAGGGTAACGGAGGACGCTCGGGAAAATGAGATGGATGAAAATCTGGAGCAGGTGGGCGGCATCATCGGGAACCTGCGCCACATGGCGCTGGACATGGGCAACGAGATCGACACCCAGAACCGCCAGATCGACAGGATCATGGATAAGGTACCCGGATCCAGATTTCAGAGCATTTTATTCTATTTACCATCGGGTTACGTTGATAGCTGAACTCATTAAGCGTAGAACTTTATTCAAGCCGTTGGTAAAGGTAAAGGTTGTCATATTTTATAAGATACCCCATTCTGGATTTTAACTACTTTCCAGTGAAAATGTGATCTTTGGTCTTCTTCAAGAAAACTTTGCCTGAGCTTTTTTTTCAGGGATATTTTAAATCCACCGCTCCTCAGTCACAAGTCAGATCCTCAGACATCGTTCTGAGTTAAAGAAATCCTCTTCCTCTTCCTCTTCAATCAGTAGCTCATTTCTGCTGTGTGTGTGTAGTGGGGCTGAACCAGCTGCACACATGTTCAGCTTAATTGGGATTCATAAAAGGAAATGTCACACTGtttatttttatttttttattatttatttatttatttgaacagggaccgcacacattaatcaccccaggagtaaatgtgtcagttttagcgaaggctaaatttcaaccgtagATGTGCCGGCGGTCGTCCGTTCCTCCGGAAGAGGCCGAGAGTTGTTCACAGCCgATGGCGTTTGAGAGGGGGCGTGGCCACGGCAGCGCCCTCCCCGAACTCCGGCTAGGATCTTCTCTTCCCGTTGGAGACCGTCTCCACCCCCCACATCCAGCAGCCATGGCAGAAGATGCGGACATGCGCAATGAGCTGTCAGACATGCAGCAGCACGCTGACCAGCTGGCCGACGAGACGCCGCCGTATTTAAATCCGCCCTCGTGTGTGTTCAGGGTAACGGAGGACGCTCGGGAAAATGAGATGGATGAAAATCTGGAGCAGGTGGGCGGCATCATCGGGAACCTGCGCCACATGGCGCTGGACATGGGCAACGAGATCGACACCCAGAACCGCCAGATCGACAGGATCATGGATAAGggaccgcacacattaatcaccccaggagtaaatgtgtcagttttagcgaaggctaaatttcaaccgtag

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR000727	Domain	Target SNARE coiled-coil homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19305	SYNAPTOSOMAL ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005484	Molecular Function	SNAP receptor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0006906	Biological Process	vesicle fusion	Interproscan
GO:0016082	Biological Process	synaptic vesicle priming	Interproscan
GO:0017075	Molecular Function	syntaxin-1 binding	Interproscan
GO:0019905	Molecular Function	syntaxin binding	Interproscan
GO:0031201	Cellular Component	SNARE complex	Interproscan
GO:0031629	Biological Process	synaptic vesicle fusion to presynaptic active zone membrane	Interproscan
GO:0070032	Cellular Component	synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-