Gene detail

Detailed information of HS11278 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS11278	RWD DOMAIN-CONTAINING PROTEIN 3	chr12	20198305	20203556	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS11278

ATGTCTGAAGCGGCTTTTGAGGAAGTTTCCGTGTTATCGTCCATTTACTGCGGAGGAGGAGAGTTCCAGCTCGTCCAGCAGTCCGGTAAATTCGCGAACATTTCGCTGCAAACACCGGCGTACCGAACATTTTAGGCTGCAACGAACCGACCGCGTCACGTGACTTCCGACCTCAAGTCTTCGCCTACACTACTTTGCGGAAGTGAGATGTTGAAGCCTCTGTGTTTATGTAGCCAGTTGCAACCAACAtTGAGTTAAATCCAAGTTTCCAAGTGATTTTACTGCTTCTATAAACATGACCAAATATATAGTCATAAAGAGACAATTGCTGTATCCTGAATTATGTCCTATTTTCTAAATAAATTCTTCAAACTGTTCGCCTTGGATACCGAATGAAGAAAAGATCATTAATGTTTTCATTCGCCGTCAGCTGTTTCTGAATAACATTCACTATTTTAAGTTTGAGTTCTGCGAAGGTGTTGACAATAACCTGTGCCCCTCTCTGTCTTGCCATGCAGTTCAATTACAAAATGCAGGTGTTGGACAAATAATTGCACCTCTGTTTGCCTTCTAGCTCAGGGTGGGCTCATGGTCCAGATCAACAGCACCGTTGGAGGAGAAAGAGGGCCGGACGTGAGACTGTTGTTCCATCTGCACCCCCGCTACCCTTCCTGTCCCCCCGCCATCTCCGTCTCCTCCACTGGTCTTTCCAGGAGTCAGTGTCTCAACATCAGACAGAAGCTGCTGGATCAAGCTGCAGCTTTACCTCCAGAACCGATGGTCCATCAGCTAGTGGAGTGGCTGCAGGTAGAAGAGCTCACTGACCGAATCCAACAACGACAGCATTGCTATTTAATTTTTCTATATTAAAGGAGTCCTCCACAATAATCATTTGATCTGTGTGAACAAACCCCCCAAAAAATAGCAGTGTGTGGAGGTGACGGAGAACTGCAGAGTCAACAAGGATGAGGCGGAGGAGGTGAGAGAGAGAGAAAAGGAGGAGGAGTGGACGGCGGTGCTGTCGTTGGACCACATCCGATCTCAGAATCGCTACACCAGTCTGCTGCAGCGCTGGACCCAGCAGCTGCAGCTCGCTGGGAGGTTACTACTGGGACGAAGTATACTGGTGATTCTGCAGGGAGCCAGACCCAACATCAAGGTACCGACGCACCTGTTTAGCCCGCCAAAAGTTTATTCATGTGTATGCCCCTAAAACAGCATGTACTGTAAGGCTGGCCATGTCTTGTGCCTTTTAAATATGTTTTGAGTATGCCCTGGAAAagccatggtggctcctctgtgtggtggcaacacatcagacatgtcaaacattggagaggagacattaacgagccgtgctaaaggaagtcatcacagctccgagctagcggagctacggctcctccatcaccggctagcggagccacagcgagggcagctgctaccccgagcagcgcggctctctctccggtaacaagcaggcggcgatcaccgatgccgtaacaaagtgaagccctgactgtggaggtaatgtggccactgaaggttgccaattcacattgttcttttaaatcatccgaagatgccagcctgctatgtgacgcttgtgttgaaagcaaacgttcatctcagctcattggggctccgtcactataagagtcccgttgtcaacgtgtggaagggccgatgtctttctgtcggaccaaagcctgaaccactatttaaagtccaaacagagggattcgcacgtaaaggataatagtttgattaaccctcctgttaccttagggtcaatttgatcccattcaatgtttaatgttggtgttctttcttgtcaatttgaccccaggctgtttttcactgtgtcaaacatataagaaatatcaactttttttatatatttaaagggctatttatgtagtcaacaaacaaacaaagtacctcacacttaaacttggaaaacaatattaattctaataattttctggaggttttaattgctggggtcaaattgaccccaagggtaaaatatgtcagtaaatataaaggtaacaggagggttaaacattgaatggggccaaattgacccgaaggtaaccggagggttaaaagaataaacattTATATTAGTGTTTATAAGAATAAACATGTatacaaatgtttattctttgaatcaaactattgtctctcattcatttgtttcctttaaggtacagtgtatgctttgtaattctcattgtttgaatactacattttcaaaaatgttcatggacacaccgagatttcagtttggtcatggaagtttggtttaaagtcatggaaaattcttggaaaagtcctggaaatccattggtcgacatgtgtaagaaccctgTACAGTTGTCGAATAGGCCGTGTATAATACTATGAAATGGATACATCTTTAATATATTACTGTGATAACGAGGTAAATAAATGCAGGCAAAACAGGAGAATATGATATGGTTTCCCATTAACAAGAAGAACAGTGCACTCACAATTAATATAGAGCTTATTTTCTTCTGTAGAACGAAGCTAATAATGCAAaattccttgtagcccaaggtgatgtcatcaaatgtcttgttttggcgggccagcagtcccaaaaaactaaacgaaaacatcaactttattgattagtgaagacaagcaagcgttcacatttaagaagctTAacctgttaacccccacccgtttttttaggtttctgctcgaaatgacatacccaaactaaaaagggtgtagctctgcaaccacacaagctatttgaataatgttggtgttataataaagggaacacaatgagcttttgttcagatgtgtaaatattagcatatatgttactggttaagagtaaataaagatgaatcttctattttcatagaaatttcaggttcgattagaaaaaaaagcactttcaggatgaatatatcctggatggatgcacagcaaaggcctaaaatcacccagataataatacaacttgtgaacagactctctgcaaagtttgactcagaaaaaataaagcagaacaatagttggagactttttagtaaagagaatttaggcgaggtctctaaatttgcatttgggcacattgaagcaccatctgtgccatttgacttttctcatgtaccaaaccatttatttcattttcacttttacttgtggtgatcaatacatgcaaatacatcattatgtggctttaaaacagtaaatcaaagataaaaaaacgatcaaacaaagtggtgctggggacatacacacacactaaagccatgccagctggaatgcaggggagagaaacgtttttttcttcttctcaagaacaaaagtatgttgaatttgctgaatgtaaagctatgaagcgattaatatttctgtgttctttggcttatatctcagtgatactttggttcagaaggattctgtaaagatatttagaatctgtgtgaagtcctcttgctttcgaacatctcttcttttatgattgcacaaagctacatgtcgctagctacggaaacgttctgagtgggccgacacctgacaaaattatgattatgttatttgtatttttatttcagttggtgtttgagttgtgtttaaatggctcactgatacttgtagccccagttgtcttctttaatttgatgtacaacctcaatatatttgctcatgtttattataatattatagacagtttagaacaaaacatcaaatctgccccacaggtggggcaatggggcttaaGTGGTTAAACAACAGAAGGTTAACAATTTTATATTTGGAAAGAAATGTTTATTGACTTATCATTGCAGCTCTGACATAAAACACAATGCACAGATCAAAGAGTTCACCACACTGACGTCGATTCCTCTCCACAAAAGGAGAGCATCAGTTGTGTCCCAGGACAACTTCAGTGAAACATCCAAGTGACAGCGCCCTCTAGTGGTTGAAGGAATTGTAATGATCCTGTCTCTTAACTGTCCCGTTTCACTGACCATGCGAGGAGAGAGGAAACAAGTCTTAAGAGAatatataatgacaatgtacactagcgttcaaaagtttggggtcatccagacaatttcgtgtcttccatgaaaactcacttttatttatcaaatgaattgaaaattgaatagaaaatatagtcaagacattgacaaggttagaaataatgattaatatttgaagtattaattttgttcttcaagctcaaaggaaggccagttgtatagcttatatcaccagcataactgttttcagctgtgctaacataattgcacaagggttttctaatcagatattagtcttctaaggcgattagtaaacacaatgtaccattagaacactggagtgatcgttgatggaaatgggcctctatacacctatggagatatttcattagaaaccagacgtttccacccagaatagtcatttaccacattaacaatgtatagtgtgtatttttgattaatgttatctttattgaaaaaacagtgcttttctttgaaaaataaagacatttctaagtgaccccaaacttttgaacggtagtgtatatTTGACAAAAAGTCACCTGCCATGAGAcGTCCTTTCTTCTGATGATGGTGTACAGCTGTCAGACATTGTTAACAGCTGGAGAGACCCTTAATCACTGTATTCATACTCATGAAGACAGTTGCCATCACTGTACTTATATTAtTAAAGACAGTTATcAtcaGTGTACTaTTACTAATAAAGACTGGGTGTAAAGGTTTTACAGGTTATCCCTTATTTAATGGAAGTCATCAGTTTTAACGGCAAAGTAACTTGTGCATAAATGCCATGTTTTCTAAACATGTCGGACTCCTGTAACCGTTGGAGTTCATTCTGACTGCAAATCATTTCTTTTCAGGAGTTTTGTCGCCTTTTGAGAACGGTGAAGGTGGATGTGGATTCTTCAGGCAAGAAATGCAAAGAGAGGATGATGAAGGTTCTCACTGAAAGCCCGACGTCTTCCTCCGGTGGACATGGGTATGGATGACAGACGGATGACTCTGTCGCAGCAGGAGAATGGAGTGAGGGCAGTCCACGAGCTTTTCTCTCTGCGTTTCTTTCCATGTCTTCCCATCAGGCTCCAGGGTTTCGTCGTGATGAACTACAAGTCACTCCCACAGCTGGCTGCAGCCTTCCAGGAAATCAACATGACTGGTCTCTACCAGCAGATACGGCCGTCACTAAGTGGCATGTCTGAAGCGGCTTTTGAGGAAGTTTCCGTGTTATCGTCCATTTACTGCGGAGGAGGAGAGTTCCAGCTCGTCCAGCAGTCCGCTCAGGGTGGGCTCATGGTCCAGATCAACAGCACCGTTGGAGGAGAAAGAGGGCCGGACGTGAGACTGTTGTTCCATCTGCACCCCCGCTACCCTTCCTGTCCCCCCGCCATCTCCGTCTCCTCCACTGGTCTTTCCAGGAGTCAGTGTCTCAACATCAGACAGAAGCTGCTGGATCAAGCTGCAGCTTTACCTCCAGAACCGATGGTCCATCAGCTAGTGGAGTGGCTGCAGCAGTGTGTGGAGGTGACGGAGAACTGCAGAGTCAACAAGGATGAGGCGGAGGAGGTGAGAGAGAGAGAAAAGGAGGAGGAGTGGACGGCGGTGCTGTCGTTGGACCACATCCGATCTCAGAATCGCTACACCAGTCTGCTGCAGCGCTGGACCCAGCAGCTGCAGCTCGCTGGGAGGTTACTACTGGGACGAAGTATACTGGTGATTCTGCAGGGAGCCAGACCCAACATCAAGGAGTTTTGTCGCCTTTTGAGAACGGTGAAGGTGGATGTGGATTCTTCAGGCAAGAAATGCAAAGAGAGGATGATGAAGGTTCTCACTGAAAGCCCGACGTCTTCCTCCGGTGGACATGGGCTCCAGGGTTTCGTCGTGATGAACTACAAGTCACTCCCACAGCTGGCTGCAGCCTTCCAGGAAATCAACATGACTGGTCTCTACCAGCAGATACGGCCGTCACTAAGTGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006575	Domain	RWD domain	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR038840	Family	RWD domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15628	RWD DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0032088	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0033235	Biological Process	positive regulation of protein sumoylation	Interproscan
GO:1902073	Biological Process	positive regulation of hypoxia-inducible factor-1alpha signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-