Detailed information of HS10598 in Pseudoliparis swirei Gene info
Gene IDAnnotationChromosomeStartEndStrand
HS10598COLLAGEN ALPHAchr1214717431569620-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00041fn3Fibronectin type III domainDomainInterproscan
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR003961DomainFibronectin type IIIInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan
IPR013320Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR036116Homologous_superfamilyFibronectin type III superfamilyInterproscan
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR048287DomainThrombospondin-like, N-terminal domainInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24020COLLAGEN ALPHAInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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