Gene detail

Detailed information of HS10480 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS10480	DNA POLYMERASE EPSILON SUBUNIT B	chr11	23366640	23371779	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS10480

ATGGATGTTGCTCGCCAAATAAAGACAAAGATGTCCGCTGGCTTCAAGATGCGGGGCCTCATCCTGCGACCGTAAGTCTCGGAGGAGCAGCTGCGGTGTGACGTCGCTCTGTGAGATCCTGACGTGAACaTGCAGCGCTCGGCTCATGATGGCGGCATGTTGTGAGCAACAGCAAGTTGTCAACATCAAGCAGGCTGTGGTTGTCTGTCGATTATTATGTTGCAGGAATTCTTCTCTAACTATCGATAACCAGGCCAGCAATTTAACATCGCCTGTTTGAGGGATTCACTGGAATAACGACACAGAAAGCGGTCAATGCTCACTCTTAAAGTGACACGTGTATTTAAATATGTAATATATAACAAACAAACAATGAACATGCACACGATATGTAGCCTGTTAGTTTCtaaagtggaaaatattcagattacatgttaattatttccatggcttttttaacataagtaagcacacacacactcacacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacagtcctaacaacatgcTGTGTTCTTGTCGTCCAGTGAGGCCAGCAGACACCTGGTGGAGGTCCTGGAGTCGACCAATGCCTCTGAACTGGATGATATTCTTGAGCGCGTGTTGGACGCAGTGGAGAAGCAGCCATGTAAGAGCGTCTGTGGGTCGTGTTCAGTGTGCAGCTCCTGGCTCTCCTGGAGCCCGTGACCACAGCCTGTGTTTCCAACAGTGACCTCCAGTATGGTGGAGCTGTCCGTGGTGGAGATTGCAGTTCAGGATTGTACTCGCTCTTGTGATGAAACCATGTAAGTGCAACAATTGGACATGTGCACCACATTTCCCGTGGTTGAATTATCTTAAGCTGAAAGTTGTCTAACTCTCTTCCAGAGATAATGTGTTTAACATTATTGGAGCCTTCGATGTGCCCAGATACATTTACAGCACGGAGCGGAAGAAATTTGTCCCGTGAGTGAAGGGACCATGTCTCGCTTTGTGTCAAATTCAACCCCAAATGATGTCAATTAGAAATGTGTCATTGTTGTCGTGTTGGAAACAGTGAATACACTCCCACGTACGACAATTTTCACTTTGTGTTGTTCTGTCAGCCTTGCCATGACGAGCCATTCGGCACCCGGTCTGTGTGGTTTGGCCAAAGACAAAGCTGAACTCTTCAGGGAGCGCTACACCATCTTACAACAGGTCCGTGGCTTTTTGGTCTTTATTGACCGTGCAGACGGTGGGGCCACAGTTGGTGTAGCGTGTTGTATTTACACAGACACATCTTGTTGTAGCGGGTCCATCGGCACCAGCTCTTCACCCCACCTGCAATAGGAGCTGCTGTTGACGAGGGCCAAAACAAATTTCAGGTAACAAATCTTAAAACACAAATTGAAAACCAAATGCATCTTACTGTTTTGCATTTGACGAACAGATTGGTGTTTTTTTGTTTGTTTTTGCTTATTTGTATTTTCTAGCTCAAGACAATTGAAGCGCTGCTTGGTAGCACCTCTAAACTGGGAGAAGTGATTGTCCTGGGGATGGTCACCCAGCTGAAAGAGGTGAGTAGGAGAGATCTCCGGAGCCTTCCCGTTTTTCCCTCAATGTATTATGTAGTTTCTAGAAGATTTGTTAATTTTGGTTTCAGGGTAAATTTTACCTGGAGGACCCAAGTGGAACAGTCCAGCTTGAAATGTCCAAAGCAATATCCTTTGATATGTTTGTGTGAGCTGATCAGCATCCAAACGACATCATACAAGATGTTGTTGCTTTTAGAGTGGAGGTGTTCCTTAACTATGTTCTCACCAGTTTCATAATGGCCTGTACACAGAATCCTGCTTTGTGCTGGCAGAGGGTAAGATAACTACAAATACTACAACTGCAGTCGAGAAAACTAAAATGTTGCATTCATCTTAACCATAAAGTCGTATTGCATGCGTCACAGTGATGGTTTGTCCTGCAGGTTGGTACGAGGACTCTGTTTTCCACGTTAATGGCTTCGGCTTTCCCCCGACGGAGTCGTCATCTGCCACGAGGTTAGTGGACTTGAAGTGTGGAGAATCATTTTCTTTAATTGTAGAAATATCTACAACCTGACATTAGGTATTGCAGGAAGTCTTTTAAGTTTGTATAGCATGAATTAGAGCAAGGATTGAGGGAGAATCTATCTGAATTTGTTTTACCTTGTTGATATGCAAAAAGAAATGTCATTGAAGTAACATCAAGCAAATTACATCAATTATTTTCTCAATTGTAGAGTTTCAAAACTGTCTCCAATTACAATCCACTACAATAATTAAAAAATCTGATGTATTTCAGCTATACGTTCAGCATTAAGTTACCTTTCCAGAACACTGAACTCTCGTAGACATGGTGTCGTGTATGAAGGACACGGGGGCTCACTGACGCTTCTTTGCCAGGGCTTACTACGGCAATCTGAACTTCTTCGGTGGTCCGTCCACCACTTCGGTGAAAGCATCAGCCAAGCTGAAGCAGCTGGAGGAGGAGAATGAAGATGCCATGTTCGTAATTGTCTCTGATGTTTGGCTGGACAACGTTGAAGTGATGGAGAAGCTCAACACAATGTTCTCAGGTCTGGTATTTCACTCAGTGTGAACTCTACTGGTTCAGATTATGCACGATGCGAGACTCCGTTTAACATTCGCTTTGTTCTGTCTTGCAGGCTATGCTTCGATGCCTCCTACCAGTTTCATTTTGTGTGGAAACTTTTCTTCTGCTCCGTATGGAAAAACACAGATCAAATCACTCAAAGGTGACACTTTGGGGTCATCATCACTCATAACCTACTGTAGATTTTGAGATCTGTGTGTATTTAAGAAATAAATGGACCGCATTTCAGAATCTACTACTTTTGTTCTCCTTTCTCCTAGACTCACTGAAGGCTCTTGCTGATGCTATATGTGCGTACCCCAGCATTCACAGCAGGTAGGATCTGATTGTTGTGACTTTGTTCTATTCTTAAGTTTCCCTGCATATTTTGTTCCCTCTGGTCGCTGTGGAGCTGTTTTTTTTACCGTTGCGTTCCTGTTTTGTTTACCTAGTGCACATGCAGCTGACACACACTGTTCCACTGGTCGTAGGGTAGCAGTAACGTACCAAGAAATGTTACAATGCTGGATTTGAAATACTTGCCAGTGTGGAAGTAAATGCATTGAGCATGCTGGTTAGAGCGACAGAGTTTTGGTCAGCAACATGAATGTCAACAGAAGTTTTGTTTGTTAACATGAAAACTCCATACGGCACCTTGAACTATTCAATGTCAATGTGTTCACCCTGCAGCTGTCGCTTTGTGTTTGTTCCTGGCCCTGAGGACCCGGGTCCAGGCAACATCCTGCCACGGTAAACATTCAGAGAAAACTGCTTTTTAATATCATTATGTGAGGTTTGGATAAATCTAAATGAATATGTTTTCCTTAGGCCCCCTTTGGCAGATCACATCACAGAGGAGTTCAGGCAGAGGGTGCCATTTTCGGTGTTTACTACTAACCCATGCAGGTAAAACACGAGGCATTACAAATAAGTATTTGTTTGTAGAGTTATCCGGGTTCTGGTGTCCACAAGGTCGTTTGTCAGCCTTTGGGAAACGGGACATGTTGGCAGTGTTTCTGTTCTCAGAAACTACAAGTGACGTGCTTTGTTCTTCCTGTCAGGATCCAGTACTGCAGCCAAGAGATTGTCATCATCAGGGAAGACCTGGTCAACAAGATGTGCAGGAACTGCATCCGGTTGCCCAATAACAATCTTGACATTCCAAACCATGTGAGTTTCAGCTTCTCTGAGCAAACCTTCGTACTGAGGGGCATTCTTCTCAGTAAACAGTTGTACAGTATTATTAGTTGAGTTGTCAAAGGTTTTATTTTCCTTTGTACCTAGTCATTTCAGCTTTTTGCATCAATTCAAAGTGTGTCTTAGTAGGTATGGGACAATAAGAATATTGCGTCTCACGGTTATCCTGGCCTAAATAACTGCAATTAACGATATTTACAGATAAACATCAAAATATGCTAAAAACACGTtgtgacaggattgtgtccgtcaccagtaggtttcccccccctaagcaccaaggaatgcgcaaccagagggaacgttggtaaaatgctttatttgagcgctctgaccgccgactgtgtctctgctcatggctcccgatcttccttctgccagctcctttatggagaccgactcagataacccacacagatcgtcatcagctggactgattaccaatctgattaccaatcagtccagctgatgacaatcagacaccgttccctgaaccacacccccgctccacccactctgcagccgagcctacaccccccgctgccacaCACGTCAAACGTAAGGTTATGTGATTACTGAACATTTTAATGTAATTTTATTAAGAAGCAAAGCATGATAGCGAGCCATTTTAAGTCACTCATGGTAATATTTACAATAATCCCGATAATCAATTTATTGTGAGATCTGCAATCCGATCCTACACCGTCCCATACCTACTCCCTAAGCAATGTGTCTTTGATGCAAAGATGTCTGTAAACTATTCCGCCTTAGTCTCATTTAAATCAAACACAATTGAAAATGTtCTCCTCTTCCTCTCCAGTTTGTGAAGACCATCTTATCCCAGGGTCACTTGACTCCACTCCCTCTGTATGTGAGTCCTGTATTCTGGGCGTACGACTACTCCCTGCGTGTCTACCCAGTCCCTGATGTCATCATCTTTGCAGACAAATACGACCCATTCAGCATTAAAAACACAGACTGCCTCTGTGTCAACCCGGTAAGAAACAGAAGCATACACTATTTTTTTAGGGGGGAAAAATATAATTTTCTGTCAGTTATATCATTGTCTCAATATGCACTCATGATGGATTTGTCAATCATTTATTTCTACAGGGCTCATTCCCCAAAAGTGGCTTCACATTTAAGGTGTATTACCCATCCAGCAGAACTGTTGAAGACAGGTGGGATGTTCTTCAGGTTTCACTTTTCTCTCCACGTCATTTACTACCGATTACTGTTATTTAAAATATCATATTAATCAGTTATATTTTTGTATTTGCAGCAAACTTCAAGGACTCATGGATGTTGCTCGCCAAATAAAGACAAAGATGTCCGCTGGCTTCAAGATGCGGGGCCTCATCCTGCGACCTGAGGCCAGCAGACACCTGGTGGAGGTCCTGGAGTCGACCAATGCCTCTGAACTGGATGATATTCTTGAGCGCGTGTTGGACGCAGTGGAGAAGCAGCCATTGACCTCCAGTATGGTGGAGCTGTCCGTGGTGGAGATTGCAGTTCAGGATTGTACTCGCTCTTGTGATGAAACCATAGATAATGTGTTTAACATTATTGGAGCCTTCGATGTGCCCAGATACATTTACAGCACGGAGCGGAAGAAATTTGTCCCCCTTGCCATGACGAGCCATTCGGCACCCGGTCTGTGTGGTTTGGCCAAAGACAAAGCTGAACTCTTCAGGGAGCGCTACACCATCTTACAACAGCGGGTCCATCGGCACCAGCTCTTCACCCCACCTGCAATAGGAGCTGCTGTTGACGAGGGCCAAAACAAATTTCAGCTCAAGACAATTGAAGCGCTGCTTGGTAGCACCTCTAAACTGGGAGAAGTGATTGTCCTGGGGATGGTCACCCAGCTGAAAGAGGGTAAATTTTACCTGGAGGACCCAAGTGGAACAGTCCAGCTTGAAATGTCCAAAGCAATATTTCATAATGGCCTGTACACAGAATCCTGCTTTGTGCTGGCAGAGGGTTGGTACGAGGACTCTGTTTTCCACGTTAATGGCTTCGGCTTTCCCCCGACGGAGTCGTCATCTGCCACGAGGGCTTACTACGGCAATCTGAACTTCTTCGGTGGTCCGTCCACCACTTCGGTGAAAGCATCAGCCAAGCTGAAGCAGCTGGAGGAGGAGAATGAAGATGCCATGTTCGTAATTGTCTCTGATGTTTGGCTGGACAACGTTGAAGTGATGGAGAAGCTCAACACAATGTTCTCAGGCTATGCTTCGATGCCTCCTACCAGTTTCATTTTGTGTGGAAACTTTTCTTCTGCTCCGTATGGAAAAACACAGATCAAATCACTCAAAGACTCACTGAAGGCTCTTGCTGATGCTATATGTGCGTACCCCAGCATTCACAGCAGCTGTCGCTTTGTGTTTGTTCCTGGCCCTGAGGACCCGGGTCCAGGCAACATCCTGCCACGGCCCCCTTTGGCAGATCACATCACAGAGGAGTTCAGGCAGAGGGTGCCATTTTCGGTGTTTACTACTAACCCATGCAGGATCCAGTACTGCAGCCAAGAGATTGTCATCATCAGGGAAGACCTGGTCAACAAGATGTGCAGGAACTGCATCCGGTTGCCCAATAACAATCTTGACATTCCAAACCATTTTGTGAAGACCATCTTATCCCAGGGTCACTTGACTCCACTCCCTCTGTATGTGAGTCCTGTATTCTGGGCGTACGACTACTCCCTGCGTGTCTACCCAGTCCCTGATGTCATCATCTTTGCAGACAAATACGACCCATTCAGCATTAAAAACACAGACTGCCTCTGTGTCAACCCGGGCTCATTCCCCAAAAGTGGCTTCACATTTAAGGTGTATTACCCATCCAGCAGAACTGTTGAAGACAGCAAACTTCAAGGACTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04042	DNA_pol_E_B	DNA polymerase alpha/epsilon subunit B	Family	Interproscan
PF12213	Dpoe2NT	DNA polymerases epsilon N terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007185	Domain	DNA polymerase alpha/delta/epsilon, subunit B	Interproscan
IPR016266	Family	DNA polymerase epsilon, subunit B	Interproscan
IPR024639	Domain	DNA polymerase epsilon subunit B, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12708	DNA POLYMERASE EPSILON SUBUNIT B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan
GO:0006261	Biological Process	DNA-templated DNA replication	Interproscan
GO:0008622	Cellular Component	epsilon DNA polymerase complex	Interproscan
GO:0042276	Biological Process	error-prone translesion synthesis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-