Gene detail

Detailed information of HS09850 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS09850	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	chr11	6449790	6451532	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS09850

agaagaagaagaagaagaagaagaagaagaagTttctcactccgtacagtaggtggcgacattcacctttaacgttgctttgtggccccactatttagtgaaagaagaagaagaagacggcgacgacgaaACATGGCGGCGCCCTCTAAGAAAGTGTTCGAGGTCTTCGTGTCTAAAATACCATGGACTACAGCCGGCAGTAAGTCTATGACATGGTTAAAAAATAAGAATGACTATTTAGTGGTAGCGCGATATTCCAGCCACTTTGTGTCCATGATGCTGTCACCTGAACTAGCTAAAAGCTCCGCATGAGACAGGAATGGATTGCATAATGTGAAACAAATTAAAGTTACTAGAGTCTTTCTAGAATCAAAGAGCCGGTTTTCAATTCGAAATGCATTTCCGGGTTATTACGTGCATTCTAAAAGTACTTCAGCAGCTGTGTTAGAACATCACGGTGTAACCTTCATCGTGGTAAGGCATGCCAGAGGACTGTGATAGTCACTTAAGTGGAGGCCTACTACGAATACACCTCAGGACGAACACCCGGGCATTCTGCTGCAGACTCCTTGGAGTTGAAGCACTGTCATTTGTTGAATCAGAAGTTGGAGTGAAACATGATCTTTCCCTGTCTGTTTTACAGAGGAGATGAGGGAGTACTTTGGGCAGTTTGGAGCAGTGAGGAAATGTCTTCTTCCATTTGTAAGTTGTCAGCATTGGAATGACTAAATTACTCTTTTTGCCAAAGCTGAACTATGGTGCTTACATTGCTTGTGTTTGCGTGTTGCACCAGGATAAAGAGACCGGCTTCCATCGAGGCTTCTGCTGGGTGGGCTTCACAACAGAGGAAGGACTAAACAATGCGCTTCAGAAAGACCCACACATGCTGGAGGGCGCAAAGGTAAACAAATGATGGTCATCACCAAGCAAAGTTTGGTGGATATCGAAGTCCTCGTTTACAGAACACAATAGAAGCTGAGTTATCGACATAATTTCACATAGTACCATGACCATTTATGCtgcgttcacaccaaaagcgttgcgaattgtttgtgcgagaagatccaatgcactgccgatgtacagacacgaatggttgcgattgacgttaattttcgttgagcagtgcctttgacgtgaTATATATATGataatgttatgaacccaaacacgagtgcgttcgattttctgacgtttgtgggatgtccacaacaagtataaagcagaacgagtggttagttccatggtggatggtagaaattacaactgcttttacagagacaaactacaaagataagccccgccccCTCTCATCACATGAATAGTCAGTTATGTTTAAACCAGTTTATGTTCACTTGAAAAAAGGGGTGTGGATCTTTCCATAGTATTTTCCTCTGTTGATATTTGCTCTGGAAAGACTCAGTGCCCCACTCAAGGACAAACCGGCAATGCCTTGACTATGAACTGGCACCCCTCCAGCTACCACTCCCCACACCAAACGTTATATAATAGCTTTCCGCAATGATCATGATTCAAAATTCAGCCACATATCTGCAAATATAAGCATATGAGGTTTTTTAATTTTGTTTTTAAGACATTCTAAAATGTTTATGAGCCAGCTCTGAAAATATTCATATTATCCTTTTGGATTCCCCTGTTTGTTTTCAGCTGCAGGTTCAGAGGAACATACGTCCATTTGCAGGCAAAGGTCAAATGGAGACGGTGAACATGACTGAAGCGCTGagaagaagaagaagaagaagaagaagaagaagtgaaagaagaagaagaagacggcgacgacgaaACATGGCGGCGCCCTCTAAGAAAGTGTTCGAGGTCTTCGTGTCTAAAATACCATGGACTACAGCCGGCAAGGAGATGAGGGAGTACTTTGGGCAGTTTGGAGCAGTGAGGAAATGTCTTCTTCCATTTGATAAAGAGACCGGCTTCCATCGAGGCTTCTGCTGGGTGGGCTTCACAACAGAGGAAGGACTAAACAATGCGCTTCAGAAAGACCCACACATGCTGGAGGGCGCAAAGCTGCAGGTTCAGAGGAACATACGTCCATTTGCAGGCAAAGGTCAAATGGAGACGGTGAACATGACTGAAGCGCTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034152	Domain	SLIRP, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052462	Family	Glycine-rich RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007283	Biological Process	spermatogenesis	Interproscan
GO:0034046	Molecular Function	poly(G) binding	Interproscan
GO:0048026	Biological Process	positive regulation of mRNA splicing, via spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-