Gene detail

Detailed information of HS08641 in Pseudoliparis swirei Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
HS08641	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	chr9	20819009	20827797	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

HS08641

AACAGCCAGTCACAGGTAAAAAGCCACATCGAGCGACTCATTTGTTGTGCATGGAGACGTACATGTGACGGTACACGGCAAGCGCATTGGGTTTTGTCATTATTGATTGCCACAAGTACCGTAGAACTACATGGAACATAACTGATGTTGTTGTTGTCAAGAAGGCGTATAACGACAACCAATAACGATCTGCTCCTCTGTGTGTGTAAGTGTTTATCTGGTCAGGCCAGCAGCTCTTTTGAGAGTCGTGTCGTTGTGGTCTGTGAGAAGATGATGAGCAGAGCTTGCTGGGCCAAGTCCAAACATTTAATCCACTCCAAGACCTTCAGAGGCATGACCCTCCTTCACCTGGCTGCGGGCCAGGGCTACGCCACCCTCATCCAGACACTCATCAAGTGGCGGTGAGAACAAAGCACTCAGCACGCTGTGTTATAGCGGCTTGGATTGTAAACATATACACGATGTAATACTAATTGTTTTTCTCTCTTTCGTCCAGCACCAAACACGCTGATAGTATTGATTTGGAGTTAGAGGTGGACCCTCTCAATGTAGATCACTTCTCCTGCACGCCTCTGGTAAGAGAGCTGAAGTTAACATGTTTAAAACAGTGTGATGAGAGAAACCTGTcGTCaCTGTAAATtAATGcTTTTTTTTAACAGCCTGGTGGAACCCATTAACTTTGCTGCTTTTTCTTTTTTTTGGTCTGTTTTCCATCCAGATGTGGGCATGTGCGCTGGGTCACCTGGAGGCGGCGGTGGTCCTGTATAAATGGGACAGACGTGCACTAGCCATCCCGGATTCTCTGGGTCGCTTGCCCCTCTCGATCGCCCGATCTCGCGGCCATACCAAGTTGGCGGAGTGTCTGGAGCAGCTACAGAGGGAAGAGCAGCAGCCACCGGTCCCTCTACCGCCCGCAACTCGCATGTCTTTCTCCCCGGCCCCCGACACCCCCACCACAGACAGCTGGATGGTCAACTGGGCAAACAACAGTGGAGTCGCACCCAGTGGCAAGAAAGGGGGTCCTGCCACCACGACCACCACATCCAGCACtACAAGCCTCAACCCAGGCCAGTAGAGTTCTCATACTATACATTAGTTAGGTCAGGGGTCAGCAACTCACAgctttttagcccctctgtttgcagctctctaaagctttttaaaaatttaaaaatcatatatatatatatatatatttatttatgttttgaccagtggacaatcgtttaaagggaacacctcttatctttgagtttgagctttgactgtcactgaaaataacaaaaatgtaatattcgctgtcaagtgtggttccctgcaggtggctcatcatgatatgcagagccccgcctttgttaaactgtcaatggataaattaaaaaaagaaaagtcctggagaaaaagagagagtttaattctgtgcggacctacatagtcgtctgattgattgaccagtgtatttttttcctactcttcataagagtttgattttgttataaccggtaaaatagtaatacaatgtcaacaattgtctttattctggttccataatttcataaaatcaacaaactattgtttttgcatatataatatgactttatatatataaaaactttataagctgtgatatcaaatagcttttgcggctccggacacattttacttggtggaaaatatagcaaaatgtctcgttggataggaaaggttgctgaaccCTGAGTTAGGTGGATAGCCTCACATAAGTCACAGTAAGATCCCTTTCaTTCTATCTTTGTTTGTGTATTATGCGACTAATTATTACATGTTGTGTTTTTCGCAGACTTGAGAAGGCCCAGGTCAGAGCCCTCCAACTACTACAGCAGCGAGGGCCAAAGAGACCTCCCACTCGCTAAAAAACATAAACCCAACCCAGAACTGTTTCAGACCCGGCCCGACAAGGCCATGTCCGTCCCTCTGAGCCTGGAGCAGCAACAGCCCCACAAGCTGTCCTCTGGTCCCAAGAGCCTGTCCTCGGAGGGCCTGAGCTCAGACAAGGGCCTGTCTACGGGAGGCAGCGCGGGGACCACCAGATGGACCTCCAGAGAGAGCTTCTCTAGCAGCGGCATGGGGAGGAAGGCGTTGGGCGTCAGTGGAAGCAGCAGCTTGGGGAAGGAGAAACTGGTGAACCGGTTGCGGCAACGGGAACAGCTGGGCATGCTGGTGATAGCTGACAGGGAAATGGCTGATGCAGAACTATTATCCTATCGGGAAGATCTGGAGAACCAGGACTGTCTCACACAGATGGATGACCTGCAGGTGAGAGTGAACAACTGTTTTAGCTGTCAGCTAAATGTGTAGAACTTGGCACTACAAGCCACAGATGAAAGATTCTAAATAATTTAGGCCAAAAACATATTGCTTTTGATTTTTTTTaAAAGCCTACATTACAGAAACGACAGAAGATAATATTAGGCCTTCGTGTAGCTGATGATAAGATACATGGAAAGAAACTATCAAGGGGGAAATCTGATAAAACTAGTCTCCTCACTTTAGAGTAATTGTTCTGTGAAGTTTGATTTAAAAAAATACAAAATTGTAGTTTATAATATAAAGTTCTGATATTATGTATACATATTTTATTTGAGGGAGGCTGCAGTATGATTATTTTTGTGGCACCACTTTGGAAAGCGGTACGCAAATTCATTTAATTGTCACCCGTGACCAAAGCGTGGCGAGATGAGACTCCACTCAGACATCACCGCACCATGCAGCCTCTTTTATGTCCGCCTTCTGCATTGGGTAGGCTGCATGCACCAGGCCCACCTGGCGCTCTGTCGATGACCATCACTGCAGAATAAACTCTATATTGATCCCCTTCCATAGCCAAGGGATTCTTTCAGCCATCCATCTCAAGTTAACTCCTCCTCCAAAAGATGAAGTGCTGGATTAGTCATTTTAACAGCATCACTCGTCTTCATTCCACTCTATTGGGCTTTGTCATATGGGCAAAAAGATGTCTAGAATATGTCACCAAAATAGGTTGaCACTCTACTGTATATGGTGATAAACTTTAAAAATCTGGCTCCACTCTTTTATCTTTATCTCAACCAAACAGGCCAATATGATGACTCTGGCAGAGCACATCATTGAAGCAACTCCAGAGAGAATCAAAAGGGAGAACTTCACCGCAGCAGACTCCGTGCCCTTAGACACGTCGGGGGTCAGCAACACCATGAACTGGCTGGCCAACTACCTTGGAGATGTGGAACAGCTGCCGAGCATCATGCACCTACGGTAAGGAGCACCGTGGGGCGGGAAATAGCAGATACGCgtgtgtgtgtgtgtgtgtTCTCCCCACTGCATTCATCCTTCTTTACTACCCAGGTATTGTCCTGAAAGGTTTCCACTTTGTGGGAGTAAAATGGACAATAAAAAACAAACACTGTGAAAAACACATTTATATGCAGCACTTACTGTAAGGTGCCAGTTTAAGGTCAGAGTGAAAAGTGCCACAAACTGTTGAAATAGGATATTTGTATTATGCATCAAGCCTCAATAGATCATGAACAAATTTAGAACCGTGAAATGTCCATTTGAAAAGAGAGGCTGTTAAATTTGATGGAGGGGAAGTCGCCCAGAATTACTTATTATCCGTTTCAGTGTTACCTTTCAGAACTTAATTTACACCAACGACAGTTTGCAGGCAGTCAAATAGAAAAGTACTAATTTGAACCAATAAACGCTTTTTTGTTCCTTCGCTCTATGCGGCATAAAACCTCTGCACACAGTGTATAAATATAATACATTGTTGTATTTGTTGTGACTTTAGTCCTAAAGAACGAAACTGGTCATACGTGTGAGCGTGGGGTAGATGGGTGTCGCGTAAGCTTAAATGCTACATGCTTTATTCACACGCTGAACATACGTACAACCAACAAAAGAATTTGGAAAAAAAGCGAACATATCTGTCATCTTCTATCCGCAGATCTCTTTACAATGAACCCTTGAACCCAGCATCCAACCCCAGCCTCAGTCCTGGGGGGTCTCCACTGAGAGAGGGACCCCAGGAGAGGTCTGCGCTCCCGTCCCCGGCCGACTGGAGTGAGTTCATCAATGCCTCCAACAGCAAAGTGGAGCGAGACCTGGCCCAGCTGACTCTGTCAGATCCAGAGCAGAGAGAGCTGTACGAGGCCGCCCGCCTAGTCCAAACTGCCTTCCGCAAGTACAAGGTACAGGCCCGGCCCTCGGGTGCCTATGCTGTGTGTCCTGCAGCCCGCAGTGAAGGGGCTGTTCTGTTAGGACTGGTATTATTAGAtGGTTTTGCTTTTGGCTTTTGGAGACATGTCGAAGGGTTTCATTTCTTCATTTGGTTTCCGAGCCATGGAGCTCCGATTGTTGCAGTAAAGTTCAGGGTTGtGATACATGTTCATTAGAACTTTTTTGTTCCGGCGTAAACTGTTTCTTATTATTCACAATGTTCTATCTCTCTACCGCTGTCTCGTTCTCTGTTCCTCTGCTcacatacacattacaacataaacaaacaaatatatatacaTCCAAAAATGTCCCTGTGGTTTCAGCATGGGGAGGTGCCTTGAGCAGAGCATGGCCTTGCTTAGAGGAACGACTGCACTGTCCCCCGTATCCCTGCTCCAATTAGACACAGTTAAGCTTCTGTtctcctctctctctctctctgtgtcgctgtttctctctctAAGTTAGGTGTATGGAGCCTGCTACTGCCTGTTTTTAACTAGCTTccacacacacaccagtcctccccctcccctcccccaacccgcccgatcccattcctcaactcgctaccccaccaccaccaccaccccaGCTACTTTTAATGAGTTTTTCATATCACAAACTGTTCCCTGTCGTTTACAGTTTACAGTTAAGCCCGTCTACCAGCTGACACTGAGGTGGACCTTTTAATCGCTCACCCCTCTTCCTCCCAACTGCTCACCTGGGGGCCAGTccccccccccccccccccAGGTGTGGACTCAAGCCAGGGTGGCAATCACATGTCGGCCACCGGGAGAGACTTCAGGGAGACTTGACGCAGCCGCCGATATCCTGTGTGGGCTAAAAACGTCGGTTCATTTGTGACCTCTGACCTATCCACCTCTGCTCTCCAACAGGGGCGTCCGCTCCGAGAGCAACAGGAAGTAGCTGCTGCTGTTATTCAACGTTGTTACAAGAAATACAAACAGGTAGGCACCACAACCGCATCGACGTGTTCCTGACATGGTCACATATAATAAGGGCTTTTGTTTACGTGCTCCAATGTAATTACTGTGTATCATAGTTTTTGGGAGACATAAATCTCCATGAGTGAACAAACTAAATACTCTTGAATGTCTTCATTTAATTTTTTTTTTTTTtTAGTGTATAGGATAGTGTATGTTAGTCCACCATTTACAATATGTTTCCCTTTTCTGTTTGCAAGCTAACATGGATAGCCTTGAAGGTAAAGATTTTTCACTACCAGCCGCTAAATTAGTTGCCGAACTGCGTTCCCCTACCGCGGCGTGAACCCGCGGCACCATTGCAGTATTCACACGCAGCAAAGCATGACATATCGTCTCGTTTTCTCCTTTCGCAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAATTCCGGAGCTACCACGAACAGAAGAAGTTTCAGCAGAGCAGGAGGGCTGCCGTGCTCATTCAGCAATACTACCGCAGCTACAAGGAGTTTGGCAGGCTGAAGCCGCACcACCGCGGGGCTGCTGCTGCCCTGGTGCAGCACAAACTGAGGTAGACGACGCACAGCCACGTACCGCCGGCCAAATACTGCAAGATACTAATCCTGCTCAATACAGCAGGATTATGAAGTGTGTCTTTCCTCAAAATGATCTGCATGGAGTTCATGAAGGATAACTAGATTCATTCAATAAGTCATTTAGTGTCTGCACAGGCACATTTACATATTCACAGATGTGTAACTTTTGCTCTGCAAACAGTTCGACATGATTCTCTTTCTGGTGTTTCACAGAGGTAGTCTGCTCACAAAGAGGCAGGATCAAGCTGCCAGGAAGATCATGAGGTTCCTGCGCCGCTGCCGCCACAGGTAGAGCCCGACGCTGACTCACACATACACCAACATAGTCATGTATGCACACGTACACACGCAGAACTTTACATAAAACGCCCCATTCAGATTTAATGCACGGGTTGGCTTAGAAGGAGGGTTAGGGGTAAAAGCTAATCAGTAAGACtccgtagaaactacCTCTAGTTCCATAATCTTGCCCGTCTCTCAGCTCTTCTTTCTACTCGGTGTTATGTGTTTGAATTGTTTTTGTTGGACACATTGGGTGGTAACACCGAAGCTCCACCCCCCTTCCCCTCACTGTATTTGGCCCCTCCCCACCCGTCCTCGCCCCCTCCCTCACAGTGCCTACTGTGTGCTAATAGCTGTCTGGTATTGTTTTGCTGTTTATGCCAAGCCCTTTGATGGACCATAGACTGTTCAAGCGGGTGAGTGCAGCCTCAGCAACTCAGTTCGTGcctccctctccccccccccccccctctttctctttctcgctctcgctctctatctctatatctctctctctgttattctatatgcctctgtctcccccttatctccctctctgtctctcactctTCAATAATACAGTTATCTCCTCCTGAGGTCTCGGCCTTTGCATTCTcttcctccttcccctcaccttcatttttctctttttgctctttctctcccgtcccctcctcctttttccatcACTGTTGCTTGATGCCTGCTTGCATGACGGCTGCCAACTGGAGCCACAGGTGGACTGAGAAGCTCAGATTAAAAAGCAGAAaCCGATCTTGAACTAACCAAATGCTTATGAATGACAAAATCACTGCAACACTTAACAGGCACTtctctgactctctttgtctctgtctttctctcCTCGGGAAAAATGTACTTTTTGTTCACATTGTTTTTTGTTTTTATTTGACTTTCATGTGTGGTTATGCGGACGGACAGTTTGAGAGAACGGGAAGCTTTTCTTTTCTTTTTTCAATCCTGTTTTATTCTGCATGTCAAGTGGGGACACCGATGAGCCTTGCTCCTCTACTCCGAGGCATGCTGTGGGCCTGCTGCTCCTCAAGTAGTTGTGTGTCTGTCTCACCGGCTGTGTGTCCTGTTTCTAGCCACTCGACAGACTGAGAGAGGGACTCAGCCCCTCTAATCTCCGTTAACTaAAACTGTGTCAAACTGTCGAATGTACTATGCCCATAAAACAAATGCATTTAAAGAATACAGCGTGAAAAAAgACAACGCTGAAACTGGAAACGGCTCAGAACCTCATATATAGCATGTATAGAGGTTTGAGCATTTCAGTATTTTCACAAACATTTAACCTCCTTTGCTGTTGACATTCATATTTCATGTTTTTACTCCTTTACGCATCTGCAGGAAACAATCCTTAAATAGGGCGCCAGGCTTTTAGAGGGATTGTTGATGCAACCACCTCTTAAGGCAGCGATATAGGTTAGGAAGCTGTAACAGCATATAGGTCACAGAACAAAAACAATAGATTCCTCCACCCTTTGGGACTGAAACgCAGGGCCGTAATGGATTCATACCTCCAGGGAGTACTCTAGCTCGGCATGGGAGGACCCAacacacacacacacacacacTGTAACTAACCCTGTATCTACGCAGTCGTCCACTTTTCTATACCTAAATGCTGCAGTAGGTACCTTCCGCTAAGAATAAGATAATAAGGTTAAACCCATTACACGATGGTGGTCGATGTTATGGAATCAATTGTTCCATTTGAAAGCGTAGCACGCACGAGACGGGCGAGCCGCGTTCTGCTGATCCACTTGAGACGCGTGCCTCTTCTATGAACCCAGCTTCTGGTGGAATTCTTTTGTGAGCTGCCAGACAAATGCATTTATGAAGACTTGAAATATGAGTTGGTTTTTTTCCCCCCCAGAAACGGAGAAATCTTCTCTCCGACTTGACTGATGTGTTTGGAAATACTTCTTAGTTCTTTTGGGGATTTTTATACGTGGAAGGGACCTTGACCTAGTCCATAAACATTTAGTGCAGTGATTAATGCGTTTCATCATTAACCAGCTTGCTTTATAATGAAGATGGACATTTCTAAATGACATTCTCATCTTTATTTTCAATAATCACCGGAGTATGCGCCCCATGCTCTGAGGCACCgGTGTCACATTCTGCATTATGAGCAAAACGGTGTTTCAGGGTGCCGTGTGTCACTTTGAAATGAGTAGCATTAACTTAAATAATAAATGCATTTATTGTCATTATGATATCATTACCATATTGTGTTGGGACACTTCAAAAATGAAATTGCATGTCAAGATGTCTCGTATTTATTGTGCCACAAAAGTGCATTTAATCCTAACGGTGATAGATTAACACGGTAATGATTCTGTAATTGTGCTCTAATTATTCTCTGTTGTTCATTCCGTAGTGCAAGTTCAATTCAGTCTTGACCAACACTTCCTTTCATAGCCGGGAGCAGTTCCCGAGGATCCGGGCCgACGGGATGTTGTTCTGGCTGGTTCTGGCCGAACAGTGCGATACTGTTCGGCCTGTGCTGGTCCGGATGAGCGTGTTcGTAGAAACCAATGTCGTCGGTCTTATATTCATGGACGCTTGTCTCTCTCTGTGTTCCAGGGTGAAAGAATTGAAAAGGGCCAGGGAACATGAGACCCCTCAGAAGAGCCCCCTGGAGATGAACAGCCAGTCACAGTGTTTATCTGGTCAGGCCAGCAGCTCTTTTGAGAGTCGTGTCGTTGTGGTCTGTGAGAAGATGATGAGCAGAGCTTGCTGGGCCAAGTCCAAACATTTAATCCACTCCAAGACCTTCAGAGGCATGACCCTCCTTCACCTGGCTGCGGGCCAGGGCTACGCCACCCTCATCCAGACACTCATCAAGTGGCGCACCAAACACGCTGATAGTATTGATTTGGAGTTAGAGGTGGACCCTCTCAATGTAGATCACTTCTCCTGCACGCCTCTGATGTGGGCATGTGCGCTGGGTCACCTGGAGGCGGCGGTGGTCCTGTATAAATGGGACAGACGTGCACTAGCCATCCCGGATTCTCTGGGTCGCTTGCCCCTCTCGATCGCCCGATCTCGCGGCCATACCAAGTTGGCGGAGTGTCTGGAGCAGCTACAGAGGGAAGAGCAGCAGCCACCGGTCCCTCTACCGCCCGCAACTCGCATGTCTTTCTCCCCGGCCCCCGACACCCCCACCACAGACAGCTGGATGGTCAACTGGGCAAACAACAGTGGAGTCGCACCCAGTGGCAAGAAAGGGGGTCCTGCCACCACGACCACCACATCCAGCACtACAAGCCTCAACCCAGACTTGAGAAGGCCCAGGTCAGAGCCCTCCAACTACTACAGCAGCGAGGGCCAAAGAGACCTCCCACTCGCTAAAAAACATAAACCCAACCCAGAACTGTTTCAGACCCGGCCCGACAAGGCCATGTCCGTCCCTCTGAGCCTGGAGCAGCAACAGCCCCACAAGCTGTCCTCTGGTCCCAAGAGCCTGTCCTCGGAGGGCCTGAGCTCAGACAAGGGCCTGTCTACGGGAGGCAGCGCGGGGACCACCAGATGGACCTCCAGAGAGAGCTTCTCTAGCAGCGGCATGGGGAGGAAGGCGTTGGGCGTCAGTGGAAGCAGCAGCTTGGGGAAGGAGAAACTGGTGAACCGGTTGCGGCAACGGGAACAGCTGGGCATGCTGGTGATAGCTGACAGGGAAATGGCTGATGCAGAACTATTATCCTATCGGGAAGATCTGGAGAACCAGGACTGTCTCACACAGATGGATGACCTGCAGGCCAATATGATGACTCTGGCAGAGCACATCATTGAAGCAACTCCAGAGAGAATCAAAAGGGAGAACTTCACCGCAGCAGACTCCGTGCCCTTAGACACGTCGGGGGTCAGCAACACCATGAACTGGCTGGCCAACTACCTTGGAGATGTGGAACAGCTGCCGAGCATCATGCACCTACGATCTCTTTACAATGAACCCTTGAACCCAGCATCCAACCCCAGCCTCAGTCCTGGGGGGTCTCCACTGAGAGAGGGACCCCAGGAGAGGTCTGCGCTCCCGTCCCCGGCCGACTGGAGTGAGTTCATCAATGCCTCCAACAGCAAAGTGGAGCGAGACCTGGCCCAGCTGACTCTGTCAGATCCAGAGCAGAGAGAGCTGTACGAGGCCGCCCGCCTAGTCCAAACTGCCTTCCGCAAGTACAAGGGGCGTCCGCTCCGAGAGCAACAGGAAGTAGCTGCTGCTGTTATTCAACGTTGTTACAAGAAATACAAACAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAATTCCGGAGCTACCACGAACAGAAGAAGTTTCAGCAGAGCAGGAGGGCTGCCGTGCTCATTCAGCAATACTACCGCAGCTACAAGGAGTTTGGCAGGCTGAAGCCGCACcACCGCGGGGCTGCTGCTGCCCTGGTGCAGCACAAACTGAGAGGTAGTCTGCTCACAAAGAGGCAGGATCAAGCTGCCAGGAAGATCATGAGGTTCCTGCGCCGCTGCCGCCACAGGGTGAAAGAATTGAAAAGGGCCAGGGAACATGAGACCCCTCAGAAGAGCCCCCTGGAGATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000048	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23335	CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003690	Molecular Function	double-stranded DNA binding	Interproscan
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-